Wall clock time and date at job start Fri Apr 10 2020 22:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38301 * 119.96403 * 2 1 4 4 C 1.38251 * 120.14122 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.07356 * 0.04632 * 4 3 2 6 6 C 1.38846 * 119.92650 * 359.97342 * 5 4 3 7 7 N 1.39931 * 120.07176 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99739 * 293.88433 * 7 6 5 9 9 C 1.34775 * 120.00250 * 113.88661 * 7 6 5 10 10 O 1.21579 * 120.00202 * 5.75386 * 9 7 6 11 11 N 1.34780 * 120.00127 * 185.74696 * 9 7 6 12 12 C 1.39448 * 120.00020 * 185.69544 * 11 9 7 13 13 C 1.38643 * 119.64557 * 174.66725 * 12 11 9 14 14 C 1.40819 * 118.67565 * 179.97438 * 13 12 11 15 15 C 1.41545 * 121.00227 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99963 * 212.10248 * 15 14 13 17 17 C 1.40023 * 120.00100 * 32.09470 * 15 14 13 18 18 N 1.30748 * 120.00196 * 6.48188 * 17 15 14 19 19 Si 1.86805 * 120.00373 * 186.47956 * 17 15 14 20 20 H 1.48503 * 109.46718 * 60.00068 * 19 17 15 21 21 H 1.48500 * 109.47118 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46951 * 300.00192 * 19 17 15 23 23 C 1.41166 * 118.00178 * 359.97438 * 14 13 12 24 24 C 1.36587 * 119.13113 * 0.02562 * 23 14 13 25 25 N 1.32073 * 121.25432 * 359.72337 * 24 23 14 26 26 C 1.38088 * 119.96653 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.46875 * 269.95434 * 1 2 3 28 28 H 1.08993 * 109.47488 * 29.95529 * 1 2 3 29 29 H 1.08998 * 109.47267 * 149.95833 * 1 2 3 30 30 H 1.08009 * 119.92679 * 0.04334 * 3 2 1 31 31 H 1.08001 * 119.96480 * 180.02562 * 4 3 2 32 32 H 1.07993 * 120.03686 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.46595 * 90.00120 * 8 7 6 34 34 H 1.09001 * 109.47258 * 210.00076 * 8 7 6 35 35 H 1.08996 * 109.47080 * 330.00542 * 8 7 6 36 36 H 0.96999 * 119.99747 * 5.69674 * 11 9 7 37 37 H 1.08001 * 120.66625 * 0.02562 * 13 12 11 38 38 H 0.96998 * 120.00540 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.43374 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.37449 * 179.97438 * 24 23 14 41 41 H 1.08000 * 120.03485 * 0.25457 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2024 -0.0005 5 6 4.2762 0.0092 -0.0020 6 6 3.5857 -1.1954 -0.0025 7 7 4.2876 -2.4059 -0.0045 8 6 5.0981 -2.7807 -1.1660 9 6 4.2181 -3.2271 1.0619 10 8 3.4651 -2.9679 1.9807 11 7 4.9830 -4.3357 1.1099 12 6 4.8263 -5.2464 2.1542 13 6 5.5367 -6.4369 2.1385 14 6 5.3633 -7.3414 3.2037 15 6 6.0634 -8.5712 3.2372 16 1 5.6088 -9.4391 3.6917 17 6 7.3452 -8.6624 2.6811 18 7 7.9469 -7.5866 2.2453 19 14 8.1957 -10.3213 2.5618 20 1 7.3771 -11.2385 1.7288 21 1 9.5327 -10.1485 1.9392 22 1 8.3531 -10.8958 3.9221 23 6 4.4701 -6.9850 4.2371 24 6 3.8141 -5.7891 4.1659 25 7 4.0046 -4.9622 3.1538 26 6 2.1968 -1.1963 -0.0005 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3634 0.8903 -0.5131 29 1 -0.3634 -0.8896 -0.5145 30 1 1.6560 2.1325 0.0007 31 1 4.1169 2.1397 -0.0001 32 1 5.3562 0.0132 -0.0029 33 1 6.1124 -2.4028 -1.0383 34 1 5.1236 -3.8667 -1.2561 35 1 4.6612 -2.3515 -2.0676 36 1 5.6426 -4.5001 0.4179 37 1 6.2103 -6.6656 1.3259 38 1 8.8350 -7.6497 1.8604 39 1 4.3071 -7.6495 5.0727 40 1 3.1296 -5.5126 4.9542 41 1 1.6568 -2.1316 -0.0051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219701053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:25 Heat of formation + Delta-G solvation = 30.321712 kcal Electronic energy + Delta-G solvation = -24625.617635 eV Core-core repulsion = 21084.239950 eV Total energy + Delta-G solvation = -3541.377685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92536 -40.49574 -39.47769 -36.67603 -36.12754 -35.54220 -33.41621 -32.45116 -31.45484 -30.12196 -27.93168 -27.82205 -27.60580 -24.64231 -23.84430 -23.06664 -22.21652 -20.88145 -19.58918 -19.25430 -17.96809 -17.48695 -17.13482 -17.09112 -16.59122 -16.09479 -16.00490 -15.77596 -15.22893 -14.83348 -14.66165 -14.55038 -14.51493 -14.32149 -14.04670 -13.94991 -13.47848 -13.20760 -13.07926 -12.86635 -12.85496 -12.68688 -12.38401 -12.13118 -12.09549 -11.91259 -11.55229 -11.30496 -11.17966 -10.30443 -9.88676 -9.68955 -9.65918 -9.35969 -8.89133 -8.57970 -6.58186 0.28791 0.43753 0.78722 0.99916 1.42051 1.45665 1.53344 1.56971 2.13251 2.22121 2.72621 2.81219 2.90445 3.71027 3.91440 4.00136 4.05476 4.10458 4.20316 4.41748 4.44589 4.48059 4.62875 4.65991 4.72523 4.80279 4.80443 4.88764 4.89162 4.95387 5.06075 5.22277 5.24678 5.38622 5.44617 5.47406 5.57362 5.60676 5.67106 5.77591 5.94498 6.14882 6.21839 6.53239 6.70880 6.79321 6.85404 7.48490 7.82910 8.33251 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.003003 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.414734 B = 9321.366486 C =10009.739828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.104 4.104 5 C -0.137 4.137 6 C 0.142 3.858 7 N -0.590 5.590 8 C 0.071 3.929 9 C 0.691 3.309 10 O -0.566 6.566 11 N -0.656 5.656 12 C 0.348 3.652 13 C -0.247 4.247 14 C 0.119 3.881 15 C -0.489 4.489 16 H 0.084 0.916 17 C 0.037 3.963 18 N -0.825 5.825 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.262 1.262 23 C -0.289 4.289 24 C 0.111 3.889 25 N -0.576 5.576 26 C -0.128 4.128 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.420 0.580 37 H 0.124 0.876 38 H 0.290 0.710 39 H 0.119 0.881 40 H 0.148 0.852 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 13.035 -10.997 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.122 4.122 5 C -0.157 4.157 6 C 0.051 3.949 7 N -0.324 5.324 8 C -0.069 4.069 9 C 0.393 3.607 10 O -0.438 6.438 11 N -0.307 5.307 12 C 0.121 3.879 13 C -0.273 4.273 14 C 0.110 3.890 15 C -0.520 4.520 16 H 0.102 0.898 17 C -0.179 4.179 18 N -0.451 5.451 19 Si 0.811 3.189 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.186 1.186 23 C -0.312 4.312 24 C -0.042 4.042 25 N -0.295 5.295 26 C -0.148 4.148 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.259 0.741 37 H 0.142 0.858 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.165 0.835 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.723 14.134 -10.512 18.237 hybrid contribution 1.312 -1.888 -0.099 2.301 sum -3.412 12.246 -10.612 16.559 Atomic orbital electron populations 1.20829 0.89414 1.03770 1.02799 1.20125 0.97521 0.92335 0.98712 1.21421 0.94489 0.97983 1.00174 1.21358 0.94480 0.97950 0.98431 1.21391 1.00733 0.91419 1.02109 1.17601 0.90600 0.84686 1.02024 1.44613 1.51854 1.19030 1.16942 1.22108 0.95794 1.01847 0.87199 1.16200 0.81432 0.80188 0.82921 1.90985 1.41571 1.73370 1.37923 1.42538 1.40094 1.21090 1.26954 1.18186 0.93810 0.87811 0.88083 1.21490 1.07445 0.95601 1.02797 1.18002 0.89066 0.93018 0.88874 1.19795 1.00759 0.96409 1.35031 0.89762 1.26786 0.97590 1.02036 0.91462 1.69779 1.14330 1.31301 1.29710 0.85127 0.77365 0.76764 0.79690 1.18314 1.19144 1.18613 1.21950 1.07521 1.00114 1.01643 1.21938 0.97068 0.90371 0.94789 1.67327 1.22943 1.35274 1.03999 1.21172 0.93468 0.98304 1.01810 0.91131 0.88919 0.91831 0.82787 0.82513 0.84897 0.90386 0.90434 0.88436 0.74145 0.85825 0.89897 0.86336 0.83452 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.09 -2.05 5.88 -19.88 -0.12 -2.17 16 3 C -0.12 -2.35 9.70 22.29 0.22 -2.14 16 4 C -0.10 -2.00 10.04 22.25 0.22 -1.78 16 5 C -0.14 -3.34 9.83 22.39 0.22 -3.12 16 6 C 0.14 4.30 4.87 38.15 0.19 4.48 16 7 N -0.59 -18.69 2.93 -671.56 -1.97 -20.65 16 8 C 0.07 1.50 9.90 127.77 1.27 2.77 16 9 C 0.69 29.13 8.11 179.05 1.45 30.58 16 10 O -0.57 -29.07 14.11 -3.97 -0.06 -29.12 16 11 N -0.66 -27.52 5.17 -322.38 -1.67 -29.19 16 12 C 0.35 17.73 7.42 132.77 0.98 18.71 16 13 C -0.25 -12.94 8.58 23.00 0.20 -12.74 16 14 C 0.12 6.41 5.55 -21.11 -0.12 6.30 16 15 C -0.49 -25.41 9.12 23.52 0.21 -25.20 16 16 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 17 C 0.04 1.77 5.33 85.29 0.45 2.22 16 18 N -0.82 -40.83 10.93 21.84 0.24 -40.59 16 19 Si 0.99 36.23 29.57 68.60 2.03 38.26 16 20 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 21 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 23 C -0.29 -14.55 9.85 22.60 0.22 -14.32 16 24 C 0.11 5.55 11.10 84.27 0.94 6.49 16 25 N -0.58 -30.97 7.86 -194.29 -1.53 -32.50 16 26 C -0.13 -3.90 8.89 22.39 0.20 -3.70 16 27 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 29 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.57 6.72 -2.39 -0.02 1.56 16 35 H 0.10 1.62 8.05 -2.39 -0.02 1.60 16 36 H 0.42 14.40 6.70 -92.71 -0.62 13.78 16 37 H 0.12 6.39 6.44 -2.91 -0.02 6.37 16 38 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 39 H 0.12 5.42 8.06 -2.91 -0.02 5.39 16 40 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 41 H 0.10 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -72.96 350.91 4.73 -68.23 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: 0.44 Total: 40.48 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 7.25 Total: 5.08 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -4.92 Total: -122.93 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.06 Total: -29.12 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -72.96 4.73 -68.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219701053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.552 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds