Wall clock time and date at job start Fri Apr 10 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47089 * 239.99891 * 3 2 1 5 5 H 1.48500 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47386 * 120.00126 * 3 2 1 7 7 C 1.38625 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00217 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99554 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99914 * 174.92557 * 9 7 2 11 11 C 1.38729 * 120.10333 * 5.68431 * 10 9 7 12 12 C 1.38173 * 120.00342 * 180.02562 * 11 10 9 13 13 C 1.38351 * 120.21705 * 359.97438 * 12 11 10 14 14 C 1.38187 * 120.20508 * 0.02562 * 13 12 11 15 15 C 1.38770 * 119.98816 * 359.97438 * 14 13 12 16 16 N 1.39821 * 120.10120 * 180.02562 * 15 14 13 17 17 C 1.39332 * 119.99642 * 269.99905 * 16 15 14 18 18 C 1.39105 * 119.63155 * 9.28408 * 17 16 15 19 19 C 1.38271 * 119.17880 * 179.73518 * 18 17 16 20 20 C 1.39435 * 118.43903 * 0.52894 * 19 18 17 21 21 N 1.40012 * 120.40499 * 179.75381 * 20 19 18 22 22 C 1.38656 * 119.18278 * 359.73419 * 20 19 18 23 23 N 1.31971 * 120.75887 * 0.02562 * 22 20 19 24 24 C 1.46495 * 120.00165 * 90.00000 * 16 15 14 25 25 C 1.52995 * 117.49965 * 3.41707 * 24 16 15 26 26 C 1.52991 * 60.00254 * 252.51530 * 25 24 16 27 27 H 0.97004 * 119.99870 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99496 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.88601 * 180.27730 * 12 11 10 30 30 H 1.07999 * 119.89578 * 179.97438 * 13 12 11 31 31 H 1.07993 * 120.00491 * 179.97438 * 14 13 12 32 32 H 1.08003 * 120.41076 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.78350 * 180.23979 * 19 18 17 34 34 H 0.97000 * 119.99978 * 179.97438 * 21 20 19 35 35 H 0.97006 * 119.99969 * 359.97438 * 21 20 19 36 36 H 1.08002 * 119.61961 * 179.97438 * 22 20 19 37 37 H 1.09002 * 115.55445 * 149.13496 * 24 16 15 38 38 H 1.09004 * 117.50167 * 0.02562 * 25 24 16 39 39 H 1.09001 * 117.49834 * 145.02373 * 25 24 16 40 40 H 1.09002 * 117.49721 * 252.51126 * 26 25 24 41 41 H 1.09000 * 117.50207 * 107.49498 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6965 1.2124 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3350 -2.3679 0.0005 10 6 2.0704 -3.5043 -0.1059 11 6 3.4561 -3.4404 -0.0898 12 6 4.2025 -4.5981 -0.1988 13 6 3.5726 -5.8235 -0.3237 14 6 2.1928 -5.8974 -0.3408 15 6 1.4348 -4.7401 -0.2319 16 7 0.0386 -4.8121 -0.2484 17 6 -0.6490 -4.7297 -1.4575 18 6 0.0579 -4.7712 -2.6548 19 6 -0.6344 -4.6942 -3.8493 20 6 -2.0221 -4.5660 -3.8055 21 7 -2.7635 -4.4794 -4.9900 22 6 -2.6588 -4.5258 -2.5744 23 7 -1.9667 -4.6068 -1.4536 24 6 -0.7014 -4.9742 1.0055 25 6 0.1045 -4.9780 2.3060 26 6 -0.5032 -6.2794 1.7790 27 1 -0.4850 0.8401 0.0004 28 1 3.9515 -2.4858 0.0080 29 1 5.2812 -4.5466 -0.1815 30 1 4.1611 -6.7251 -0.4090 31 1 1.7044 -6.8556 -0.4389 32 1 1.1337 -4.8662 -2.6516 33 1 -0.1120 -4.7278 -4.7940 34 1 -3.7287 -4.3907 -4.9527 35 1 -2.3119 -4.5081 -5.8481 36 1 -3.7334 -4.4263 -2.5322 37 1 -1.6925 -4.5212 1.0285 38 1 1.1854 -4.8594 2.2287 39 1 -0.3562 -4.5270 3.1849 40 1 -1.3638 -6.6846 2.3112 41 1 0.1777 -7.0174 1.3550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212599125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:15 Heat of formation + Delta-G solvation = 89.058733 kcal Electronic energy + Delta-G solvation = -25879.998074 eV Core-core repulsion = 22341.167417 eV Total energy + Delta-G solvation = -3538.830657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.08369 -39.02456 -37.34566 -36.15598 -34.78633 -33.03512 -32.27539 -31.24173 -29.52629 -28.74019 -26.81662 -25.37179 -23.53631 -22.46220 -21.87089 -21.66434 -21.40035 -19.76809 -17.98296 -17.62894 -17.05796 -16.59782 -16.26004 -15.62221 -14.88286 -14.68973 -14.40994 -14.31756 -13.89596 -13.79296 -13.64940 -13.28490 -13.22183 -12.69836 -12.66790 -12.27419 -11.83596 -11.73751 -11.44922 -11.34392 -11.04797 -10.93541 -10.86996 -10.78041 -10.50682 -10.25797 -9.85441 -9.46765 -9.12789 -8.92200 -8.85718 -8.27541 -8.14712 -7.26558 -6.45589 -6.36806 -4.04181 1.83088 1.99577 2.14813 2.31118 3.11362 3.12645 3.15320 3.54050 3.94328 4.18672 4.36129 4.45489 4.61537 5.05107 5.10484 5.20131 5.29171 5.40356 5.48626 5.55176 5.61077 5.64230 5.67526 5.76401 6.00941 6.06326 6.22640 6.26798 6.29564 6.40475 6.43815 6.55689 6.59114 6.63990 6.66328 6.96744 7.03581 7.08484 7.30045 7.31039 7.59209 7.68124 7.93785 7.98275 8.04153 8.18112 8.88126 8.99001 9.68585 10.70897 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.006245 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.946934 B = 4482.559932 C = 5714.317526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.396 4.396 8 H 0.091 0.909 9 O -0.153 6.153 10 C 0.155 3.845 11 C -0.234 4.234 12 C -0.067 4.067 13 C -0.214 4.214 14 C -0.069 4.069 15 C 0.064 3.936 16 N -0.519 5.519 17 C 0.381 3.619 18 C -0.172 4.172 19 C -0.112 4.112 20 C 0.097 3.903 21 N -0.884 5.884 22 C 0.073 3.927 23 N -0.499 5.499 24 C 0.120 3.880 25 C -0.180 4.180 26 C -0.205 4.205 27 H 0.270 0.730 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.393 0.607 35 H 0.392 0.608 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -9.617 -4.518 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.473 4.473 8 H 0.108 0.892 9 O -0.054 6.054 10 C 0.097 3.903 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.234 4.234 14 C -0.089 4.089 15 C -0.028 4.028 16 N -0.227 5.227 17 C 0.147 3.853 18 C -0.197 4.197 19 C -0.143 4.143 20 C -0.008 4.008 21 N -0.427 5.427 22 C -0.089 4.089 23 N -0.214 5.214 24 C 0.016 3.984 25 C -0.218 4.218 26 C -0.244 4.244 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.221 0.779 35 H 0.219 0.781 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.559 -9.338 -3.500 10.094 hybrid contribution 0.906 1.004 -1.091 1.737 sum -0.654 -8.334 -4.591 9.537 Atomic orbital electron populations 1.70074 1.05857 1.27704 1.44655 1.25274 0.95785 0.98739 0.96437 0.85835 0.78775 0.79970 0.79180 1.19516 1.20273 1.19467 1.21286 0.91728 0.80977 1.53262 0.89208 1.84062 1.33729 1.11007 1.76610 1.19757 0.90202 0.87952 0.92354 1.21111 0.93274 0.99222 1.11819 1.20813 0.98590 0.92281 0.96839 1.20464 0.93662 0.97108 1.12121 1.20947 0.93618 0.96273 0.98055 1.16353 0.81366 0.90486 1.14617 1.42420 1.01470 1.76921 1.01850 1.17996 0.87721 0.94144 0.85397 1.21225 1.00865 1.06537 0.91068 1.20703 0.91923 1.03572 0.98052 1.18505 0.91688 1.02460 0.88152 1.42087 1.08578 1.87379 1.04676 1.21736 0.98910 1.02636 0.85662 1.66928 1.07039 1.17106 1.30333 1.21338 0.96732 0.98644 0.81734 1.23160 1.00714 1.00452 0.97472 1.23420 1.03257 0.92295 1.05453 0.91992 0.85325 0.87329 0.87338 0.86958 0.85261 0.85799 0.77947 0.78086 0.83856 0.85520 0.88434 0.88697 0.89066 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.03 13.67 55.48 0.76 -24.27 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.40 -10.94 9.49 30.88 0.29 -10.65 16 8 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 9 O -0.15 -4.29 9.50 0.02 0.00 -4.29 16 10 C 0.15 3.65 6.62 -38.92 -0.26 3.39 16 11 C -0.23 -4.92 9.16 -39.42 -0.36 -5.28 16 12 C -0.07 -1.17 10.04 -39.56 -0.40 -1.57 16 13 C -0.21 -3.54 10.04 -39.56 -0.40 -3.94 16 14 C -0.07 -1.23 9.53 -39.40 -0.38 -1.61 16 15 C 0.06 1.33 2.02 -83.53 -0.17 1.17 16 16 N -0.52 -10.88 2.71 -106.32 -0.29 -11.17 16 17 C 0.38 8.03 7.33 -154.75 -1.13 6.90 16 18 C -0.17 -3.34 9.34 -39.25 -0.37 -3.70 16 19 C -0.11 -1.86 10.04 -39.12 -0.39 -2.25 16 20 C 0.10 1.51 6.79 -83.52 -0.57 0.94 16 21 N -0.88 -9.85 9.11 32.53 0.30 -9.56 16 22 C 0.07 1.25 11.05 -17.34 -0.19 1.05 16 23 N -0.50 -10.16 9.28 -12.22 -0.11 -10.28 16 24 C 0.12 2.35 6.21 -67.94 -0.42 1.92 16 25 C -0.18 -3.23 9.84 -26.74 -0.26 -3.49 16 26 C -0.20 -3.26 10.37 -26.74 -0.28 -3.53 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.82 7.91 -52.49 -0.42 1.41 16 32 H 0.13 2.52 6.81 -52.48 -0.36 2.16 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.39 3.56 8.86 -40.82 -0.36 3.19 16 35 H 0.39 3.62 8.86 -40.82 -0.36 3.25 16 36 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 37 H 0.13 2.59 7.66 -51.93 -0.40 2.19 16 38 H 0.10 1.90 7.02 -51.93 -0.36 1.54 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.39 7.83 -51.93 -0.41 0.99 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -31.89 351.10 -9.36 -41.25 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -4.91 Total: 17.07 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -5.37 Total: -19.56 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.65 Total: -55.27 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: 0.00 Total: -4.29 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.89 -9.36 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.308 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds