Wall clock time and date at job start Fri Apr 10 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47191 * 5.29856 * 3 2 1 5 5 H 1.48499 * 109.47350 * 245.29214 * 3 2 1 6 6 H 1.48503 * 109.46994 * 125.29395 * 3 2 1 7 7 C 1.38810 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99904 * 345.60916 * 7 2 1 9 9 N 1.36931 * 120.00124 * 165.60610 * 7 2 1 10 10 C 1.47025 * 125.64960 * 348.98007 * 9 7 2 11 11 C 1.54317 * 107.27277 * 181.02200 * 10 9 7 12 12 C 1.55164 * 102.94423 * 22.18671 * 11 10 9 13 13 H 1.09000 * 110.99823 * 82.57815 * 12 11 10 14 14 O 1.42895 * 111.00366 * 206.38652 * 12 11 10 15 15 C 1.35626 * 117.00231 * 209.99969 * 14 12 11 16 16 C 1.39037 * 119.55634 * 180.02562 * 15 14 12 17 17 C 1.38115 * 119.24268 * 179.97438 * 16 15 14 18 18 C 1.39963 * 118.37313 * 359.97438 * 17 16 15 19 19 C 1.48294 * 120.47564 * 180.02562 * 18 17 16 20 20 C 1.39370 * 119.73479 * 180.02562 * 19 18 17 21 21 C 1.38372 * 119.07021 * 179.97438 * 20 19 18 22 22 C 1.38805 * 118.51338 * 359.97438 * 21 20 19 23 23 C 1.38221 * 119.37607 * 0.02562 * 22 21 20 24 24 N 1.31783 * 120.89414 * 359.74241 * 23 22 21 25 25 C 1.39220 * 119.05233 * 359.97438 * 18 17 16 26 26 N 1.31789 * 120.65743 * 359.74891 * 25 18 17 27 27 C 1.47424 * 125.65002 * 168.66454 * 9 7 2 28 28 H 0.97001 * 119.99278 * 174.92732 * 1 2 3 29 29 H 1.08997 * 109.87719 * 300.43423 * 10 9 7 30 30 H 1.08998 * 109.88510 * 61.59599 * 10 9 7 31 31 H 1.08999 * 110.72759 * 140.55366 * 11 10 9 32 32 H 1.09005 * 110.71764 * 263.82766 * 11 10 9 33 33 H 1.08000 * 120.37759 * 359.95812 * 16 15 14 34 34 H 1.07994 * 120.81621 * 179.97438 * 17 16 15 35 35 H 1.08004 * 120.46560 * 359.94745 * 20 19 18 36 36 H 1.07994 * 120.74412 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.31354 * 180.02562 * 22 21 20 38 38 H 1.08005 * 119.55095 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.66914 * 179.97438 * 25 18 17 40 40 H 1.09001 * 110.36978 * 274.75543 * 27 9 7 41 41 H 1.09003 * 110.36379 * 37.07331 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2903 2.7435 0.1293 5 1 3.0045 1.7540 -1.2719 6 1 3.1982 1.6420 1.1428 7 6 2.0103 -1.2021 0.0005 8 1 1.4958 -2.1226 0.2334 9 7 3.3474 -1.2208 -0.2942 10 6 4.1190 -0.0976 -0.8462 11 6 5.5699 -0.5878 -1.0362 12 6 5.4088 -2.1293 -1.1113 13 1 5.1277 -2.4441 -2.1163 14 8 6.6021 -2.7902 -0.6856 15 6 6.8705 -3.9967 -1.2440 16 6 8.0175 -4.6866 -0.8678 17 6 8.2842 -5.9149 -1.4403 18 6 7.3812 -6.4195 -2.3832 19 6 7.6216 -7.7338 -3.0264 20 6 6.7126 -8.2212 -3.9638 21 6 6.9507 -9.4490 -4.5559 22 6 8.0918 -10.1503 -4.1915 23 6 8.9510 -9.6074 -3.2547 24 7 8.7031 -8.4337 -2.7091 25 6 6.2536 -5.6703 -2.7078 26 7 6.0334 -4.5045 -2.1340 27 6 4.2531 -2.3685 -0.1046 28 1 -0.4849 -0.8368 -0.0743 29 1 3.7006 0.2030 -1.8067 30 1 4.0994 0.7424 -0.1518 31 1 5.9904 -0.1984 -1.9633 32 1 6.1870 -0.3057 -0.1831 33 1 8.6922 -4.2668 -0.1365 34 1 9.1678 -6.4725 -1.1670 35 1 5.8344 -7.6489 -4.2240 36 1 6.2645 -9.8522 -5.2858 37 1 8.3063 -11.1111 -4.6357 38 1 9.8399 -10.1504 -2.9694 39 1 5.5506 -6.0499 -3.4343 40 1 4.6339 -2.3866 0.9165 41 1 3.7373 -3.3008 -0.3346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227294670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:37 Heat of formation + Delta-G solvation = 79.094050 kcal Electronic energy + Delta-G solvation = -24188.731388 eV Core-core repulsion = 20649.468630 eV Total energy + Delta-G solvation = -3539.262758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99322 -40.13139 -38.49575 -36.59921 -33.46168 -32.79427 -32.49654 -32.11554 -29.83882 -29.11367 -28.08012 -24.79785 -24.63673 -23.75884 -22.90288 -21.98314 -20.93395 -20.29532 -18.56737 -17.68525 -17.58744 -17.00781 -16.41020 -15.89369 -15.63038 -15.07533 -15.03032 -14.67164 -14.44128 -14.36505 -13.69124 -13.67910 -13.50330 -13.17685 -12.97267 -12.59860 -12.45326 -12.23725 -12.12282 -12.02599 -11.42620 -11.08150 -10.63583 -10.59596 -10.24915 -10.11492 -10.05543 -9.84839 -9.63069 -9.54362 -9.32294 -8.98856 -8.71412 -8.19607 -7.04921 -6.30782 -3.22849 0.24288 0.89764 1.09322 1.49214 3.04047 3.36620 3.42128 3.50888 3.72704 3.78487 3.83615 4.09252 4.31862 4.48159 4.62930 4.64215 4.72093 4.77585 4.90474 5.01522 5.05501 5.09267 5.14482 5.29811 5.31212 5.44526 5.52149 5.54692 5.63651 5.74830 5.82184 5.85164 5.96601 6.06844 6.13832 6.23552 6.31450 6.36100 6.51620 6.60592 6.72434 7.35483 7.60360 7.64940 7.76242 8.33509 9.04185 9.54412 10.20972 11.20063 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.002595 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.092320 B =10785.616031 C =11445.749481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.301 1.301 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.320 4.320 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.113 3.887 11 C -0.126 4.126 12 C 0.071 3.929 13 H 0.104 0.896 14 O -0.291 6.291 15 C 0.344 3.656 16 C -0.200 4.200 17 C -0.001 4.001 18 C -0.158 4.158 19 C 0.189 3.811 20 C -0.169 4.169 21 C -0.068 4.068 22 C -0.183 4.183 23 C 0.107 3.893 24 N -0.485 5.485 25 C 0.170 3.830 26 N -0.535 5.535 27 C 0.127 3.873 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.031 0.969 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.127 -18.237 -9.132 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.221 4.221 3 Si 0.904 3.096 4 H -0.229 1.229 5 H -0.213 1.213 6 H -0.226 1.226 7 C -0.447 4.447 8 H 0.097 0.903 9 N -0.338 5.338 10 C -0.012 4.012 11 C -0.164 4.164 12 C 0.014 3.986 13 H 0.122 0.878 14 O -0.197 6.197 15 C 0.165 3.835 16 C -0.221 4.221 17 C -0.026 4.026 18 C -0.161 4.161 19 C 0.052 3.948 20 C -0.189 4.189 21 C -0.094 4.094 22 C -0.203 4.203 23 C -0.051 4.051 24 N -0.194 5.194 25 C 0.011 3.989 26 N -0.257 5.257 27 C 0.000 4.000 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.049 0.951 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.808 -15.595 -8.429 26.582 hybrid contribution 0.184 -2.655 -0.528 2.713 sum 19.992 -18.250 -8.957 28.513 Atomic orbital electron populations 1.70897 1.05642 1.29247 1.51136 1.25872 0.96501 1.00913 0.98809 0.83846 0.73200 0.76196 0.76345 1.22889 1.21283 1.22596 1.20180 0.81366 0.96190 1.47008 0.90321 1.44680 1.05766 1.08421 1.74922 1.22006 0.89377 0.92133 0.97678 1.22743 0.98246 0.92868 1.02514 1.23863 0.82532 0.91750 1.00480 0.87847 1.86257 1.43837 1.27758 1.61812 1.20084 0.89450 0.85963 0.87960 1.21081 0.98662 0.96461 1.05866 1.21480 0.97554 0.92710 0.90886 1.19252 0.98908 0.95136 1.02846 1.19518 0.90096 0.92598 0.92545 1.22108 1.01048 0.97391 0.98315 1.21549 0.96506 0.93739 0.97610 1.22172 0.96226 1.01760 1.00170 1.22715 0.98621 0.91182 0.92589 1.67613 1.18905 1.07262 1.25592 1.22539 0.93646 0.87934 0.94764 1.67388 1.31494 1.14832 1.12030 1.21852 0.89963 0.92495 0.95668 0.92843 0.93112 0.94854 0.90566 0.90332 0.83690 0.83226 0.84352 0.84562 0.84765 0.82576 0.82196 0.95147 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 3 Si 1.07 27.17 24.53 -169.99 -4.17 23.00 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.29 -6.56 5.43 56.52 0.31 -6.26 16 6 H -0.30 -7.30 6.84 56.52 0.39 -6.92 16 7 C -0.32 -9.43 10.56 -15.06 -0.16 -9.59 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 9 N -0.61 -15.52 3.32 -169.94 -0.56 -16.08 16 10 C 0.11 2.51 4.61 -3.07 -0.01 2.50 16 11 C -0.13 -2.22 6.68 -24.90 -0.17 -2.39 16 12 C 0.07 1.29 3.36 -24.46 -0.08 1.21 16 13 H 0.10 1.91 6.94 -51.93 -0.36 1.55 16 14 O -0.29 -4.83 9.92 -18.58 -0.18 -5.01 16 15 C 0.34 5.15 7.49 -17.05 -0.13 5.02 16 16 C -0.20 -2.42 10.03 -39.33 -0.39 -2.81 16 17 C 0.00 -0.01 9.68 -38.98 -0.38 -0.39 16 18 C -0.16 -1.79 5.89 -104.75 -0.62 -2.41 16 19 C 0.19 1.96 6.73 -82.95 -0.56 1.40 16 20 C -0.17 -1.40 9.47 -39.11 -0.37 -1.77 16 21 C -0.07 -0.46 10.16 -39.32 -0.40 -0.86 16 22 C -0.18 -1.16 10.11 -39.38 -0.40 -1.56 16 23 C 0.11 0.82 11.17 -17.58 -0.20 0.62 16 24 N -0.48 -4.99 9.51 -9.78 -0.09 -5.09 16 25 C 0.17 2.03 10.58 -17.21 -0.18 1.85 16 26 N -0.53 -8.01 8.60 -13.04 -0.11 -8.12 16 27 C 0.13 2.75 6.98 -2.41 -0.02 2.74 16 28 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 29 H 0.05 1.16 6.79 -51.93 -0.35 0.81 16 30 H 0.03 0.78 3.82 -51.93 -0.20 0.58 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.15 1.42 7.62 -52.49 -0.40 1.02 16 35 H 0.14 0.90 6.21 -52.48 -0.33 0.57 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 38 H 0.16 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.16 1.46 6.19 -52.49 -0.32 1.14 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -34.59 337.13 -8.47 -43.06 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.03 Total: -0.84 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -4.16 Total: -7.19 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.01 Total: -58.11 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.18 Total: -5.01 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.17 Total: 23.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.59 -8.47 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227294670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.156 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds