Wall clock time and date at job start Fri Apr 10 2020 22:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86796 * 119.99662 * 2 1 4 4 H 1.48506 * 109.46997 * 240.00058 * 3 2 1 5 5 H 1.48503 * 109.47536 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47480 * 120.00042 * 3 2 1 7 7 C 1.38612 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99725 * 179.97438 * 7 2 1 9 9 O 1.34810 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.35786 * 116.99873 * 185.06296 * 9 7 2 11 11 C 1.38917 * 119.99425 * 354.34233 * 10 9 7 12 12 C 1.37986 * 120.00704 * 179.97438 * 11 10 9 13 13 C 1.38973 * 119.99532 * 359.97438 * 12 11 10 14 14 N 1.39811 * 120.00507 * 180.02562 * 13 12 11 15 15 C 1.39340 * 120.00185 * 5.01640 * 14 13 12 16 16 C 1.39108 * 119.62622 * 85.11664 * 15 14 13 17 17 C 1.38269 * 119.17822 * 180.25213 * 16 15 14 18 18 C 1.39420 * 118.44020 * 359.49948 * 17 16 15 19 19 N 1.40015 * 120.40848 * 180.23165 * 18 17 16 20 20 C 1.38662 * 119.18820 * 0.25683 * 18 17 16 21 21 N 1.31968 * 120.74981 * 359.97438 * 20 18 17 22 22 C 1.46502 * 119.99719 * 185.02249 * 14 13 12 23 23 C 1.53005 * 117.49807 * 193.28969 * 22 14 13 24 24 C 1.53001 * 117.49759 * 124.63139 * 22 14 13 25 25 C 1.38965 * 119.98316 * 0.27821 * 13 12 11 26 26 C 1.37989 * 119.99747 * 359.42481 * 25 13 12 27 27 H 0.96996 * 119.99977 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99231 * 359.97205 * 11 10 9 29 29 H 1.08000 * 120.00114 * 180.02562 * 12 11 10 30 30 H 1.08005 * 120.40769 * 0.02981 * 16 15 14 31 31 H 1.07992 * 120.78029 * 179.77834 * 17 16 15 32 32 H 0.96998 * 119.99823 * 0.02562 * 19 18 17 33 33 H 0.96992 * 120.00205 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.62488 * 180.02562 * 20 18 17 35 35 H 1.08998 * 115.54830 * 338.96166 * 22 14 13 36 36 H 1.09001 * 117.49703 * 359.97438 * 23 22 14 37 37 H 1.08996 * 117.49662 * 145.01957 * 23 22 14 38 38 H 1.09004 * 117.49960 * 214.97922 * 24 22 14 39 39 H 1.09005 * 117.50211 * 359.97438 * 24 22 14 40 40 H 1.08007 * 120.00201 * 179.72466 * 25 13 12 41 41 H 1.07996 * 120.00019 * 180.27666 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2126 5 1 1.2848 2.7465 -0.0006 6 1 3.1036 1.6966 1.2125 7 6 2.0090 -1.2004 0.0005 8 1 3.0890 -1.2003 0.0001 9 8 1.3350 -2.3679 0.0005 10 6 2.0704 -3.5043 0.1078 11 6 3.4579 -3.4376 0.0928 12 6 4.2055 -4.5922 0.2024 13 6 3.5703 -5.8218 0.3283 14 7 4.3276 -6.9918 0.4399 15 6 5.7160 -6.9171 0.5301 16 6 6.3148 -6.7157 1.7694 17 6 7.6931 -6.6378 1.8475 18 6 8.4334 -6.7756 0.6742 19 7 9.8316 -6.7085 0.7064 20 6 7.7681 -6.9795 -0.5252 21 7 6.4506 -7.0440 -0.5635 22 6 3.6612 -8.2963 0.4618 23 6 4.4917 -9.5066 0.8936 24 6 4.1002 -9.3314 -0.5759 25 6 2.1823 -5.8887 0.3381 26 6 1.4351 -4.7332 0.2346 27 1 -0.4850 0.8400 0.0004 28 1 3.9514 -2.4819 -0.0047 29 1 5.2841 -4.5402 0.1911 30 1 5.7104 -6.6178 2.6591 31 1 8.1848 -6.4784 2.7957 32 1 10.2910 -6.5656 1.5487 33 1 10.3408 -6.8048 -0.1135 34 1 8.3347 -7.0877 -1.4383 35 1 2.6085 -8.2817 0.7440 36 1 5.5340 -9.3323 1.1608 37 1 3.9852 -10.2885 1.4594 38 1 3.3364 -9.9981 -0.9761 39 1 4.8846 -9.0416 -1.2752 40 1 1.6883 -6.8447 0.4315 41 1 0.3565 -4.7847 0.2467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212607234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:18 Heat of formation + Delta-G solvation = 69.742088 kcal Electronic energy + Delta-G solvation = -24712.219030 eV Core-core repulsion = 21172.550741 eV Total energy + Delta-G solvation = -3539.668290 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65880 -40.57653 -39.25035 -37.66499 -36.01920 -34.53277 -33.87812 -32.85990 -31.85078 -30.03047 -28.18931 -27.13631 -24.89598 -24.46396 -23.43432 -23.13084 -22.74637 -21.38280 -19.63302 -19.18340 -18.40106 -18.29465 -17.87384 -17.61795 -16.26542 -16.11180 -16.03021 -15.73877 -15.41281 -15.31042 -15.14483 -14.64515 -14.51361 -14.38860 -14.08106 -13.83324 -13.67426 -13.51269 -13.19714 -12.95290 -12.75671 -12.40248 -12.29255 -12.13367 -12.08867 -11.97655 -11.30085 -11.12867 -10.82000 -10.58366 -10.56624 -9.90061 -9.81293 -8.56909 -8.39919 -7.95250 -6.04123 0.24486 0.41001 0.55881 0.84999 1.35905 1.46784 1.52042 1.99740 2.22398 2.83540 2.84908 2.90176 3.01691 3.23805 3.61488 3.65386 3.87912 3.94481 3.95126 4.07897 4.09388 4.19601 4.23972 4.27744 4.54096 4.60359 4.75056 4.77387 4.79294 4.90699 5.00911 5.06666 5.08144 5.15863 5.24162 5.28804 5.41812 5.49195 5.55005 5.75239 5.96701 6.09489 6.39194 6.60313 6.71149 6.92618 7.05302 7.19413 7.90238 8.83946 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003548 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.784839 B = 7889.186505 C = 9356.480311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.025 4.025 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.409 4.409 8 H 0.095 0.905 9 O -0.236 6.236 10 C 0.074 3.926 11 C -0.196 4.196 12 C -0.132 4.132 13 C 0.151 3.849 14 N -0.548 5.548 15 C 0.282 3.718 16 C -0.115 4.115 17 C -0.153 4.153 18 C 0.175 3.825 19 N -0.854 5.854 20 C 0.022 3.978 21 N -0.475 5.475 22 C 0.081 3.919 23 C -0.170 4.170 24 C -0.197 4.197 25 C -0.127 4.127 26 C -0.151 4.151 27 H 0.271 0.729 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.155 0.845 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.505 -18.647 4.188 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.221 4.221 3 Si 0.834 3.166 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.112 0.888 9 O -0.144 6.144 10 C 0.024 3.976 11 C -0.215 4.215 12 C -0.154 4.154 13 C 0.054 3.946 14 N -0.259 5.259 15 C 0.054 3.946 16 C -0.138 4.138 17 C -0.183 4.183 18 C 0.066 3.934 19 N -0.394 5.394 20 C -0.143 4.143 21 N -0.185 5.185 22 C -0.023 4.023 23 C -0.208 4.208 24 C -0.237 4.237 25 C -0.148 4.148 26 C -0.171 4.171 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.242 0.758 34 H 0.186 0.814 35 H 0.162 0.838 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.172 0.828 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.724 -18.711 3.382 26.686 hybrid contribution 0.922 1.200 0.478 1.587 sum 19.647 -17.511 3.860 26.599 Atomic orbital electron populations 1.70193 1.07858 1.28560 1.49693 1.26493 0.96842 1.02487 0.96295 0.84710 0.77425 0.74696 0.79752 1.18465 1.19491 1.18278 1.21682 0.92243 0.81838 1.52802 0.88776 1.83934 1.35324 1.12212 1.82935 1.19723 0.91033 0.88264 0.98572 1.20948 0.93220 0.98776 1.08604 1.20257 0.98327 0.90881 1.05923 1.17450 0.90541 0.85395 1.01211 1.42692 1.00516 1.02385 1.80275 1.17700 0.84167 1.04033 0.88681 1.22136 0.95505 0.98035 0.98114 1.21233 0.92784 1.05577 0.98733 1.18886 0.86615 0.93622 0.94315 1.42389 1.01368 1.81726 1.13943 1.22385 0.88978 1.05403 0.97502 1.67234 1.07724 1.10781 1.32794 1.21801 0.97297 0.78491 1.04681 1.23270 1.00318 0.99399 0.97812 1.23475 1.04315 1.03198 0.92671 1.20507 0.91043 0.97992 1.05285 1.20267 0.99954 0.89679 1.07201 0.92033 0.86610 0.87238 0.84576 0.82148 0.75841 0.75832 0.81425 0.83843 0.90219 0.85702 0.86723 0.90185 0.82794 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.32 13.67 21.61 0.30 -58.03 16 2 C -0.02 -1.44 5.49 84.82 0.47 -0.98 16 3 Si 1.01 44.48 29.55 68.60 2.03 46.51 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.41 -24.84 9.48 67.91 0.64 -24.19 16 8 H 0.09 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.24 -14.77 9.75 -22.93 -0.22 -14.99 16 10 C 0.07 3.87 6.65 22.60 0.15 4.02 16 11 C -0.20 -9.33 9.16 22.37 0.20 -9.13 16 12 C -0.13 -5.38 9.31 22.39 0.21 -5.17 16 13 C 0.15 5.52 6.52 38.22 0.25 5.77 16 14 N -0.55 -16.55 3.06 -490.60 -1.50 -18.05 16 15 C 0.28 7.96 2.88 132.96 0.38 8.34 16 16 C -0.11 -2.72 9.84 22.49 0.22 -2.50 16 17 C -0.15 -2.71 10.04 22.56 0.23 -2.49 16 18 C 0.17 2.90 6.79 38.22 0.26 3.16 16 19 N -0.85 -7.13 9.11 -51.00 -0.46 -7.60 16 20 C 0.02 0.47 11.05 84.77 0.94 1.40 16 21 N -0.47 -13.48 9.91 -192.55 -1.91 -15.39 16 22 C 0.08 1.95 6.15 44.99 0.28 2.23 16 23 C -0.17 -3.29 9.87 30.62 0.30 -2.98 16 24 C -0.20 -4.33 10.20 30.62 0.31 -4.01 16 25 C -0.13 -4.57 9.31 22.38 0.21 -4.36 16 26 C -0.15 -6.68 9.98 22.37 0.22 -6.45 16 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 29 H 0.11 4.26 6.99 -2.91 -0.02 4.24 16 30 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.41 1.84 8.86 -92.71 -0.82 1.02 16 33 H 0.41 2.00 8.85 -92.71 -0.82 1.18 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.14 2.98 6.11 -2.39 -0.01 2.96 16 36 H 0.08 1.73 7.01 -2.39 -0.02 1.71 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.08 2.14 7.66 -2.38 -0.02 2.12 16 40 H 0.15 4.29 5.98 -2.91 -0.02 4.28 16 41 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -78.56 348.22 2.96 -75.61 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.54 Total: 29.27 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 5.27 Total: -37.34 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.58 Total: -99.06 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.22 Total: -14.99 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -78.56 2.96 -75.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.351 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds