Wall clock time and date at job start Fri Apr 10 2020 22:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48502 * 109.46735 * 269.99580 * 3 2 1 5 5 H 1.48491 * 109.47117 * 29.99824 * 3 2 1 6 6 H 1.48497 * 109.46892 * 150.00211 * 3 2 1 7 7 C 1.38815 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65147 * 0.04794 * 9 7 2 11 11 C 1.55119 * 104.94389 * 203.96352 * 10 9 7 12 12 C 1.55150 * 101.48632 * 323.22010 * 11 10 9 13 13 H 1.09002 * 110.71776 * 276.82786 * 12 11 10 14 14 O 1.42904 * 110.72315 * 153.73801 * 12 11 10 15 15 C 1.35617 * 117.00185 * 152.43935 * 14 12 11 16 16 C 1.39044 * 119.54975 * 179.97438 * 15 14 12 17 17 C 1.38120 * 119.23681 * 179.97438 * 16 15 14 18 18 C 1.39965 * 118.37804 * 0.02562 * 17 16 15 19 19 C 1.48289 * 120.47280 * 179.97438 * 18 17 16 20 20 C 1.39383 * 119.72921 * 180.02562 * 19 18 17 21 21 C 1.38362 * 119.06570 * 179.97438 * 20 19 18 22 22 C 1.38817 * 118.51851 * 0.02562 * 21 20 19 23 23 C 1.38226 * 119.37105 * 0.27711 * 22 21 20 24 24 N 1.31784 * 120.89483 * 359.41853 * 23 22 21 25 25 C 1.39213 * 119.04920 * 0.25228 * 18 17 16 26 26 N 1.31797 * 120.66063 * 359.47398 * 25 18 17 27 27 C 1.47025 * 125.64855 * 179.97438 * 9 7 2 28 28 H 0.97000 * 119.99863 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.36482 * 322.92382 * 10 9 7 30 30 H 1.09003 * 110.36946 * 85.13615 * 10 9 7 31 31 H 1.09003 * 111.16201 * 205.12414 * 11 10 9 32 32 H 1.09005 * 110.93645 * 81.21360 * 11 10 9 33 33 H 1.07996 * 120.38031 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.80550 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.46542 * 0.02562 * 20 19 18 36 36 H 1.07997 * 120.74332 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.31112 * 179.97438 * 22 21 20 38 38 H 1.07996 * 119.54526 * 179.70421 * 23 22 21 39 39 H 1.08005 * 119.67290 * 179.72421 * 25 18 17 40 40 H 1.08996 * 109.88195 * 59.56296 * 27 9 7 41 41 H 1.08996 * 110.01245 * 298.47189 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1416 -2.5332 0.0013 11 6 -0.4050 -3.9348 0.6114 12 6 0.7783 -4.7524 0.0296 13 1 0.5480 -5.1010 -0.9772 14 8 1.1000 -5.8531 0.8823 15 6 1.6603 -6.9413 0.2982 16 6 1.9951 -8.0424 1.0785 17 6 2.5649 -9.1474 0.4768 18 6 2.7844 -9.1132 -0.9051 19 6 3.3938 -10.2736 -1.5987 20 6 3.6059 -10.2228 -2.9753 21 6 4.1759 -11.3131 -3.6084 22 6 4.5155 -12.4207 -2.8436 23 6 4.2713 -12.4058 -1.4831 24 7 3.7324 -11.3519 -0.9038 25 6 2.4277 -7.9720 -1.6182 26 7 1.8813 -6.9405 -1.0063 27 6 1.9317 -3.7275 0.0017 28 1 -0.4850 0.8401 0.0004 29 1 -0.5995 -1.7585 0.6164 30 1 -0.5273 -2.4854 -1.0171 31 1 -1.3607 -4.3371 0.2752 32 1 -0.3586 -3.9008 1.6999 33 1 1.8110 -8.0340 2.1426 34 1 2.8345 -10.0165 1.0585 35 1 3.3299 -9.3444 -3.5398 36 1 4.3528 -11.3026 -4.6737 37 1 4.9617 -13.2877 -3.3079 38 1 4.5299 -13.2679 -0.8862 39 1 2.5967 -7.9331 -2.6843 40 1 2.5583 -3.8507 0.8850 41 1 2.5296 -3.8665 -0.8990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227294669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:33 Heat of formation + Delta-G solvation = 49.510475 kcal Electronic energy + Delta-G solvation = -24087.135182 eV Core-core repulsion = 20546.589584 eV Total energy + Delta-G solvation = -3540.545598 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88187 -40.89597 -39.62490 -37.83850 -34.43539 -34.15005 -33.32458 -32.99964 -31.26257 -30.04158 -28.98543 -26.64522 -25.45991 -25.13431 -23.70855 -22.81535 -22.16115 -21.70741 -19.57304 -19.05284 -18.33419 -17.90400 -17.09824 -16.93679 -16.69707 -16.49483 -15.92556 -15.69488 -15.37475 -15.32815 -15.04268 -14.65012 -14.40761 -14.26342 -13.87111 -13.85019 -13.67690 -13.35081 -13.16125 -12.94669 -12.70490 -12.62754 -12.27622 -12.04080 -11.89816 -11.76994 -11.45153 -11.15729 -10.79801 -10.78897 -10.64659 -10.41261 -10.34280 -9.05860 -8.96105 -7.81582 -5.27461 -0.50383 0.20611 0.36315 0.73648 1.46136 1.48673 1.57538 1.94219 2.47993 2.59835 3.08413 3.09491 3.21632 3.29236 3.63332 3.68930 3.73421 3.86978 3.92267 4.02792 4.10023 4.16158 4.17708 4.25669 4.34068 4.50637 4.56299 4.67347 4.70411 4.77437 4.87269 4.90976 4.94046 5.02179 5.11174 5.26872 5.32557 5.40462 5.44976 5.54167 5.72440 5.79535 6.21852 6.27076 6.78983 7.01478 7.05627 7.70143 8.34008 9.20921 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.002440 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.265066 B =11472.454810 C =11975.033190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.986 3.014 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.623 5.623 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.096 3.904 13 H 0.097 0.903 14 O -0.301 6.301 15 C 0.311 3.689 16 C -0.196 4.196 17 C -0.003 4.003 18 C -0.148 4.148 19 C 0.158 3.842 20 C -0.174 4.174 21 C -0.072 4.072 22 C -0.173 4.173 23 C 0.092 3.908 24 N -0.509 5.509 25 C 0.158 3.842 26 N -0.558 5.558 27 C 0.127 3.873 28 H 0.251 0.749 29 H 0.085 0.915 30 H -0.002 1.002 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.021 0.979 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -27.646 -5.430 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.813 3.187 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.032 3.968 11 C -0.163 4.163 12 C 0.039 3.961 13 H 0.115 0.885 14 O -0.207 6.207 15 C 0.133 3.867 16 C -0.216 4.216 17 C -0.028 4.028 18 C -0.151 4.151 19 C 0.023 3.977 20 C -0.193 4.193 21 C -0.098 4.098 22 C -0.192 4.192 23 C -0.066 4.066 24 N -0.219 5.219 25 C 0.001 3.999 26 N -0.281 5.281 27 C 0.001 3.999 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.016 0.984 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.197 0.803 39 H 0.203 0.797 40 H 0.039 0.961 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.276 -26.643 -4.703 27.773 hybrid contribution 0.689 0.551 -0.592 1.063 sum 6.965 -26.092 -5.295 27.520 Atomic orbital electron populations 1.69999 1.06175 1.25401 1.58099 1.25682 0.96773 1.01027 1.02163 0.84975 0.77525 0.78601 0.77571 1.21106 1.21495 1.19600 1.19429 0.90976 0.83540 1.43424 0.90400 1.44664 1.02852 1.00408 1.87067 1.21802 0.83961 0.93812 0.97233 1.23103 0.96777 0.95279 1.01172 1.23210 0.95042 0.83259 0.94553 0.88524 1.86282 1.74093 1.23243 1.37127 1.20373 0.90236 0.87430 0.88692 1.21276 1.05853 0.92078 1.02394 1.21685 0.90502 0.96958 0.93673 1.19482 1.05987 0.95004 0.94650 1.19510 0.95840 0.91449 0.90950 1.22344 1.01202 1.01429 0.94351 1.21963 0.93779 0.91934 1.02097 1.22583 1.01003 1.00541 0.95096 1.23222 0.93730 0.95767 0.93899 1.67542 1.12351 1.00764 1.41196 1.22928 0.90222 0.85946 1.00852 1.67329 1.19458 1.31196 1.10151 1.21609 0.94878 0.85600 0.97848 0.93955 0.89757 0.98364 0.88551 0.90914 0.82216 0.81768 0.83023 0.81715 0.81634 0.80308 0.79746 0.96058 0.95738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.02 10.09 21.65 0.22 -56.80 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.99 46.41 29.55 68.60 2.03 48.44 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.36 10.27 84.03 0.86 -13.50 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -34.21 3.40 -691.56 -2.35 -36.56 16 10 C 0.16 8.03 5.89 86.93 0.51 8.54 16 11 C -0.12 -5.03 6.83 32.06 0.22 -4.81 16 12 C 0.10 3.82 3.18 31.78 0.10 3.92 16 13 H 0.10 3.76 7.03 -2.39 -0.02 3.75 16 14 O -0.30 -10.95 9.84 -89.28 -0.88 -11.82 16 15 C 0.31 9.91 7.49 84.81 0.64 10.54 16 16 C -0.20 -5.00 10.03 22.44 0.22 -4.77 16 17 C 0.00 -0.06 9.68 22.66 0.22 0.16 16 18 C -0.15 -3.35 5.89 -19.95 -0.12 -3.47 16 19 C 0.16 3.15 6.73 41.97 0.28 3.44 16 20 C -0.17 -2.55 9.47 22.58 0.21 -2.34 16 21 C -0.07 -0.74 10.16 22.44 0.23 -0.51 16 22 C -0.17 -1.62 10.11 22.41 0.23 -1.40 16 23 C 0.09 1.21 11.17 84.70 0.95 2.16 16 24 N -0.51 -9.97 9.51 -184.86 -1.76 -11.73 16 25 C 0.16 3.80 10.58 84.93 0.90 4.70 16 26 N -0.56 -17.37 8.64 -308.04 -2.66 -20.03 16 27 C 0.13 5.92 7.02 86.73 0.61 6.53 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.08 4.82 5.87 -2.38 -0.01 4.80 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 33 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.16 3.14 7.63 -2.91 -0.02 3.11 16 35 H 0.15 1.66 6.21 -2.91 -0.02 1.64 16 36 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.17 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.19 3.21 6.19 -2.91 -0.02 3.19 16 40 H 0.02 1.03 8.06 -2.39 -0.02 1.01 16 41 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -72.72 344.27 2.18 -70.55 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.05 Total: 11.99 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.53 Total: 5.96 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.55 Total: -125.11 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.88 Total: -11.82 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -72.72 2.18 -70.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227294669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.056 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds