Wall clock time and date at job start Fri Apr 10 2020 22:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48502 * 109.46735 * 269.99580 * 3 2 1 5 5 H 1.48491 * 109.47117 * 29.99824 * 3 2 1 6 6 H 1.48497 * 109.46892 * 150.00211 * 3 2 1 7 7 C 1.38815 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65147 * 0.04794 * 9 7 2 11 11 C 1.55119 * 104.94389 * 203.96352 * 10 9 7 12 12 C 1.55150 * 101.48632 * 323.22010 * 11 10 9 13 13 H 1.09002 * 110.71776 * 276.82786 * 12 11 10 14 14 O 1.42904 * 110.72315 * 153.73801 * 12 11 10 15 15 C 1.35617 * 117.00185 * 152.43935 * 14 12 11 16 16 C 1.39044 * 119.54975 * 179.97438 * 15 14 12 17 17 C 1.38120 * 119.23681 * 179.97438 * 16 15 14 18 18 C 1.39965 * 118.37804 * 0.02562 * 17 16 15 19 19 C 1.48289 * 120.47280 * 179.97438 * 18 17 16 20 20 C 1.39383 * 119.72921 * 180.02562 * 19 18 17 21 21 C 1.38362 * 119.06570 * 179.97438 * 20 19 18 22 22 C 1.38817 * 118.51851 * 0.02562 * 21 20 19 23 23 C 1.38226 * 119.37105 * 0.27711 * 22 21 20 24 24 N 1.31784 * 120.89483 * 359.41853 * 23 22 21 25 25 C 1.39213 * 119.04920 * 0.25228 * 18 17 16 26 26 N 1.31797 * 120.66063 * 359.47398 * 25 18 17 27 27 C 1.47025 * 125.64855 * 179.97438 * 9 7 2 28 28 H 0.97000 * 119.99863 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.36482 * 322.92382 * 10 9 7 30 30 H 1.09003 * 110.36946 * 85.13615 * 10 9 7 31 31 H 1.09003 * 111.16201 * 205.12414 * 11 10 9 32 32 H 1.09005 * 110.93645 * 81.21360 * 11 10 9 33 33 H 1.07996 * 120.38031 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.80550 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.46542 * 0.02562 * 20 19 18 36 36 H 1.07997 * 120.74332 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.31112 * 179.97438 * 22 21 20 38 38 H 1.07996 * 119.54526 * 179.70421 * 23 22 21 39 39 H 1.08005 * 119.67290 * 179.72421 * 25 18 17 40 40 H 1.08996 * 109.88195 * 59.56296 * 27 9 7 41 41 H 1.08996 * 110.01245 * 298.47189 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1416 -2.5332 0.0013 11 6 -0.4050 -3.9348 0.6114 12 6 0.7783 -4.7524 0.0296 13 1 0.5480 -5.1010 -0.9772 14 8 1.1000 -5.8531 0.8823 15 6 1.6603 -6.9413 0.2982 16 6 1.9951 -8.0424 1.0785 17 6 2.5649 -9.1474 0.4768 18 6 2.7844 -9.1132 -0.9051 19 6 3.3938 -10.2736 -1.5987 20 6 3.6059 -10.2228 -2.9753 21 6 4.1759 -11.3131 -3.6084 22 6 4.5155 -12.4207 -2.8436 23 6 4.2713 -12.4058 -1.4831 24 7 3.7324 -11.3519 -0.9038 25 6 2.4277 -7.9720 -1.6182 26 7 1.8813 -6.9405 -1.0063 27 6 1.9317 -3.7275 0.0017 28 1 -0.4850 0.8401 0.0004 29 1 -0.5995 -1.7585 0.6164 30 1 -0.5273 -2.4854 -1.0171 31 1 -1.3607 -4.3371 0.2752 32 1 -0.3586 -3.9008 1.6999 33 1 1.8110 -8.0340 2.1426 34 1 2.8345 -10.0165 1.0585 35 1 3.3299 -9.3444 -3.5398 36 1 4.3528 -11.3026 -4.6737 37 1 4.9617 -13.2877 -3.3079 38 1 4.5299 -13.2679 -0.8862 39 1 2.5967 -7.9331 -2.6843 40 1 2.5583 -3.8507 0.8850 41 1 2.5296 -3.8665 -0.8990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227294669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:33 Heat of formation + Delta-G solvation = 70.096385 kcal Electronic energy + Delta-G solvation = -24086.242510 eV Core-core repulsion = 20546.589584 eV Total energy + Delta-G solvation = -3539.652926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91339 -40.05022 -38.26983 -36.18569 -33.39298 -32.73161 -32.37659 -31.95698 -29.53007 -28.93909 -27.24952 -24.85606 -24.62330 -24.04964 -22.84873 -21.93291 -20.23958 -20.19028 -18.34569 -17.60002 -17.19588 -16.73359 -16.35676 -15.76557 -15.45625 -14.83309 -14.69326 -14.57560 -14.38956 -14.04486 -13.96074 -13.59479 -13.21781 -12.95151 -12.57863 -12.41722 -12.41206 -12.03004 -11.77272 -11.48192 -10.99357 -10.79620 -10.57174 -10.45977 -10.19928 -10.11506 -10.00074 -9.85071 -9.79224 -9.60227 -9.51303 -9.43890 -8.65898 -8.10798 -6.85070 -5.66073 -3.07832 0.30320 0.93537 1.17602 1.56215 3.22501 3.41138 3.42564 3.45859 3.48207 3.84126 3.90742 4.17347 4.37399 4.50171 4.51435 4.69961 4.76089 4.83496 5.07744 5.10276 5.17900 5.34697 5.38338 5.42317 5.49613 5.60701 5.67821 5.76996 5.81559 5.85350 5.88584 6.12151 6.22119 6.34634 6.37693 6.48438 6.53024 6.70041 6.74826 7.46384 7.52823 7.61837 7.64886 7.82453 7.85900 8.33828 9.20948 9.81238 10.45247 11.38421 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.002440 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.265066 B =11472.454810 C =11975.033190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.140 4.140 12 C 0.075 3.925 13 H 0.094 0.906 14 O -0.291 6.291 15 C 0.346 3.654 16 C -0.202 4.202 17 C -0.001 4.001 18 C -0.161 4.161 19 C 0.191 3.809 20 C -0.170 4.170 21 C -0.068 4.068 22 C -0.185 4.185 23 C 0.107 3.893 24 N -0.485 5.485 25 C 0.170 3.830 26 N -0.536 5.536 27 C 0.126 3.874 28 H 0.253 0.747 29 H 0.113 0.887 30 H 0.016 0.984 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.030 0.970 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -25.208 -4.407 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.029 3.971 11 C -0.179 4.179 12 C 0.019 3.981 13 H 0.112 0.888 14 O -0.196 6.196 15 C 0.167 3.833 16 C -0.223 4.223 17 C -0.026 4.026 18 C -0.165 4.165 19 C 0.054 3.946 20 C -0.189 4.189 21 C -0.094 4.094 22 C -0.205 4.205 23 C -0.051 4.051 24 N -0.194 5.194 25 C 0.011 3.989 26 N -0.259 5.259 27 C -0.001 4.001 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.047 0.953 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.988 -24.162 -3.672 24.943 hybrid contribution 0.954 0.064 -0.806 1.251 sum 5.942 -24.098 -4.478 25.221 Atomic orbital electron populations 1.69761 1.04902 1.24877 1.57716 1.24799 0.95773 0.97748 1.02394 0.86030 0.78517 0.83143 0.77572 1.21594 1.21599 1.20675 1.19086 0.90560 0.82240 1.43010 0.90404 1.44373 1.01904 0.99506 1.87070 1.22010 0.84845 0.91663 0.98538 1.23295 0.95042 0.98052 1.01471 1.23670 0.97021 0.83275 0.94119 0.88806 1.86335 1.72888 1.23046 1.37375 1.20142 0.87991 0.87242 0.87883 1.21101 1.06620 0.92782 1.01766 1.21470 0.90864 0.96952 0.93329 1.19232 1.07913 0.94810 0.94558 1.19535 0.93693 0.91381 0.89947 1.22102 1.01554 1.00218 0.95075 1.21541 0.94761 0.92568 1.00550 1.22165 1.02847 0.99788 0.95666 1.22712 0.93963 0.95779 0.92638 1.67619 1.11572 1.00072 1.40152 1.22527 0.90327 0.86377 0.99675 1.67411 1.18731 1.29705 1.10009 1.21559 0.93763 0.86098 0.98657 0.93637 0.86909 0.96552 0.91571 0.90966 0.83732 0.83319 0.84369 0.84615 0.84813 0.82619 0.82296 0.95259 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.09 55.49 0.56 -26.54 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.31 10.27 -15.06 -0.15 -6.47 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -16.03 3.40 -169.94 -0.58 -16.61 16 10 C 0.15 3.83 5.89 -2.42 -0.01 3.81 16 11 C -0.14 -2.80 6.83 -24.47 -0.17 -2.97 16 12 C 0.08 1.48 3.18 -24.90 -0.08 1.40 16 13 H 0.09 1.81 7.03 -51.93 -0.37 1.45 16 14 O -0.29 -5.27 9.84 -18.55 -0.18 -5.45 16 15 C 0.35 5.52 7.49 -17.05 -0.13 5.39 16 16 C -0.20 -2.63 10.03 -39.33 -0.39 -3.02 16 17 C 0.00 -0.01 9.68 -38.98 -0.38 -0.39 16 18 C -0.16 -1.91 5.89 -104.75 -0.62 -2.52 16 19 C 0.19 2.05 6.73 -82.95 -0.56 1.49 16 20 C -0.17 -1.44 9.47 -39.11 -0.37 -1.81 16 21 C -0.07 -0.47 10.16 -39.32 -0.40 -0.87 16 22 C -0.18 -1.21 10.11 -39.37 -0.40 -1.60 16 23 C 0.11 0.85 11.17 -17.58 -0.20 0.65 16 24 N -0.48 -5.17 9.51 -9.78 -0.09 -5.26 16 25 C 0.17 2.10 10.58 -17.20 -0.18 1.92 16 26 N -0.54 -8.34 8.64 -13.04 -0.11 -8.45 16 27 C 0.13 2.86 7.02 -3.06 -0.02 2.84 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.11 3.10 5.87 -51.93 -0.31 2.79 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.15 1.51 7.63 -52.49 -0.40 1.11 16 35 H 0.14 0.92 6.21 -52.49 -0.33 0.59 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.16 1.48 6.19 -52.48 -0.32 1.16 16 40 H 0.03 0.68 8.06 -51.93 -0.42 0.27 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -32.76 344.27 -9.46 -42.22 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.07 Total: 0.21 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.15 Total: -2.60 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.22 Total: -56.87 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.18 Total: -5.45 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.76 -9.46 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227294669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.316 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds