Wall clock time and date at job start Fri Apr 10 2020 22:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38301 * 119.96403 * 2 1 4 4 C 1.38251 * 120.14122 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.07356 * 0.04632 * 4 3 2 6 6 C 1.38846 * 119.92650 * 359.97342 * 5 4 3 7 7 N 1.39931 * 120.07176 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99739 * 293.88433 * 7 6 5 9 9 C 1.34775 * 120.00250 * 113.88661 * 7 6 5 10 10 O 1.21579 * 120.00202 * 5.75386 * 9 7 6 11 11 N 1.34780 * 120.00127 * 185.74696 * 9 7 6 12 12 C 1.39448 * 120.00020 * 185.69544 * 11 9 7 13 13 C 1.38643 * 119.64557 * 174.66725 * 12 11 9 14 14 C 1.40819 * 118.67565 * 179.97438 * 13 12 11 15 15 C 1.41545 * 121.00227 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99963 * 212.10248 * 15 14 13 17 17 C 1.40023 * 120.00100 * 32.09470 * 15 14 13 18 18 N 1.30748 * 120.00196 * 6.48188 * 17 15 14 19 19 Si 1.86805 * 120.00373 * 186.47956 * 17 15 14 20 20 H 1.48503 * 109.46718 * 60.00068 * 19 17 15 21 21 H 1.48500 * 109.47118 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46951 * 300.00192 * 19 17 15 23 23 C 1.41166 * 118.00178 * 359.97438 * 14 13 12 24 24 C 1.36587 * 119.13113 * 0.02562 * 23 14 13 25 25 N 1.32073 * 121.25432 * 359.72337 * 24 23 14 26 26 C 1.38088 * 119.96653 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.46875 * 269.95434 * 1 2 3 28 28 H 1.08993 * 109.47488 * 29.95529 * 1 2 3 29 29 H 1.08998 * 109.47267 * 149.95833 * 1 2 3 30 30 H 1.08009 * 119.92679 * 0.04334 * 3 2 1 31 31 H 1.08001 * 119.96480 * 180.02562 * 4 3 2 32 32 H 1.07993 * 120.03686 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.46595 * 90.00120 * 8 7 6 34 34 H 1.09001 * 109.47258 * 210.00076 * 8 7 6 35 35 H 1.08996 * 109.47080 * 330.00542 * 8 7 6 36 36 H 0.96999 * 119.99747 * 5.69674 * 11 9 7 37 37 H 1.08001 * 120.66625 * 0.02562 * 13 12 11 38 38 H 0.96998 * 120.00540 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.43374 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.37449 * 179.97438 * 24 23 14 41 41 H 1.08000 * 120.03485 * 0.25457 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2024 -0.0005 5 6 4.2762 0.0092 -0.0020 6 6 3.5857 -1.1954 -0.0025 7 7 4.2876 -2.4059 -0.0045 8 6 5.0981 -2.7807 -1.1660 9 6 4.2181 -3.2271 1.0619 10 8 3.4651 -2.9679 1.9807 11 7 4.9830 -4.3357 1.1099 12 6 4.8263 -5.2464 2.1542 13 6 5.5367 -6.4369 2.1385 14 6 5.3633 -7.3414 3.2037 15 6 6.0634 -8.5712 3.2372 16 1 5.6088 -9.4391 3.6917 17 6 7.3452 -8.6624 2.6811 18 7 7.9469 -7.5866 2.2453 19 14 8.1957 -10.3213 2.5618 20 1 7.3771 -11.2385 1.7288 21 1 9.5327 -10.1485 1.9392 22 1 8.3531 -10.8958 3.9221 23 6 4.4701 -6.9850 4.2371 24 6 3.8141 -5.7891 4.1659 25 7 4.0046 -4.9622 3.1538 26 6 2.1968 -1.1963 -0.0005 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3634 0.8903 -0.5131 29 1 -0.3634 -0.8896 -0.5145 30 1 1.6560 2.1325 0.0007 31 1 4.1169 2.1397 -0.0001 32 1 5.3562 0.0132 -0.0029 33 1 6.1124 -2.4028 -1.0383 34 1 5.1236 -3.8667 -1.2561 35 1 4.6612 -2.3515 -2.0676 36 1 5.6426 -4.5001 0.4179 37 1 6.2103 -6.6656 1.3259 38 1 8.8350 -7.6497 1.8604 39 1 4.3071 -7.6495 5.0727 40 1 3.1296 -5.5126 4.9542 41 1 1.6568 -2.1316 -0.0051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219701053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:26 Heat of formation + Delta-G solvation = 47.582196 kcal Electronic energy + Delta-G solvation = -24624.869164 eV Core-core repulsion = 21084.239950 eV Total energy + Delta-G solvation = -3540.629215 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51570 -39.06983 -37.93924 -35.34897 -34.34598 -33.75488 -32.49598 -30.56151 -30.25910 -28.44626 -26.94018 -26.55569 -25.97279 -23.30425 -21.99612 -21.82480 -20.80766 -19.40994 -18.03603 -17.57428 -16.76458 -16.05646 -15.92479 -15.52035 -15.09167 -14.58035 -14.25383 -14.18062 -13.97327 -13.75320 -13.43740 -13.24533 -13.10016 -12.86720 -12.62229 -12.50214 -12.32909 -12.27834 -11.95261 -11.48723 -11.41472 -11.22078 -11.17024 -10.91639 -10.29331 -10.17252 -9.77748 -9.60682 -9.37888 -9.18041 -8.70595 -8.26399 -7.92760 -7.73768 -7.05456 -6.74160 -4.62657 1.28698 1.41016 2.66410 2.80518 2.82132 3.01708 3.04717 3.22920 3.67840 3.78515 3.87460 4.26278 4.71945 4.81270 4.86823 5.00677 5.10692 5.24897 5.30862 5.36764 5.55395 5.56478 5.58587 5.64997 5.70566 5.84612 5.86570 6.08547 6.34039 6.41872 6.52058 6.56783 6.59742 6.70031 6.77648 6.93331 7.06144 7.12960 7.26255 7.38857 7.46461 7.85530 8.05367 8.27825 8.44448 8.71164 8.76881 9.09276 9.68559 10.14573 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.003003 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.414734 B = 9321.366486 C =10009.739828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.127 4.127 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.173 3.827 7 N -0.600 5.600 8 C 0.079 3.921 9 C 0.694 3.306 10 O -0.516 6.516 11 N -0.664 5.664 12 C 0.351 3.649 13 C -0.234 4.234 14 C 0.147 3.853 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.802 5.802 19 Si 0.915 3.085 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.277 4.277 24 C 0.118 3.882 25 N -0.549 5.549 26 C -0.101 4.101 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.405 0.595 37 H 0.127 0.873 38 H 0.281 0.719 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 11.878 -9.871 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.146 4.146 4 C -0.128 4.128 5 C -0.150 4.150 6 C 0.082 3.918 7 N -0.336 5.336 8 C -0.064 4.064 9 C 0.396 3.604 10 O -0.385 6.385 11 N -0.313 5.313 12 C 0.125 3.875 13 C -0.260 4.260 14 C 0.139 3.861 15 C -0.492 4.492 16 H 0.099 0.901 17 C -0.142 4.142 18 N -0.428 5.428 19 Si 0.740 3.260 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.301 4.301 24 C -0.036 4.036 25 N -0.267 5.267 26 C -0.121 4.121 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.241 0.759 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.513 12.940 -9.321 16.873 hybrid contribution 1.577 -1.651 -0.404 2.319 sum -3.936 11.288 -9.724 15.410 Atomic orbital electron populations 1.20780 0.91086 1.02507 1.02550 1.19782 0.96103 0.92643 0.99457 1.20994 0.94204 0.97346 1.02008 1.20926 0.94166 0.97383 1.00319 1.21203 1.00027 0.91642 1.02106 1.17282 0.90269 0.84355 0.99928 1.44682 1.52030 1.19522 1.17378 1.21802 0.95219 1.01276 0.88066 1.16012 0.82064 0.80089 0.82279 1.91038 1.39719 1.72142 1.35594 1.42667 1.39639 1.21489 1.27498 1.17984 0.94580 0.87318 0.87618 1.21527 1.06735 0.94999 1.02706 1.17570 0.88268 0.92172 0.88122 1.19495 0.99657 0.96389 1.33708 0.90110 1.25902 0.97541 0.98163 0.92545 1.69730 1.13686 1.29271 1.30145 0.86257 0.78305 0.81870 0.79617 1.18863 1.20331 1.18953 1.21765 1.07430 0.99587 1.01291 1.21501 0.96992 0.90593 0.94529 1.67207 1.21990 1.34449 1.03097 1.21165 0.93180 0.98092 0.99671 0.90987 0.91643 0.91570 0.86141 0.85874 0.86012 0.92415 0.90745 0.90728 0.75866 0.85520 0.90846 0.87877 0.85927 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.08 -0.98 5.88 -104.65 -0.62 -1.59 16 3 C -0.13 -1.40 9.70 -39.55 -0.38 -1.78 16 4 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 5 C -0.13 -1.68 9.83 -39.39 -0.39 -2.07 16 6 C 0.17 2.62 4.87 -83.69 -0.41 2.21 16 7 N -0.60 -9.41 2.93 -126.23 -0.37 -9.78 16 8 C 0.08 0.87 9.90 59.85 0.59 1.46 16 9 C 0.69 14.19 8.11 -86.92 -0.70 13.49 16 10 O -0.52 -12.72 14.11 5.30 0.07 -12.65 16 11 N -0.66 -13.55 5.17 -15.87 -0.08 -13.63 16 12 C 0.35 8.66 7.42 -154.70 -1.15 7.51 16 13 C -0.23 -5.94 8.58 -38.46 -0.33 -6.27 16 14 C 0.15 3.87 5.55 -106.55 -0.59 3.28 16 15 C -0.46 -11.84 9.12 -37.65 -0.34 -12.18 16 16 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 17 C 0.08 1.84 5.33 -17.34 -0.09 1.74 16 18 N -0.80 -19.85 10.93 55.55 0.61 -19.24 16 19 Si 0.92 18.04 29.57 -169.99 -5.03 13.02 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 23 C -0.28 -6.83 9.85 -39.07 -0.38 -7.21 16 24 C 0.12 2.87 11.10 -18.04 -0.20 2.67 16 25 N -0.55 -14.31 7.86 -12.76 -0.10 -14.41 16 26 C -0.10 -1.50 8.89 -39.39 -0.35 -1.85 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.49 8.08 -51.93 -0.42 0.08 16 29 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.78 6.72 -51.93 -0.35 0.43 16 35 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.41 6.83 6.70 -40.82 -0.27 6.56 16 37 H 0.13 3.18 6.44 -52.49 -0.34 2.84 16 38 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 39 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 41 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -32.57 350.91 -10.14 -42.71 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.15 Total: 11.62 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -5.38 Total: -2.93 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.05 Total: -57.06 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.57 -10.14 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219701053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.293 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds