Wall clock time and date at job start Fri Apr 10 2020 22:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46558 * 29.99722 * 3 2 1 6 6 H 1.48489 * 109.47282 * 149.99733 * 3 2 1 7 7 C 1.37883 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00163 * 169.99954 * 10 9 7 12 12 C 1.53934 * 86.18058 * 222.41402 * 11 10 9 13 13 O 1.42905 * 113.73169 * 138.07945 * 12 11 10 14 14 C 1.35624 * 117.00090 * 151.90188 * 13 12 11 15 15 C 1.39030 * 119.55316 * 179.97438 * 14 13 12 16 16 C 1.38116 * 119.24496 * 179.97438 * 15 14 13 17 17 C 1.39966 * 118.37414 * 0.02562 * 16 15 14 18 18 C 1.48279 * 120.47923 * 179.97438 * 17 16 15 19 19 C 1.39379 * 119.73445 * 179.72901 * 18 17 16 20 20 C 1.38373 * 119.06586 * 179.75442 * 19 18 17 21 21 C 1.38806 * 118.51767 * 0.50995 * 20 19 18 22 22 C 1.38227 * 119.37427 * 359.72522 * 21 20 19 23 23 N 1.31780 * 120.89569 * 0.02847 * 22 21 20 24 24 C 1.39225 * 119.04437 * 359.97438 * 17 16 15 25 25 N 1.31790 * 120.66302 * 359.74635 * 24 17 16 26 26 C 1.48186 * 111.07427 * 70.56351 * 10 9 7 27 27 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47240 * 59.99989 * 9 7 2 29 29 H 1.08996 * 109.46984 * 299.99722 * 9 7 2 30 30 H 1.09001 * 113.75866 * 108.09297 * 11 10 9 31 31 H 1.09001 * 113.75942 * 336.73414 * 11 10 9 32 32 H 1.08998 * 113.73400 * 269.25164 * 12 11 10 33 33 H 1.08001 * 120.38218 * 359.97438 * 15 14 13 34 34 H 1.07996 * 120.81833 * 179.97438 * 16 15 14 35 35 H 1.08002 * 120.46528 * 359.97438 * 19 18 17 36 36 H 1.07998 * 120.73971 * 180.23901 * 20 19 18 37 37 H 1.08001 * 120.31256 * 179.70886 * 21 20 19 38 38 H 1.08001 * 119.55171 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.66971 * 180.02562 * 24 17 16 40 40 H 1.09000 * 113.75847 * 23.23813 * 26 10 9 41 41 H 1.08998 * 113.82742 * 251.81086 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5160 -4.9029 0.2373 12 6 2.6919 -5.2418 1.1711 13 8 2.2952 -5.8757 2.3888 14 6 3.1945 -6.7068 2.9718 15 6 2.8639 -7.3511 4.1586 16 6 3.7845 -8.1964 4.7466 17 6 5.0232 -8.3710 4.1187 18 6 6.0462 -9.2671 4.7095 19 6 7.2724 -9.4340 4.0683 20 6 8.2189 -10.2696 4.6345 21 6 7.9043 -10.9205 5.8194 22 6 6.6667 -10.7130 6.3990 23 7 5.7848 -9.9079 5.8415 24 6 5.2810 -7.6910 2.9315 25 7 4.3726 -6.8975 2.4005 26 6 2.9005 -3.7223 1.3030 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6240 -2.5576 0.8880 30 1 1.4580 -5.5403 -0.6450 31 1 0.5611 -4.8005 0.7529 32 1 3.5138 -5.7558 0.6727 33 1 1.8983 -7.1925 4.6156 34 1 3.5545 -8.7095 5.6686 35 1 7.4821 -8.9156 3.1443 36 1 9.1793 -10.4155 4.1626 37 1 8.6196 -11.5829 6.2840 38 1 6.4190 -11.2177 7.3212 39 1 6.2333 -7.8186 2.4383 40 1 2.3515 -3.2739 2.1310 41 1 3.9467 -3.4183 1.2706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227293890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:30 Heat of formation + Delta-G solvation = 77.647423 kcal Electronic energy + Delta-G solvation = -23638.923440 eV Core-core repulsion = 20099.597952 eV Total energy + Delta-G solvation = -3539.325488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00968 -40.20598 -39.10611 -36.92582 -33.45896 -32.90632 -32.68955 -32.19989 -29.62630 -28.82724 -25.75532 -25.31420 -24.70261 -24.26025 -23.02611 -22.10139 -21.31898 -19.36600 -18.58229 -17.69478 -17.09474 -16.46290 -16.38553 -15.89902 -15.52759 -15.09699 -14.93112 -14.66234 -14.45857 -14.34183 -14.05160 -13.65257 -13.55628 -13.25149 -12.60436 -12.49889 -12.35027 -12.08552 -12.04597 -11.87694 -11.50525 -10.93757 -10.67583 -10.53955 -10.31237 -10.21816 -10.07087 -9.86667 -9.72070 -9.66646 -9.51651 -9.17723 -8.50127 -8.19556 -7.86459 -6.05824 -4.07807 0.23285 0.88166 1.08780 1.48303 3.09860 3.31446 3.35303 3.37033 3.41208 3.77701 3.82294 4.07673 4.30346 4.41242 4.46590 4.62587 4.70490 4.73934 4.76802 4.92855 4.99740 5.02571 5.11407 5.28950 5.30404 5.47846 5.51850 5.63738 5.73806 5.81428 5.84787 6.04401 6.05970 6.12009 6.25295 6.29974 6.41658 6.48847 6.63049 7.19263 7.37565 7.59406 7.60428 7.73836 7.85235 8.07465 8.38701 8.99167 9.56577 11.05441 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028150 B = 0.002196 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.440648 B =12747.287173 C =13116.413409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.472 5.472 11 C 0.003 3.997 12 C 0.050 3.950 13 O -0.292 6.292 14 C 0.345 3.655 15 C -0.200 4.200 16 C 0.000 4.000 17 C -0.159 4.159 18 C 0.189 3.811 19 C -0.169 4.169 20 C -0.068 4.068 21 C -0.184 4.184 22 C 0.107 3.893 23 N -0.485 5.485 24 C 0.169 3.831 25 N -0.538 5.538 26 C 0.013 3.987 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.001 0.999 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.910 -23.556 11.777 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.197 5.197 11 C -0.126 4.126 12 C -0.007 4.007 13 O -0.197 6.197 14 C 0.166 3.834 15 C -0.221 4.221 16 C -0.026 4.026 17 C -0.163 4.163 18 C 0.053 3.947 19 C -0.189 4.189 20 C -0.094 4.094 21 C -0.204 4.204 22 C -0.051 4.051 23 N -0.194 5.194 24 C 0.010 3.990 25 N -0.261 5.261 26 C -0.116 4.116 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.019 0.981 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.093 0.907 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.170 -22.654 10.862 28.366 hybrid contribution 0.658 0.423 0.950 1.231 sum 13.827 -22.232 11.813 28.723 Atomic orbital electron populations 1.69952 1.06069 1.26890 1.50722 1.24999 0.94903 0.99421 0.95259 0.86464 0.79693 0.82904 0.78175 1.20542 1.21248 1.19837 1.21084 0.93471 0.89886 1.50545 0.91932 1.20223 0.90843 0.88417 0.96812 1.68613 1.21383 1.01945 1.27765 1.24231 0.96214 0.94927 0.97239 1.24991 0.99808 0.93347 0.82533 1.86405 1.38642 1.55020 1.39607 1.20107 0.86674 0.87375 0.89237 1.21125 1.02880 1.01746 0.96368 1.21493 0.90551 0.92504 0.98030 1.19242 0.95389 1.02996 0.98637 1.19526 0.91564 0.93133 0.90485 1.22095 0.94217 1.00767 1.01838 1.21544 0.99175 0.93999 0.94704 1.22173 0.98802 1.02038 0.97352 1.22721 0.89564 0.93961 0.98805 1.67621 1.34298 1.07558 1.09898 1.22515 0.96895 0.88869 0.90694 1.67336 1.02590 1.21012 1.35134 1.24205 1.01458 0.91984 0.93990 0.92837 0.94691 0.98103 0.89442 0.90930 0.86254 0.83664 0.83251 0.84380 0.84588 0.84770 0.82575 0.82220 0.90700 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.66 8.84 -34.43 -0.30 -14.96 16 8 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 9 C 0.16 4.34 4.58 -4.97 -0.02 4.31 16 10 N -0.47 -10.55 6.25 -239.76 -1.50 -12.05 16 11 C 0.00 0.05 7.81 -2.76 -0.02 0.03 16 12 C 0.05 0.86 4.33 -25.80 -0.11 0.75 16 13 O -0.29 -4.83 10.13 -18.57 -0.19 -5.02 16 14 C 0.34 5.04 7.49 -17.05 -0.13 4.91 16 15 C -0.20 -2.43 10.03 -39.33 -0.39 -2.83 16 16 C 0.00 0.00 9.68 -38.98 -0.38 -0.38 16 17 C -0.16 -1.73 5.89 -104.75 -0.62 -2.35 16 18 C 0.19 1.88 6.73 -82.95 -0.56 1.33 16 19 C -0.17 -1.30 9.47 -39.11 -0.37 -1.67 16 20 C -0.07 -0.42 10.16 -39.32 -0.40 -0.82 16 21 C -0.18 -1.09 10.11 -39.38 -0.40 -1.49 16 22 C 0.11 0.79 11.17 -17.58 -0.20 0.60 16 23 N -0.48 -4.87 9.51 -9.78 -0.09 -4.96 16 24 C 0.17 1.87 10.58 -17.20 -0.18 1.69 16 25 N -0.54 -7.52 8.58 -13.04 -0.11 -7.64 16 26 C 0.01 0.26 7.32 -2.63 -0.02 0.24 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.00 0.03 7.70 -51.93 -0.40 -0.37 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.37 7.79 -51.93 -0.40 0.96 16 32 H 0.12 1.99 6.91 -51.93 -0.36 1.63 16 33 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.15 1.42 7.62 -52.49 -0.40 1.02 16 35 H 0.14 0.78 6.21 -52.49 -0.33 0.45 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.16 1.27 6.19 -52.48 -0.32 0.95 16 40 H 0.07 1.61 7.79 -51.93 -0.40 1.20 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -32.94 351.26 -10.20 -43.15 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.12 Total: -0.36 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -4.20 Total: -9.14 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.97 Total: -50.82 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.19 Total: -5.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.94 -10.20 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227293890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.793 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds