Wall clock time and date at job start Fri Apr 10 2020 22:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86796 * 119.99662 * 2 1 4 4 H 1.48506 * 109.46997 * 240.00058 * 3 2 1 5 5 H 1.48503 * 109.47536 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47480 * 120.00042 * 3 2 1 7 7 C 1.38612 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99725 * 179.97438 * 7 2 1 9 9 O 1.34810 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.35786 * 116.99873 * 185.06296 * 9 7 2 11 11 C 1.38917 * 119.99425 * 354.34233 * 10 9 7 12 12 C 1.37986 * 120.00704 * 179.97438 * 11 10 9 13 13 C 1.38973 * 119.99532 * 359.97438 * 12 11 10 14 14 N 1.39811 * 120.00507 * 180.02562 * 13 12 11 15 15 C 1.39340 * 120.00185 * 5.01640 * 14 13 12 16 16 C 1.39108 * 119.62622 * 85.11664 * 15 14 13 17 17 C 1.38269 * 119.17822 * 180.25213 * 16 15 14 18 18 C 1.39420 * 118.44020 * 359.49948 * 17 16 15 19 19 N 1.40015 * 120.40848 * 180.23165 * 18 17 16 20 20 C 1.38662 * 119.18820 * 0.25683 * 18 17 16 21 21 N 1.31968 * 120.74981 * 359.97438 * 20 18 17 22 22 C 1.46502 * 119.99719 * 185.02249 * 14 13 12 23 23 C 1.53005 * 117.49807 * 193.28969 * 22 14 13 24 24 C 1.53001 * 117.49759 * 124.63139 * 22 14 13 25 25 C 1.38965 * 119.98316 * 0.27821 * 13 12 11 26 26 C 1.37989 * 119.99747 * 359.42481 * 25 13 12 27 27 H 0.96996 * 119.99977 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99231 * 359.97205 * 11 10 9 29 29 H 1.08000 * 120.00114 * 180.02562 * 12 11 10 30 30 H 1.08005 * 120.40769 * 0.02981 * 16 15 14 31 31 H 1.07992 * 120.78029 * 179.77834 * 17 16 15 32 32 H 0.96998 * 119.99823 * 0.02562 * 19 18 17 33 33 H 0.96992 * 120.00205 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.62488 * 180.02562 * 20 18 17 35 35 H 1.08998 * 115.54830 * 338.96166 * 22 14 13 36 36 H 1.09001 * 117.49703 * 359.97438 * 23 22 14 37 37 H 1.08996 * 117.49662 * 145.01957 * 23 22 14 38 38 H 1.09004 * 117.49960 * 214.97922 * 24 22 14 39 39 H 1.09005 * 117.50211 * 359.97438 * 24 22 14 40 40 H 1.08007 * 120.00201 * 179.72466 * 25 13 12 41 41 H 1.07996 * 120.00019 * 180.27666 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2126 5 1 1.2848 2.7465 -0.0006 6 1 3.1036 1.6966 1.2125 7 6 2.0090 -1.2004 0.0005 8 1 3.0890 -1.2003 0.0001 9 8 1.3350 -2.3679 0.0005 10 6 2.0704 -3.5043 0.1078 11 6 3.4579 -3.4376 0.0928 12 6 4.2055 -4.5922 0.2024 13 6 3.5703 -5.8218 0.3283 14 7 4.3276 -6.9918 0.4399 15 6 5.7160 -6.9171 0.5301 16 6 6.3148 -6.7157 1.7694 17 6 7.6931 -6.6378 1.8475 18 6 8.4334 -6.7756 0.6742 19 7 9.8316 -6.7085 0.7064 20 6 7.7681 -6.9795 -0.5252 21 7 6.4506 -7.0440 -0.5635 22 6 3.6612 -8.2963 0.4618 23 6 4.4917 -9.5066 0.8936 24 6 4.1002 -9.3314 -0.5759 25 6 2.1823 -5.8887 0.3381 26 6 1.4351 -4.7332 0.2346 27 1 -0.4850 0.8400 0.0004 28 1 3.9514 -2.4819 -0.0047 29 1 5.2841 -4.5402 0.1911 30 1 5.7104 -6.6178 2.6591 31 1 8.1848 -6.4784 2.7957 32 1 10.2910 -6.5656 1.5487 33 1 10.3408 -6.8048 -0.1135 34 1 8.3347 -7.0877 -1.4383 35 1 2.6085 -8.2817 0.7440 36 1 5.5340 -9.3323 1.1608 37 1 3.9852 -10.2885 1.4594 38 1 3.3364 -9.9981 -0.9761 39 1 4.8846 -9.0416 -1.2752 40 1 1.6883 -6.8447 0.4315 41 1 0.3565 -4.7847 0.2467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212607234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:19 Heat of formation + Delta-G solvation = 91.742453 kcal Electronic energy + Delta-G solvation = -24711.265023 eV Core-core repulsion = 21172.550741 eV Total energy + Delta-G solvation = -3538.714282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61673 -38.99642 -37.93102 -36.12691 -35.18954 -33.13105 -32.09666 -31.85459 -30.19003 -28.81567 -26.83458 -25.14730 -23.88550 -23.39623 -22.28784 -21.95582 -21.25601 -20.09460 -17.76569 -17.66690 -17.59038 -17.21003 -16.77056 -16.23359 -15.29187 -14.72628 -14.46117 -14.39406 -14.11141 -13.97202 -13.57738 -13.41524 -13.32520 -12.99138 -12.75272 -12.40717 -12.33855 -12.12249 -11.53212 -11.51345 -11.34930 -11.19282 -11.06741 -10.64476 -10.58971 -10.40511 -10.27035 -9.68385 -9.62859 -9.20624 -8.94807 -8.32773 -8.14017 -7.80818 -6.39631 -6.31012 -3.88261 1.15540 1.29912 2.24354 2.53443 3.13503 3.20218 3.21094 3.23680 3.54119 3.76930 3.93685 4.07406 4.56937 4.67826 4.73397 4.78866 4.90401 4.98403 5.13803 5.15572 5.23101 5.42834 5.61946 5.63726 5.68165 5.72564 5.80431 5.84863 5.94956 5.99965 6.19904 6.21857 6.27924 6.33588 6.57049 6.87787 6.94724 7.04783 7.15269 7.34214 7.37460 7.48249 7.65650 7.85894 8.04720 8.13496 8.22723 9.14788 9.88586 10.87506 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003548 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.784839 B = 7889.186505 C = 9356.480311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.037 3.963 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.387 4.387 8 H 0.088 0.912 9 O -0.186 6.186 10 C 0.121 3.879 11 C -0.194 4.194 12 C -0.123 4.123 13 C 0.124 3.876 14 N -0.551 5.551 15 C 0.318 3.682 16 C -0.109 4.109 17 C -0.151 4.151 18 C 0.159 3.841 19 N -0.873 5.873 20 C 0.037 3.963 21 N -0.447 5.447 22 C 0.109 3.891 23 C -0.194 4.194 24 C -0.200 4.200 25 C -0.131 4.131 26 C -0.153 4.153 27 H 0.268 0.732 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.399 0.601 33 H 0.400 0.600 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.494 -16.616 3.380 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.166 4.166 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 O -0.090 6.090 10 C 0.068 3.932 11 C -0.213 4.213 12 C -0.145 4.145 13 C 0.030 3.970 14 N -0.263 5.263 15 C 0.090 3.910 16 C -0.132 4.132 17 C -0.182 4.182 18 C 0.053 3.947 19 N -0.413 5.413 20 C -0.127 4.127 21 N -0.157 5.157 22 C 0.004 3.996 23 C -0.232 4.232 24 C -0.240 4.240 25 C -0.153 4.153 26 C -0.173 4.173 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.227 0.773 33 H 0.228 0.772 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.618 -16.586 2.564 22.926 hybrid contribution 1.555 0.977 0.718 1.972 sum 17.173 -15.609 3.282 23.438 Atomic orbital electron populations 1.70043 1.05822 1.27397 1.47219 1.25207 0.95792 0.98587 0.97006 0.85845 0.78684 0.80212 0.79032 1.19671 1.20389 1.19675 1.21191 0.91576 0.81112 1.52514 0.89505 1.83982 1.33825 1.11137 1.80096 1.19266 0.90058 0.88258 0.95593 1.20964 0.93705 0.98172 1.08495 1.20240 0.98073 0.90991 1.05195 1.17257 0.90066 0.84533 1.05190 1.42549 0.99729 1.02548 1.81471 1.17592 0.84736 1.00913 0.87807 1.22113 0.94309 0.97873 0.98925 1.20949 0.93579 1.06360 0.97326 1.18877 0.85151 0.95597 0.95113 1.42379 1.02804 1.83639 1.12515 1.22019 0.89635 1.05170 0.95904 1.67355 1.06193 1.09871 1.32294 1.21443 0.96327 0.79053 1.02785 1.23263 1.00961 1.00489 0.98510 1.23511 1.04451 1.03527 0.92472 1.20186 0.91075 0.97496 1.06501 1.20007 0.99337 0.89801 1.08162 0.92234 0.85530 0.88070 0.84615 0.84979 0.77324 0.77177 0.83293 0.85132 0.89328 0.88374 0.88737 0.88047 0.86693 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.67 55.48 0.76 -25.38 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.39 -11.15 9.48 30.87 0.29 -10.86 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 9 O -0.19 -5.44 9.75 0.00 0.00 -5.44 16 10 C 0.12 3.01 6.65 -39.08 -0.26 2.75 16 11 C -0.19 -4.43 9.16 -39.42 -0.36 -4.79 16 12 C -0.12 -2.50 9.31 -39.40 -0.37 -2.87 16 13 C 0.12 2.31 6.52 -83.68 -0.55 1.77 16 14 N -0.55 -8.72 3.06 -106.42 -0.33 -9.05 16 15 C 0.32 4.71 2.88 -154.75 -0.45 4.27 16 16 C -0.11 -1.39 9.84 -39.25 -0.39 -1.77 16 17 C -0.15 -1.56 10.04 -39.13 -0.39 -1.96 16 18 C 0.16 1.56 6.79 -83.52 -0.57 0.99 16 19 N -0.87 -5.30 9.11 32.53 0.30 -5.00 16 20 C 0.04 0.43 11.05 -17.34 -0.19 0.24 16 21 N -0.45 -6.61 9.91 -12.21 -0.12 -6.74 16 22 C 0.11 1.44 6.15 -67.93 -0.42 1.02 16 23 C -0.19 -2.16 9.87 -26.69 -0.26 -2.42 16 24 C -0.20 -2.43 10.20 -26.69 -0.27 -2.70 16 25 C -0.13 -2.43 9.31 -39.40 -0.37 -2.80 16 26 C -0.15 -3.31 9.98 -39.42 -0.39 -3.70 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.13 2.91 5.63 -52.49 -0.30 2.62 16 29 H 0.10 1.97 6.99 -52.49 -0.37 1.60 16 30 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.40 1.72 8.86 -40.82 -0.36 1.36 16 33 H 0.40 1.72 8.85 -40.82 -0.36 1.36 16 34 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.57 6.11 -51.93 -0.32 1.25 16 36 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.42 7.66 -51.93 -0.40 1.02 16 40 H 0.12 1.76 5.98 -52.48 -0.31 1.45 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -33.66 348.22 -8.92 -42.58 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.72 Total: 9.53 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -5.03 Total: -21.87 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.61 Total: -46.16 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: 0.00 Total: -5.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.66 -8.92 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.323 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds