Wall clock time and date at job start Fri Apr 10 2020 22:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48503 * 109.46865 * 269.99480 * 3 2 1 5 5 H 1.48495 * 109.47017 * 29.99175 * 3 2 1 6 6 H 1.48491 * 109.47409 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99796 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99617 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46584 * 180.02562 * 9 7 2 11 11 C 1.46908 * 110.99675 * 193.95345 * 10 9 7 12 12 C 1.52999 * 109.47184 * 66.04815 * 11 10 9 13 13 C 1.52992 * 109.47124 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47124 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47131 * 179.97438 * 14 13 12 16 16 O 1.42897 * 109.47058 * 179.97438 * 15 14 13 17 17 C 1.46903 * 111.00277 * 70.00243 * 10 9 7 18 18 C 1.50699 * 109.46834 * 293.95077 * 17 10 9 19 19 C 1.38238 * 119.98782 * 270.25397 * 18 17 10 20 20 C 1.38212 * 120.01544 * 180.21353 * 19 18 17 21 21 C 1.38361 * 119.98341 * 359.50741 * 20 19 18 22 22 Cl 1.73597 * 120.00859 * 180.27890 * 21 20 19 23 23 C 1.38346 * 119.97306 * 0.25744 * 21 20 19 24 24 C 1.38210 * 119.98768 * 0.02562 * 23 21 20 25 25 H 0.96998 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47048 * 60.00205 * 9 7 2 27 27 H 1.08996 * 109.47043 * 299.99863 * 9 7 2 28 28 H 1.08997 * 109.46729 * 186.04709 * 11 10 9 29 29 H 1.08999 * 109.46785 * 306.04362 * 11 10 9 30 30 H 1.09003 * 109.46908 * 299.99935 * 12 11 10 31 31 H 1.08996 * 109.46983 * 59.99726 * 12 11 10 32 32 H 1.09003 * 109.47094 * 299.99723 * 13 12 11 33 33 H 1.09009 * 109.47430 * 59.99634 * 13 12 11 34 34 H 1.08997 * 109.47201 * 299.99506 * 14 13 12 35 35 H 1.08999 * 109.47630 * 59.99966 * 14 13 12 36 36 H 1.08997 * 109.47501 * 300.00108 * 15 14 13 37 37 H 1.09005 * 109.47397 * 60.00211 * 15 14 13 38 38 H 0.96709 * 114.00328 * 180.02562 * 16 15 14 39 39 H 1.08992 * 109.47144 * 173.95175 * 17 10 9 40 40 H 1.08996 * 109.46948 * 53.94679 * 17 10 9 41 41 H 1.08004 * 119.99455 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.01126 * 179.79322 * 20 19 18 43 43 H 1.08002 * 120.00348 * 180.02562 * 23 21 20 44 44 H 1.08002 * 119.99295 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4314 -2.6319 0.3323 12 6 5.6375 -2.1731 1.7772 13 6 7.1271 -2.2274 2.1220 14 6 7.3331 -1.7693 3.5672 15 6 8.8227 -1.8242 3.9122 16 8 9.0152 -1.3957 5.2617 17 6 3.7349 -3.2315 -1.2880 18 6 2.2472 -3.3772 -1.4794 19 6 1.6004 -4.5124 -1.0280 20 6 0.2367 -4.6486 -1.2072 21 6 -0.4826 -3.6438 -1.8295 22 17 -2.1966 -3.8109 -2.0485 23 6 0.1645 -2.5058 -2.2768 24 6 1.5291 -2.3734 -2.1022 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6805 -0.8888 28 1 5.7927 -3.6541 0.2206 29 1 5.9844 -1.9756 -0.3398 30 1 5.2762 -1.1508 1.8889 31 1 5.0845 -2.8293 2.4491 32 1 7.4888 -3.2496 2.0102 33 1 7.6799 -1.5709 1.4499 34 1 6.9714 -0.7472 3.6794 35 1 6.7805 -2.4261 4.2389 36 1 9.1842 -2.8464 3.8000 37 1 9.3758 -1.1675 3.2405 38 1 9.9385 -1.4047 5.5494 39 1 4.2009 -4.2168 -1.2996 40 1 4.1473 -2.6250 -2.0942 41 1 2.1614 -5.2949 -0.5385 42 1 -0.2680 -5.5370 -0.8574 43 1 -0.3966 -1.7210 -2.7622 44 1 2.0345 -1.4852 -2.4517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235963870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:40 Heat of formation + Delta-G solvation = -33.130654 kcal Electronic energy + Delta-G solvation = -23658.621591 eV Core-core repulsion = 20215.599898 eV Total energy + Delta-G solvation = -3443.021693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.00287 -37.55291 -36.86022 -35.68159 -34.47304 -32.60320 -31.13303 -30.10270 -29.35023 -27.95657 -25.46911 -23.54327 -22.15505 -21.89008 -21.17666 -20.37106 -19.68610 -17.48538 -16.99993 -16.22199 -16.03846 -15.15503 -14.87230 -14.68599 -14.47096 -14.17729 -14.04998 -13.43542 -13.17763 -12.79595 -12.63674 -12.56285 -12.41887 -12.28817 -12.10021 -11.71641 -11.45437 -11.19815 -10.99961 -10.96872 -10.79658 -10.71627 -10.57039 -10.42829 -10.23381 -10.14513 -10.03615 -9.93600 -9.80858 -9.21224 -8.67438 -7.88167 -7.48038 -7.40740 -6.06587 -3.96295 2.09435 2.34916 2.94236 3.21980 3.31618 3.33768 3.99493 4.36632 4.44435 4.84338 4.89267 5.05566 5.16264 5.22098 5.25822 5.34787 5.50363 5.60573 5.63988 5.71278 5.79767 5.83092 5.87689 5.98707 6.03054 6.05522 6.09328 6.20767 6.31012 6.46541 6.49414 6.63548 6.65826 6.77702 6.83090 6.89041 7.13608 7.26824 7.41205 7.50210 7.58738 7.77817 7.85169 7.97021 8.60860 9.05921 9.50642 11.00886 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.003503 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.173576 B = 7991.836231 C = 9162.717700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.860 3.140 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.502 4.502 8 H 0.105 0.895 9 C 0.154 3.846 10 N -0.524 5.524 11 C 0.057 3.943 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.121 4.121 15 C 0.075 3.925 16 O -0.576 6.576 17 C 0.108 3.892 18 C -0.069 4.069 19 C -0.099 4.099 20 C -0.146 4.146 21 C -0.018 4.018 22 Cl -0.103 7.103 23 C -0.111 4.111 24 C -0.005 4.005 25 H 0.263 0.737 26 H 0.032 0.968 27 H -0.018 1.018 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.376 0.624 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.945 -6.504 -0.668 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.688 3.312 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.539 4.539 8 H 0.123 0.877 9 C 0.028 3.972 10 N -0.248 5.248 11 C -0.072 4.072 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.002 4.002 16 O -0.382 6.382 17 C -0.020 4.020 18 C -0.070 4.070 19 C -0.118 4.118 20 C -0.165 4.165 21 C -0.044 4.044 22 Cl -0.074 7.074 23 C -0.130 4.130 24 C -0.024 4.024 25 H 0.073 0.927 26 H 0.050 0.950 27 H -0.001 1.001 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.223 0.777 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.722 -6.567 -0.342 12.578 hybrid contribution 1.233 1.652 -0.364 2.093 sum 11.954 -4.915 -0.706 12.945 Atomic orbital electron populations 1.69902 1.05770 1.26604 1.48811 1.24875 0.94633 0.98128 0.95486 0.87088 0.80667 0.85039 0.78407 1.20523 1.21252 1.19351 1.21613 0.88819 0.95602 1.47843 0.87692 1.20351 0.97417 0.84191 0.95233 1.62048 1.13200 1.20112 1.29455 1.22038 0.89804 0.99644 0.95680 1.21584 0.94308 1.02757 0.96704 1.21466 0.97602 1.01080 0.94989 1.21539 0.94349 1.02979 0.97010 1.22256 0.97631 0.97755 0.82607 1.86509 1.31700 1.90228 1.29718 1.20821 0.92627 0.97988 0.90517 1.19399 0.95169 0.94303 0.98087 1.20566 0.93270 0.97994 0.99972 1.20588 0.94209 0.98732 1.02974 1.20691 0.82787 0.97371 1.03564 1.98297 1.15118 1.97833 1.96172 1.20562 0.94487 0.95541 1.02449 1.20543 0.92963 0.95204 0.93738 0.92701 0.94989 1.00081 0.91884 0.96089 0.91395 0.90977 0.92038 0.92240 0.91204 0.91094 0.93789 0.93859 0.77732 0.91647 0.95181 0.86763 0.86781 0.86520 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.51 13.96 55.43 0.77 -23.74 16 2 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 3 Si 0.86 20.34 27.47 -169.99 -4.67 15.67 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.50 -12.75 5.93 -34.44 -0.20 -12.95 16 8 H 0.11 2.90 4.96 -52.49 -0.26 2.64 16 9 C 0.15 3.43 3.59 -4.97 -0.02 3.41 16 10 N -0.52 -10.00 4.56 -237.52 -1.08 -11.09 16 11 C 0.06 0.87 4.96 -3.82 -0.02 0.86 16 12 C -0.12 -1.70 5.17 -26.74 -0.14 -1.84 16 13 C -0.11 -1.29 5.21 -26.74 -0.14 -1.43 16 14 C -0.12 -1.40 5.58 -26.73 -0.15 -1.55 16 15 C 0.08 0.73 7.05 37.16 0.26 0.99 16 16 O -0.58 -6.05 13.66 -35.23 -0.48 -6.53 16 17 C 0.11 1.88 5.11 -4.97 -0.03 1.86 16 18 C -0.07 -1.32 3.46 -104.62 -0.36 -1.69 16 19 C -0.10 -1.81 9.49 -39.59 -0.38 -2.19 16 20 C -0.15 -2.72 9.83 -39.55 -0.39 -3.10 16 21 C -0.02 -0.35 6.32 -39.50 -0.25 -0.60 16 22 Cl -0.10 -1.87 28.96 -51.86 -1.50 -3.37 16 23 C -0.11 -2.33 9.70 -39.55 -0.38 -2.71 16 24 C -0.01 -0.11 5.90 -39.59 -0.23 -0.34 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.03 0.74 5.04 -51.93 -0.26 0.48 16 27 H -0.02 -0.41 7.41 -51.93 -0.38 -0.80 16 28 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 29 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 30 H 0.07 1.14 6.31 -51.93 -0.33 0.81 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 2.05 9.12 45.56 0.42 2.46 16 39 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 40 H 0.03 0.51 7.95 -51.93 -0.41 0.10 16 41 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 44 H 0.12 2.49 7.68 -52.49 -0.40 2.08 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -28.97 364.00 -10.27 -39.24 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.27 Total: 3.81 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.52 Total: -19.47 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.31 Total: -34.83 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.48 Total: -6.53 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -1.50 Total: -3.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.97 -10.27 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235963870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.107 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds