Wall clock time and date at job start Fri Apr 10 2020 22:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48503 * 109.46865 * 269.99480 * 3 2 1 5 5 H 1.48495 * 109.47017 * 29.99175 * 3 2 1 6 6 H 1.48491 * 109.47409 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99796 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99617 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46584 * 180.02562 * 9 7 2 11 11 C 1.46908 * 110.99675 * 193.95345 * 10 9 7 12 12 C 1.52999 * 109.47184 * 66.04815 * 11 10 9 13 13 C 1.52992 * 109.47124 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47124 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47131 * 179.97438 * 14 13 12 16 16 O 1.42897 * 109.47058 * 179.97438 * 15 14 13 17 17 C 1.46903 * 111.00277 * 70.00243 * 10 9 7 18 18 C 1.50699 * 109.46834 * 293.95077 * 17 10 9 19 19 C 1.38238 * 119.98782 * 270.25397 * 18 17 10 20 20 C 1.38212 * 120.01544 * 180.21353 * 19 18 17 21 21 C 1.38361 * 119.98341 * 359.50741 * 20 19 18 22 22 Cl 1.73597 * 120.00859 * 180.27890 * 21 20 19 23 23 C 1.38346 * 119.97306 * 0.25744 * 21 20 19 24 24 C 1.38210 * 119.98768 * 0.02562 * 23 21 20 25 25 H 0.96998 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47048 * 60.00205 * 9 7 2 27 27 H 1.08996 * 109.47043 * 299.99863 * 9 7 2 28 28 H 1.08997 * 109.46729 * 186.04709 * 11 10 9 29 29 H 1.08999 * 109.46785 * 306.04362 * 11 10 9 30 30 H 1.09003 * 109.46908 * 299.99935 * 12 11 10 31 31 H 1.08996 * 109.46983 * 59.99726 * 12 11 10 32 32 H 1.09003 * 109.47094 * 299.99723 * 13 12 11 33 33 H 1.09009 * 109.47430 * 59.99634 * 13 12 11 34 34 H 1.08997 * 109.47201 * 299.99506 * 14 13 12 35 35 H 1.08999 * 109.47630 * 59.99966 * 14 13 12 36 36 H 1.08997 * 109.47501 * 300.00108 * 15 14 13 37 37 H 1.09005 * 109.47397 * 60.00211 * 15 14 13 38 38 H 0.96709 * 114.00328 * 180.02562 * 16 15 14 39 39 H 1.08992 * 109.47144 * 173.95175 * 17 10 9 40 40 H 1.08996 * 109.46948 * 53.94679 * 17 10 9 41 41 H 1.08004 * 119.99455 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.01126 * 179.79322 * 20 19 18 43 43 H 1.08002 * 120.00348 * 180.02562 * 23 21 20 44 44 H 1.08002 * 119.99295 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4314 -2.6319 0.3323 12 6 5.6375 -2.1731 1.7772 13 6 7.1271 -2.2274 2.1220 14 6 7.3331 -1.7693 3.5672 15 6 8.8227 -1.8242 3.9122 16 8 9.0152 -1.3957 5.2617 17 6 3.7349 -3.2315 -1.2880 18 6 2.2472 -3.3772 -1.4794 19 6 1.6004 -4.5124 -1.0280 20 6 0.2367 -4.6486 -1.2072 21 6 -0.4826 -3.6438 -1.8295 22 17 -2.1966 -3.8109 -2.0485 23 6 0.1645 -2.5058 -2.2768 24 6 1.5291 -2.3734 -2.1022 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6805 -0.8888 28 1 5.7927 -3.6541 0.2206 29 1 5.9844 -1.9756 -0.3398 30 1 5.2762 -1.1508 1.8889 31 1 5.0845 -2.8293 2.4491 32 1 7.4888 -3.2496 2.0102 33 1 7.6799 -1.5709 1.4499 34 1 6.9714 -0.7472 3.6794 35 1 6.7805 -2.4261 4.2389 36 1 9.1842 -2.8464 3.8000 37 1 9.3758 -1.1675 3.2405 38 1 9.9385 -1.4047 5.5494 39 1 4.2009 -4.2168 -1.2996 40 1 4.1473 -2.6250 -2.0942 41 1 2.1614 -5.2949 -0.5385 42 1 -0.2680 -5.5370 -0.8574 43 1 -0.3966 -1.7210 -2.7622 44 1 2.0345 -1.4852 -2.4517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235963870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:40 Heat of formation + Delta-G solvation = -51.271727 kcal Electronic energy + Delta-G solvation = -23659.408247 eV Core-core repulsion = 20215.599898 eV Total energy + Delta-G solvation = -3443.808348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52100 -38.63308 -37.98101 -37.13255 -35.59275 -34.49685 -32.44568 -31.67611 -30.72402 -29.58193 -26.63791 -25.01177 -23.59974 -23.43734 -22.16140 -21.67422 -21.18776 -18.93598 -18.20419 -17.75129 -17.00652 -16.59295 -16.38681 -16.22129 -15.84224 -15.50073 -15.15242 -14.81194 -14.64003 -14.48453 -14.15005 -14.00293 -13.85881 -13.60401 -13.43624 -13.07486 -12.81061 -12.63680 -12.42355 -12.26178 -12.21537 -12.04098 -11.90841 -11.75708 -11.70461 -11.48934 -11.44351 -11.31713 -11.03461 -10.85764 -10.64248 -9.46598 -9.03839 -8.93177 -8.08016 -5.99849 0.55212 0.80427 1.32031 1.38261 1.41564 1.42847 2.40638 2.89611 3.24126 3.29763 3.58169 3.98590 4.06857 4.16708 4.18797 4.21104 4.29978 4.31036 4.46825 4.56298 4.64185 4.68299 4.69803 4.75585 4.83476 4.88665 4.94147 4.98641 5.00142 5.11536 5.14231 5.16380 5.25679 5.34869 5.44667 5.50381 5.59683 5.67174 5.73842 5.96075 6.16740 6.25508 6.46961 6.77030 6.92584 7.01976 7.50157 9.00995 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.003503 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.173576 B = 7991.836231 C = 9162.717700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.164 3.836 10 N -0.537 5.537 11 C 0.057 3.943 12 C -0.113 4.113 13 C -0.101 4.101 14 C -0.124 4.124 15 C 0.077 3.923 16 O -0.601 6.601 17 C 0.107 3.893 18 C -0.071 4.071 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.036 4.036 22 Cl -0.092 7.092 23 C -0.124 4.124 24 C -0.021 4.021 25 H 0.258 0.742 26 H 0.024 0.976 27 H -0.022 1.022 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.397 0.603 39 H 0.100 0.900 40 H 0.033 0.967 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.102 0.898 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.598 -8.316 -0.505 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.172 4.172 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.261 5.261 11 C -0.070 4.070 12 C -0.151 4.151 13 C -0.139 4.139 14 C -0.161 4.161 15 C -0.001 4.001 16 O -0.410 6.410 17 C -0.020 4.020 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.161 4.161 21 C -0.062 4.062 22 Cl -0.064 7.064 23 C -0.143 4.143 24 C -0.040 4.040 25 H 0.067 0.933 26 H 0.042 0.958 27 H -0.004 1.004 28 H 0.111 0.889 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.247 0.753 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.120 0.880 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.421 -8.393 -0.183 15.830 hybrid contribution 0.389 2.080 -0.421 2.157 sum 13.810 -6.313 -0.604 15.197 Atomic orbital electron populations 1.70030 1.07085 1.26701 1.51713 1.25405 0.95062 1.00748 0.95960 0.86316 0.79809 0.81968 0.78432 1.20071 1.22082 1.18438 1.21706 0.90430 0.94424 1.46246 0.90057 1.20098 0.95329 0.86429 0.94508 1.61955 1.15838 1.17857 1.30467 1.22156 0.87482 1.01610 0.95782 1.21539 0.96580 1.00602 0.96357 1.21356 0.95114 1.02658 0.94780 1.21530 0.96005 1.01441 0.97158 1.22242 0.96069 0.99205 0.82563 1.86450 1.33948 1.90416 1.30208 1.20932 0.91472 0.99680 0.89886 1.19677 0.96404 0.93974 0.97157 1.20943 0.93346 0.98291 0.99206 1.20957 0.94605 0.98929 1.01580 1.20860 0.83649 0.97568 1.04168 1.98290 1.14147 1.97770 1.96159 1.20573 0.94873 0.95848 1.03021 1.20527 0.93003 0.95577 0.94881 0.93306 0.95837 1.00407 0.88883 0.95462 0.94280 0.92118 0.89779 0.91296 0.93283 0.92170 0.91864 0.92613 0.75313 0.88134 0.94857 0.83770 0.84372 0.87967 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 13.96 21.45 0.30 -52.79 16 2 C 0.03 1.48 5.45 84.66 0.46 1.95 16 3 Si 0.91 42.62 27.47 68.60 1.88 44.51 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.49 -25.17 5.93 25.60 0.15 -25.02 16 8 H 0.08 4.54 4.96 -2.91 -0.01 4.53 16 9 C 0.16 7.18 3.59 85.56 0.31 7.49 16 10 N -0.54 -19.39 4.56 -905.36 -4.13 -23.52 16 11 C 0.06 1.59 4.96 86.30 0.43 2.01 16 12 C -0.11 -3.12 5.17 30.59 0.16 -2.96 16 13 C -0.10 -2.02 5.21 30.59 0.16 -1.86 16 14 C -0.12 -2.68 5.58 30.59 0.17 -2.51 16 15 C 0.08 1.28 7.05 71.98 0.51 1.79 16 16 O -0.60 -11.50 13.66 -148.98 -2.03 -13.53 16 17 C 0.11 3.46 5.11 85.56 0.44 3.90 16 18 C -0.07 -2.65 3.46 -19.86 -0.07 -2.72 16 19 C -0.10 -3.40 9.49 22.26 0.21 -3.19 16 20 C -0.14 -5.05 9.83 22.29 0.22 -4.83 16 21 C -0.04 -1.43 6.32 22.32 0.14 -1.29 16 22 Cl -0.09 -3.34 28.96 -2.72 -0.08 -3.42 16 23 C -0.12 -5.33 9.70 22.29 0.22 -5.11 16 24 C -0.02 -0.87 5.90 22.26 0.13 -0.74 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.02 1.08 5.04 -2.39 -0.01 1.07 16 27 H -0.02 -0.96 7.41 -2.39 -0.02 -0.98 16 28 H 0.09 2.06 7.93 -2.39 -0.02 2.04 16 29 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.04 1.29 6.31 -2.39 -0.02 1.28 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.40 3.45 9.12 -74.05 -0.68 2.78 16 39 H 0.10 2.55 7.88 -2.39 -0.02 2.53 16 40 H 0.03 1.06 7.95 -2.39 -0.02 1.04 16 41 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 43 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.10 4.51 7.68 -2.91 -0.02 4.49 16 Total: -1.00 -63.50 364.00 -0.17 -63.68 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.25 Total: 18.16 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.63 Total: -33.08 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.83 Total: -76.31 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -2.03 Total: -13.53 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.51 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.08 Total: -3.42 kcal Total: -63.50 -0.17 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235963870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.406 kcal (2) G-P(sol) polarization free energy of solvation -63.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds