Wall clock time and date at job start Fri Apr 10 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47089 * 239.99891 * 3 2 1 5 5 H 1.48500 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47386 * 120.00126 * 3 2 1 7 7 C 1.38625 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00217 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99554 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99914 * 174.92557 * 9 7 2 11 11 C 1.38729 * 120.10333 * 5.68431 * 10 9 7 12 12 C 1.38173 * 120.00342 * 180.02562 * 11 10 9 13 13 C 1.38351 * 120.21705 * 359.97438 * 12 11 10 14 14 C 1.38187 * 120.20508 * 0.02562 * 13 12 11 15 15 C 1.38770 * 119.98816 * 359.97438 * 14 13 12 16 16 N 1.39821 * 120.10120 * 180.02562 * 15 14 13 17 17 C 1.39332 * 119.99642 * 269.99905 * 16 15 14 18 18 C 1.39105 * 119.63155 * 9.28408 * 17 16 15 19 19 C 1.38271 * 119.17880 * 179.73518 * 18 17 16 20 20 C 1.39435 * 118.43903 * 0.52894 * 19 18 17 21 21 N 1.40012 * 120.40499 * 179.75381 * 20 19 18 22 22 C 1.38656 * 119.18278 * 359.73419 * 20 19 18 23 23 N 1.31971 * 120.75887 * 0.02562 * 22 20 19 24 24 C 1.46495 * 120.00165 * 90.00000 * 16 15 14 25 25 C 1.52995 * 117.49965 * 3.41707 * 24 16 15 26 26 C 1.52991 * 60.00254 * 252.51530 * 25 24 16 27 27 H 0.97004 * 119.99870 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99496 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.88601 * 180.27730 * 12 11 10 30 30 H 1.07999 * 119.89578 * 179.97438 * 13 12 11 31 31 H 1.07993 * 120.00491 * 179.97438 * 14 13 12 32 32 H 1.08003 * 120.41076 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.78350 * 180.23979 * 19 18 17 34 34 H 0.97000 * 119.99978 * 179.97438 * 21 20 19 35 35 H 0.97006 * 119.99969 * 359.97438 * 21 20 19 36 36 H 1.08002 * 119.61961 * 179.97438 * 22 20 19 37 37 H 1.09002 * 115.55445 * 149.13496 * 24 16 15 38 38 H 1.09004 * 117.50167 * 0.02562 * 25 24 16 39 39 H 1.09001 * 117.49834 * 145.02373 * 25 24 16 40 40 H 1.09002 * 117.49721 * 252.51126 * 26 25 24 41 41 H 1.09000 * 117.50207 * 107.49498 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6965 1.2124 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3350 -2.3679 0.0005 10 6 2.0704 -3.5043 -0.1059 11 6 3.4561 -3.4404 -0.0898 12 6 4.2025 -4.5981 -0.1988 13 6 3.5726 -5.8235 -0.3237 14 6 2.1928 -5.8974 -0.3408 15 6 1.4348 -4.7401 -0.2319 16 7 0.0386 -4.8121 -0.2484 17 6 -0.6490 -4.7297 -1.4575 18 6 0.0579 -4.7712 -2.6548 19 6 -0.6344 -4.6942 -3.8493 20 6 -2.0221 -4.5660 -3.8055 21 7 -2.7635 -4.4794 -4.9900 22 6 -2.6588 -4.5258 -2.5744 23 7 -1.9667 -4.6068 -1.4536 24 6 -0.7014 -4.9742 1.0055 25 6 0.1045 -4.9780 2.3060 26 6 -0.5032 -6.2794 1.7790 27 1 -0.4850 0.8401 0.0004 28 1 3.9515 -2.4858 0.0080 29 1 5.2812 -4.5466 -0.1815 30 1 4.1611 -6.7251 -0.4090 31 1 1.7044 -6.8556 -0.4389 32 1 1.1337 -4.8662 -2.6516 33 1 -0.1120 -4.7278 -4.7940 34 1 -3.7287 -4.3907 -4.9527 35 1 -2.3119 -4.5081 -5.8481 36 1 -3.7334 -4.4263 -2.5322 37 1 -1.6925 -4.5212 1.0285 38 1 1.1854 -4.8594 2.2287 39 1 -0.3562 -4.5270 3.1849 40 1 -1.3638 -6.6846 2.3112 41 1 0.1777 -7.0174 1.3550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212599125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:14 Heat of formation + Delta-G solvation = 69.542534 kcal Electronic energy + Delta-G solvation = -25880.844360 eV Core-core repulsion = 22341.167417 eV Total energy + Delta-G solvation = -3539.676943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56467 -40.54633 -38.91586 -37.74490 -36.05274 -34.47417 -34.20191 -32.58916 -31.02909 -30.29381 -28.19839 -27.30812 -24.93351 -23.90597 -23.33164 -23.07416 -22.96534 -21.26321 -19.79966 -19.16684 -18.44461 -18.06251 -17.55402 -17.06049 -16.48545 -16.35209 -15.79631 -15.73964 -15.45200 -15.36821 -15.10429 -14.82837 -14.77809 -14.39977 -14.00827 -13.67565 -13.57036 -13.18508 -12.98295 -12.86416 -12.56024 -12.48797 -12.34602 -12.26957 -12.13040 -11.64604 -11.29998 -11.25938 -10.79473 -10.55135 -10.34241 -9.65670 -9.56928 -8.94669 -8.43838 -7.69856 -6.11312 0.43738 0.47810 0.74552 0.77402 1.31704 1.42590 1.47395 2.10257 2.17308 2.81938 2.96164 3.12067 3.16119 3.20224 3.51362 3.74004 3.94030 4.02913 4.09546 4.16888 4.21927 4.28314 4.29210 4.32355 4.55487 4.69760 4.74929 4.87468 4.88046 4.96047 5.05033 5.09060 5.14124 5.15195 5.23095 5.24888 5.58931 5.64801 5.68110 5.75992 5.99351 6.10564 6.46370 6.63478 6.71320 6.99629 7.14397 7.45856 7.84558 8.77375 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.006245 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.946934 B = 4482.559932 C = 5714.317526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.020 4.020 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.208 6.208 10 C 0.116 3.884 11 C -0.246 4.246 12 C -0.064 4.064 13 C -0.182 4.182 14 C -0.071 4.071 15 C 0.069 3.931 16 N -0.529 5.529 17 C 0.346 3.654 18 C -0.189 4.189 19 C -0.117 4.117 20 C 0.112 3.888 21 N -0.864 5.864 22 C 0.054 3.946 23 N -0.524 5.524 24 C 0.088 3.912 25 C -0.186 4.186 26 C -0.163 4.163 27 H 0.268 0.732 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.407 0.593 35 H 0.406 0.594 36 H 0.170 0.830 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -11.884 -5.796 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.218 4.218 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.113 6.113 10 C 0.063 3.937 11 C -0.266 4.266 12 C -0.082 4.082 13 C -0.201 4.201 14 C -0.091 4.091 15 C -0.023 4.023 16 N -0.239 5.239 17 C 0.113 3.887 18 C -0.214 4.214 19 C -0.148 4.148 20 C 0.005 3.995 21 N -0.408 5.408 22 C -0.108 4.108 23 N -0.240 5.240 24 C -0.016 4.016 25 C -0.224 4.224 26 C -0.202 4.202 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.236 0.764 35 H 0.235 0.765 36 H 0.187 0.813 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.002 -11.667 -4.817 12.622 hybrid contribution 0.459 1.373 -0.811 1.659 sum 0.457 -10.294 -5.629 11.741 Atomic orbital electron populations 1.70249 1.07942 1.28343 1.48468 1.26490 0.96680 1.02533 0.96061 0.84743 0.77439 0.74748 0.79899 1.18260 1.19988 1.18088 1.21747 0.92351 0.81759 1.53041 0.88323 1.84043 1.35107 1.11970 1.80186 1.20396 0.91529 0.87953 0.93856 1.21271 0.92630 1.00482 1.12179 1.21220 1.00423 0.91182 0.95333 1.21037 0.93271 0.98364 1.07466 1.21264 0.94347 0.96063 0.97384 1.16682 0.81874 0.90462 1.13278 1.42510 1.01546 1.77609 1.02185 1.18286 0.88310 0.96113 0.85980 1.21271 1.00546 1.07847 0.91783 1.21025 0.92545 1.02915 0.98303 1.18536 0.91665 1.00268 0.89076 1.42029 1.09242 1.85698 1.03827 1.22266 1.00145 1.02634 0.85745 1.66903 1.07221 1.17753 1.32112 1.21357 0.96176 1.01900 0.82205 1.23120 0.99472 1.02625 0.97167 1.23430 1.03394 0.90734 1.02616 0.92298 0.86312 0.83408 0.82772 0.84760 0.86146 0.82830 0.76353 0.76476 0.81321 0.87757 0.90295 0.87984 0.86411 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.53 13.67 21.61 0.30 -57.23 16 2 C -0.02 -1.13 5.49 84.82 0.47 -0.66 16 3 Si 1.01 43.81 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.41 -24.17 9.49 67.91 0.64 -23.53 16 8 H 0.10 5.29 5.21 -2.92 -0.02 5.27 16 9 O -0.21 -12.51 9.50 -22.84 -0.22 -12.73 16 10 C 0.12 5.70 6.62 22.70 0.15 5.85 16 11 C -0.25 -10.40 9.16 22.37 0.21 -10.20 16 12 C -0.06 -2.04 10.04 22.28 0.22 -1.82 16 13 C -0.18 -5.30 10.04 22.28 0.22 -5.08 16 14 C -0.07 -2.39 9.53 22.38 0.21 -2.18 16 15 C 0.07 2.94 2.02 38.31 0.08 3.02 16 16 N -0.53 -23.10 2.71 -490.29 -1.33 -24.43 16 17 C 0.35 15.17 7.33 132.96 0.97 16.14 16 18 C -0.19 -7.51 9.34 22.49 0.21 -7.30 16 19 C -0.12 -3.80 10.04 22.57 0.23 -3.57 16 20 C 0.11 3.34 6.79 38.22 0.26 3.60 16 21 N -0.86 -16.99 9.11 -50.99 -0.46 -17.46 16 22 C 0.05 1.86 11.05 84.77 0.94 2.80 16 23 N -0.52 -22.19 9.28 -192.56 -1.79 -23.98 16 24 C 0.09 3.60 6.21 44.99 0.28 3.88 16 25 C -0.19 -6.86 9.84 30.59 0.30 -6.56 16 26 C -0.16 -5.02 10.37 30.59 0.32 -4.70 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 29 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.13 3.95 7.91 -2.91 -0.02 3.93 16 32 H 0.12 4.81 6.81 -2.91 -0.02 4.79 16 33 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 34 H 0.41 6.21 8.86 -92.71 -0.82 5.39 16 35 H 0.41 6.20 8.86 -92.70 -0.82 5.38 16 36 H 0.17 4.65 8.06 -2.91 -0.02 4.62 16 37 H 0.10 4.61 7.66 -2.39 -0.02 4.59 16 38 H 0.08 3.19 7.02 -2.38 -0.02 3.17 16 39 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.10 2.85 7.83 -2.39 -0.02 2.83 16 Total: -1.00 -77.17 351.10 3.68 -73.49 By element: Atomic # 1 Polarization: 47.36 SS G_CDS: -0.55 Total: 46.81 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 5.71 Total: -30.31 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -3.28 Total: -123.10 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.22 Total: -12.73 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -77.17 3.68 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.035 kcal (2) G-P(sol) polarization free energy of solvation -77.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds