Wall clock time and date at job start Fri Apr 10 2020 22:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46558 * 29.99722 * 3 2 1 6 6 H 1.48489 * 109.47282 * 149.99733 * 3 2 1 7 7 C 1.37883 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00163 * 169.99954 * 10 9 7 12 12 C 1.53934 * 86.18058 * 222.41402 * 11 10 9 13 13 O 1.42905 * 113.73169 * 138.07945 * 12 11 10 14 14 C 1.35624 * 117.00090 * 151.90188 * 13 12 11 15 15 C 1.39030 * 119.55316 * 179.97438 * 14 13 12 16 16 C 1.38116 * 119.24496 * 179.97438 * 15 14 13 17 17 C 1.39966 * 118.37414 * 0.02562 * 16 15 14 18 18 C 1.48279 * 120.47923 * 179.97438 * 17 16 15 19 19 C 1.39379 * 119.73445 * 179.72901 * 18 17 16 20 20 C 1.38373 * 119.06586 * 179.75442 * 19 18 17 21 21 C 1.38806 * 118.51767 * 0.50995 * 20 19 18 22 22 C 1.38227 * 119.37427 * 359.72522 * 21 20 19 23 23 N 1.31780 * 120.89569 * 0.02847 * 22 21 20 24 24 C 1.39225 * 119.04437 * 359.97438 * 17 16 15 25 25 N 1.31790 * 120.66302 * 359.74635 * 24 17 16 26 26 C 1.48186 * 111.07427 * 70.56351 * 10 9 7 27 27 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47240 * 59.99989 * 9 7 2 29 29 H 1.08996 * 109.46984 * 299.99722 * 9 7 2 30 30 H 1.09001 * 113.75866 * 108.09297 * 11 10 9 31 31 H 1.09001 * 113.75942 * 336.73414 * 11 10 9 32 32 H 1.08998 * 113.73400 * 269.25164 * 12 11 10 33 33 H 1.08001 * 120.38218 * 359.97438 * 15 14 13 34 34 H 1.07996 * 120.81833 * 179.97438 * 16 15 14 35 35 H 1.08002 * 120.46528 * 359.97438 * 19 18 17 36 36 H 1.07998 * 120.73971 * 180.23901 * 20 19 18 37 37 H 1.08001 * 120.31256 * 179.70886 * 21 20 19 38 38 H 1.08001 * 119.55171 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.66971 * 180.02562 * 24 17 16 40 40 H 1.09000 * 113.75847 * 23.23813 * 26 10 9 41 41 H 1.08998 * 113.82742 * 251.81086 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5160 -4.9029 0.2373 12 6 2.6919 -5.2418 1.1711 13 8 2.2952 -5.8757 2.3888 14 6 3.1945 -6.7068 2.9718 15 6 2.8639 -7.3511 4.1586 16 6 3.7845 -8.1964 4.7466 17 6 5.0232 -8.3710 4.1187 18 6 6.0462 -9.2671 4.7095 19 6 7.2724 -9.4340 4.0683 20 6 8.2189 -10.2696 4.6345 21 6 7.9043 -10.9205 5.8194 22 6 6.6667 -10.7130 6.3990 23 7 5.7848 -9.9079 5.8415 24 6 5.2810 -7.6910 2.9315 25 7 4.3726 -6.8975 2.4005 26 6 2.9005 -3.7223 1.3030 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6240 -2.5576 0.8880 30 1 1.4580 -5.5403 -0.6450 31 1 0.5611 -4.8005 0.7529 32 1 3.5138 -5.7558 0.6727 33 1 1.8983 -7.1925 4.6156 34 1 3.5545 -8.7095 5.6686 35 1 7.4821 -8.9156 3.1443 36 1 9.1793 -10.4155 4.1626 37 1 8.6196 -11.5829 6.2840 38 1 6.4190 -11.2177 7.3212 39 1 6.2333 -7.8186 2.4383 40 1 2.3515 -3.2739 2.1310 41 1 3.9467 -3.4183 1.2706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227293890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:29 Heat of formation + Delta-G solvation = 54.109815 kcal Electronic energy + Delta-G solvation = -23639.944108 eV Core-core repulsion = 20099.597952 eV Total energy + Delta-G solvation = -3540.346156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95779 -41.11212 -40.33113 -38.20613 -35.03684 -34.20554 -33.35307 -33.03770 -31.22389 -29.92280 -27.47862 -26.93281 -25.48920 -25.27549 -23.97607 -23.17407 -22.61739 -20.89803 -19.73048 -18.62683 -18.33654 -18.00994 -17.07474 -16.93612 -16.74804 -16.44165 -16.38730 -15.75987 -15.34194 -15.33286 -15.31047 -14.92511 -14.39149 -14.23445 -13.94279 -13.83096 -13.72327 -13.62414 -13.27756 -13.19084 -12.82423 -12.62698 -12.57570 -12.24467 -11.68073 -11.58636 -11.23877 -11.14568 -10.79360 -10.71681 -10.65083 -10.40962 -10.34307 -9.72517 -9.05183 -8.26378 -6.37377 -0.50638 0.19517 0.36757 0.73182 1.38508 1.40562 1.51686 1.91825 2.37343 2.58290 3.05530 3.07540 3.09012 3.13612 3.23005 3.43791 3.66676 3.85868 3.92200 4.03263 4.08993 4.15725 4.25608 4.29658 4.37638 4.46496 4.53222 4.63143 4.67266 4.68224 4.77925 4.85714 4.88430 4.96175 5.08454 5.11362 5.26610 5.33084 5.42466 5.46837 5.70904 5.79841 6.03346 6.20734 6.30947 6.76383 6.76487 7.02011 7.32261 8.85479 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028150 B = 0.002196 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.440648 B =12747.287173 C =13116.413409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.178 3.822 10 N -0.485 5.485 11 C 0.003 3.997 12 C 0.078 3.922 13 O -0.306 6.306 14 C 0.312 3.688 15 C -0.199 4.199 16 C -0.003 4.003 17 C -0.148 4.148 18 C 0.157 3.843 19 C -0.172 4.172 20 C -0.072 4.072 21 C -0.173 4.173 22 C 0.091 3.909 23 N -0.511 5.511 24 C 0.161 3.839 25 N -0.554 5.554 26 C 0.009 3.991 27 H 0.266 0.734 28 H 0.009 0.991 29 H -0.025 1.025 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.055 0.945 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.826 -25.066 12.554 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.051 3.949 10 N -0.209 5.209 11 C -0.126 4.126 12 C 0.022 3.978 13 O -0.212 6.212 14 C 0.134 3.866 15 C -0.219 4.219 16 C -0.029 4.029 17 C -0.151 4.151 18 C 0.021 3.979 19 C -0.191 4.191 20 C -0.098 4.098 21 C -0.193 4.193 22 C -0.067 4.067 23 N -0.220 5.220 24 C 0.003 3.997 25 N -0.277 5.277 26 C -0.120 4.120 27 H 0.075 0.925 28 H 0.027 0.973 29 H -0.007 1.007 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.195 0.805 39 H 0.207 0.793 40 H 0.073 0.927 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.104 -24.196 11.647 31.312 hybrid contribution -0.108 0.655 0.856 1.083 sum 15.996 -23.541 12.503 31.087 Atomic orbital electron populations 1.70075 1.07716 1.28114 1.51249 1.25960 0.95848 1.03383 0.94498 0.85329 0.78449 0.77923 0.78610 1.19571 1.20486 1.18964 1.21387 0.93542 0.91131 1.50898 0.92125 1.19876 0.90877 0.89843 0.94266 1.68496 1.21025 1.02104 1.29271 1.24292 0.96275 0.93264 0.98739 1.24496 0.99002 0.91482 0.82862 1.86353 1.39585 1.55978 1.39277 1.20299 0.87200 0.88673 0.90431 1.21269 1.03637 1.01418 0.95603 1.21673 0.90555 0.92252 0.98418 1.19495 0.95470 1.02051 0.98100 1.19531 0.92384 0.94426 0.91526 1.22356 0.93592 1.00858 1.02303 1.21973 0.99992 0.93087 0.94715 1.22578 0.98547 1.01270 0.96869 1.23199 0.90023 0.93804 0.99681 1.67542 1.35732 1.08434 1.10325 1.22969 0.97390 0.88311 0.90996 1.67275 1.02772 1.21841 1.35798 1.24186 1.00964 0.94623 0.92263 0.92489 0.97268 1.00699 0.86998 0.91652 0.85146 0.82632 0.82053 0.82688 0.81634 0.81727 0.80491 0.79273 0.92651 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.53 -31.23 8.84 25.60 0.23 -31.00 16 8 H 0.06 3.51 7.80 -2.91 -0.02 3.48 16 9 C 0.18 9.91 4.58 85.56 0.39 10.30 16 10 N -0.48 -22.26 6.25 -915.69 -5.72 -27.98 16 11 C 0.00 0.11 7.81 86.41 0.67 0.79 16 12 C 0.08 2.74 4.33 31.24 0.14 2.87 16 13 O -0.31 -10.33 10.13 -89.37 -0.91 -11.24 16 14 C 0.31 9.17 7.49 84.81 0.64 9.80 16 15 C -0.20 -4.83 10.03 22.43 0.22 -4.61 16 16 C 0.00 -0.07 9.68 22.66 0.22 0.14 16 17 C -0.15 -3.07 5.89 -19.95 -0.12 -3.19 16 18 C 0.16 2.88 6.73 41.96 0.28 3.17 16 19 C -0.17 -2.19 9.47 22.58 0.21 -1.98 16 20 C -0.07 -0.64 10.16 22.44 0.23 -0.41 16 21 C -0.17 -1.46 10.11 22.40 0.23 -1.23 16 22 C 0.09 1.13 11.17 84.70 0.95 2.08 16 23 N -0.51 -9.52 9.51 -184.87 -1.76 -11.28 16 24 C 0.16 3.38 10.58 84.94 0.90 4.28 16 25 N -0.55 -15.21 8.58 -308.04 -2.64 -17.85 16 26 C 0.01 0.36 7.32 86.37 0.63 1.00 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H -0.02 -1.47 7.70 -2.39 -0.02 -1.49 16 30 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.07 2.56 7.79 -2.39 -0.02 2.54 16 32 H 0.13 4.28 6.91 -2.39 -0.02 4.26 16 33 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 34 H 0.16 2.99 7.62 -2.91 -0.02 2.96 16 35 H 0.16 1.29 6.21 -2.91 -0.02 1.27 16 36 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 38 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.19 2.60 6.19 -2.91 -0.02 2.58 16 40 H 0.06 2.50 7.79 -2.39 -0.02 2.48 16 41 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -73.01 351.26 -1.39 -74.40 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.04 Total: 10.98 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 6.28 Total: -7.43 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -9.84 Total: -113.93 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.91 Total: -11.24 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.01 -1.39 -74.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227293890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.511 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds