Wall clock time and date at job start Fri Apr 10 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38280 * 119.93479 * 2 1 4 4 C 1.38115 * 120.07212 * 179.97438 * 3 2 1 5 5 C 1.38863 * 119.92823 * 0.02562 * 4 3 2 6 6 N 1.39941 * 120.06824 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00231 * 246.18467 * 6 5 4 8 8 C 1.34777 * 119.99689 * 66.18329 * 6 5 4 9 9 O 1.21587 * 120.00203 * 5.21708 * 8 6 5 10 10 N 1.34778 * 119.99961 * 185.21129 * 8 6 5 11 11 C 1.39452 * 119.99990 * 184.49506 * 10 8 6 12 12 C 1.38643 * 119.64755 * 174.64630 * 11 10 8 13 13 C 1.40823 * 118.67293 * 180.02562 * 12 11 10 14 14 C 1.41544 * 120.99789 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00138 * 149.68523 * 14 13 12 16 16 C 1.40036 * 119.99713 * 329.67782 * 14 13 12 17 17 N 1.30740 * 119.99831 * 167.37813 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 347.38291 * 16 14 13 19 19 H 1.48498 * 109.47238 * 92.49643 * 18 16 14 20 20 H 1.48500 * 109.47197 * 212.49876 * 18 16 14 21 21 H 1.48503 * 109.47218 * 332.49708 * 18 16 14 22 22 C 1.41162 * 118.00371 * 359.97438 * 13 12 11 23 23 C 1.36584 * 119.13274 * 0.02562 * 22 13 12 24 24 N 1.32069 * 121.25799 * 359.72231 * 23 22 13 25 25 C 1.38870 * 119.86246 * 0.27024 * 5 4 3 26 26 C 1.38113 * 119.92595 * 359.45022 * 25 5 4 27 27 H 1.09011 * 109.46807 * 89.99609 * 1 2 3 28 28 H 1.08994 * 109.47227 * 209.99637 * 1 2 3 29 29 H 1.08999 * 109.47291 * 330.00382 * 1 2 3 30 30 H 1.08002 * 119.96245 * 359.95597 * 3 2 1 31 31 H 1.08000 * 120.03313 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.47293 * 270.00186 * 7 6 5 33 33 H 1.09003 * 109.47152 * 29.99993 * 7 6 5 34 34 H 1.09001 * 109.47124 * 150.00269 * 7 6 5 35 35 H 0.96993 * 119.99910 * 4.77706 * 10 8 6 36 36 H 1.08000 * 120.66403 * 0.02562 * 12 11 10 37 37 H 0.97005 * 120.00183 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.43545 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.37563 * 179.97438 * 23 22 13 40 40 H 1.08000 * 120.03263 * 179.70583 * 25 5 4 41 41 H 1.07996 * 119.96226 * 180.25504 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2016 0.0005 5 6 4.2738 -0.0002 0.0005 6 7 5.6732 -0.0002 0.0005 7 6 6.4057 -0.5125 -1.1601 8 6 6.3471 0.4711 1.0684 9 8 5.7429 0.8079 2.0683 10 7 7.6907 0.5690 1.0278 11 6 8.3954 0.9674 2.1634 12 6 9.7817 0.9587 2.1484 13 6 10.4725 1.3645 3.3065 14 6 11.8874 1.3742 3.3455 15 1 12.4056 2.0912 3.9649 16 6 12.6152 0.4539 2.5811 17 7 13.9028 0.6122 2.4189 18 14 11.7463 -0.9999 1.7930 19 1 11.3307 -0.6398 0.4136 20 1 12.6700 -2.1616 1.7443 21 1 10.5474 -1.3540 2.5946 22 6 9.7116 1.7612 4.4273 23 6 8.3483 1.7366 4.3479 24 7 7.7329 1.3548 3.2435 25 6 3.5780 -1.2019 -0.0057 26 6 2.1969 -1.1984 -0.0004 27 1 -0.3633 0.0001 -1.0278 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6553 2.1327 -0.0007 31 1 4.1164 2.1379 0.0001 32 1 6.5874 -1.5798 -1.0330 33 1 5.8167 -0.3492 -2.0626 34 1 7.3582 0.0101 -1.2483 35 1 8.1672 0.3664 0.2077 36 1 10.3210 0.6470 1.2661 37 1 14.4069 -0.0251 1.8891 38 1 10.2010 2.0793 5.3360 39 1 7.7622 2.0389 5.2032 40 1 4.1163 -2.1382 -0.0105 41 1 1.6552 -2.1327 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208111151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:11 Heat of formation + Delta-G solvation = 33.409728 kcal Electronic energy + Delta-G solvation = -24692.172567 eV Core-core repulsion = 21150.928788 eV Total energy + Delta-G solvation = -3541.243779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01957 -40.64286 -39.59259 -36.77605 -36.20563 -35.63979 -33.24054 -32.85407 -31.93134 -30.62261 -28.32572 -27.96790 -26.90469 -24.24687 -23.92666 -23.66039 -22.25545 -21.12553 -19.74763 -19.51915 -18.14880 -17.75929 -17.25508 -17.04769 -16.50274 -16.26888 -15.99341 -15.93497 -15.33433 -14.93863 -14.78407 -14.70424 -14.67111 -14.50102 -14.39078 -14.05180 -13.48606 -13.47951 -13.04465 -12.81938 -12.77501 -12.65359 -12.62980 -12.40961 -12.03627 -11.86198 -11.63719 -11.42265 -11.17886 -10.27416 -10.15324 -9.90743 -9.72594 -9.29492 -9.00399 -8.96374 -6.74685 0.24166 0.43857 0.57384 0.74244 1.21570 1.36400 1.38231 1.46999 2.05580 2.08723 2.66028 2.67588 2.79132 3.50955 3.89565 3.93512 4.02013 4.05331 4.07873 4.35301 4.41528 4.47303 4.51470 4.56865 4.59983 4.63233 4.70875 4.75572 4.82434 4.89751 5.08706 5.10727 5.13891 5.22799 5.36276 5.39310 5.47498 5.59192 5.66018 5.70018 5.73335 6.05880 6.12491 6.23563 6.49353 6.64385 6.67213 7.39174 7.69129 8.09596 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.003256 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.768593 B = 8597.439173 C = 9316.101980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.123 4.123 5 C 0.134 3.866 6 N -0.588 5.588 7 C 0.070 3.930 8 C 0.693 3.307 9 O -0.560 6.560 10 N -0.661 5.661 11 C 0.382 3.618 12 C -0.326 4.326 13 C 0.115 3.885 14 C -0.466 4.466 15 H 0.068 0.932 16 C 0.052 3.948 17 N -0.834 5.834 18 Si 0.967 3.033 19 H -0.242 1.242 20 H -0.276 1.276 21 H -0.265 1.265 22 C -0.279 4.279 23 C 0.129 3.871 24 N -0.574 5.574 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.420 0.580 36 H 0.119 0.881 37 H 0.299 0.701 38 H 0.123 0.877 39 H 0.158 0.842 40 H 0.133 0.867 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.016 -6.043 -12.238 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.143 4.143 5 C 0.043 3.957 6 N -0.322 5.322 7 C -0.071 4.071 8 C 0.394 3.606 9 O -0.432 6.432 10 N -0.312 5.312 11 C 0.153 3.847 12 C -0.352 4.352 13 C 0.106 3.894 14 C -0.496 4.496 15 H 0.086 0.914 16 C -0.166 4.166 17 N -0.460 5.460 18 Si 0.791 3.209 19 H -0.167 1.167 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.303 4.303 23 C -0.022 4.022 24 N -0.294 5.294 25 C -0.143 4.143 26 C -0.130 4.130 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.261 0.739 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.104 -5.857 -11.646 24.806 hybrid contribution 1.883 -0.197 -0.337 1.923 sum -19.221 -6.054 -11.983 23.446 Atomic orbital electron populations 1.20836 0.88728 1.03721 1.03426 1.20337 0.97892 0.92568 0.98455 1.21145 0.92676 0.99189 1.00425 1.21288 0.95409 0.96965 1.00638 1.17545 0.81121 0.94077 1.02952 1.44607 1.04322 1.66042 1.17264 1.22142 0.97193 1.00376 0.87344 1.16148 0.81619 0.79206 0.83611 1.91009 1.67253 1.53105 1.31860 1.42665 1.05544 1.69641 1.13399 1.17951 0.87237 0.92739 0.86807 1.21263 0.91833 1.21467 1.00640 1.17889 0.93506 0.87551 0.90423 1.19485 0.89960 1.16405 1.23766 0.91370 1.26838 0.95339 1.01063 0.93330 1.69625 1.09226 1.35679 1.31453 0.85480 0.78429 0.76851 0.80170 1.16683 1.20300 1.18951 1.21886 0.94845 1.14045 0.99497 1.22084 0.91965 0.93644 0.94533 1.67447 1.39880 1.21585 1.00494 1.21368 0.95200 0.96843 1.00899 1.21223 0.92872 0.98968 0.99905 0.89666 0.90383 0.90991 0.84124 0.87666 0.90553 0.88209 0.90216 0.73942 0.86312 0.89042 0.85912 0.82487 0.84863 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.23 0.71 -0.54 16 2 C -0.09 -1.69 5.88 -19.84 -0.12 -1.81 16 3 C -0.12 -2.52 9.69 22.25 0.22 -2.30 16 4 C -0.12 -3.38 9.47 22.39 0.21 -3.17 16 5 C 0.13 3.70 4.78 38.15 0.18 3.88 16 6 N -0.59 -16.76 2.93 -671.55 -1.97 -18.73 16 7 C 0.07 1.27 10.24 127.77 1.31 2.57 16 8 C 0.69 26.61 8.08 179.05 1.45 28.05 16 9 O -0.56 -26.69 14.31 -3.99 -0.06 -26.75 16 10 N -0.66 -24.94 5.27 -322.36 -1.70 -26.64 16 11 C 0.38 17.71 7.42 132.76 0.98 18.69 16 12 C -0.33 -15.44 6.96 23.00 0.16 -15.28 16 13 C 0.11 5.85 5.17 -21.11 -0.11 5.74 16 14 C -0.47 -25.17 9.67 23.52 0.23 -24.94 16 15 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 16 C 0.05 2.63 5.48 85.29 0.47 3.09 16 17 N -0.83 -43.20 13.92 21.84 0.30 -42.89 16 18 Si 0.97 40.41 24.43 68.60 1.68 42.08 16 19 H -0.24 -8.91 6.66 99.48 0.66 -8.25 16 20 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.26 -11.94 6.67 99.48 0.66 -11.27 16 22 C -0.28 -13.21 9.85 22.60 0.22 -12.99 16 23 C 0.13 5.90 11.10 84.27 0.94 6.84 16 24 N -0.57 -28.40 7.86 -194.28 -1.53 -29.93 16 25 C -0.12 -2.80 9.83 22.39 0.22 -2.58 16 26 C -0.11 -2.05 9.69 22.25 0.22 -1.84 16 27 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.08 1.28 6.12 -2.39 -0.01 1.26 16 35 H 0.42 12.40 6.34 -92.71 -0.59 11.81 16 36 H 0.12 5.23 4.43 -2.91 -0.01 5.21 16 37 H 0.30 13.75 8.29 -92.70 -0.77 12.98 16 38 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 39 H 0.16 6.09 8.06 -2.91 -0.02 6.07 16 40 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -72.28 344.56 4.40 -67.88 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.39 Total: 31.54 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 7.29 Total: 3.44 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.89 Total: -118.19 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.75 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.68 Total: 42.08 kcal Total: -72.28 4.40 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208111151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.286 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds