Wall clock time and date at job start Fri Apr 10 2020 22:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86798 * 119.99429 * 2 1 4 4 H 1.48501 * 109.47051 * 90.00300 * 3 2 1 5 5 H 1.48501 * 109.47006 * 209.99891 * 3 2 1 6 6 H 1.48498 * 109.47713 * 329.99834 * 3 2 1 7 7 C 1.38641 * 120.00098 * 179.72657 * 2 1 3 8 8 H 1.08001 * 119.99819 * 0.02562 * 7 2 1 9 9 O 1.34804 * 119.99792 * 179.97438 * 7 2 1 10 10 C 1.35727 * 117.00344 * 174.75540 * 9 7 2 11 11 C 1.39455 * 120.37068 * 4.34162 * 10 9 7 12 12 C 1.38187 * 118.45875 * 179.73142 * 11 10 9 13 13 C 1.39505 * 119.14459 * 0.54469 * 12 11 10 14 14 C 1.48144 * 119.66269 * 179.74032 * 13 12 11 15 15 C 1.39592 * 120.57554 * 6.23034 * 14 13 12 16 16 C 1.38541 * 118.38975 * 179.78111 * 15 14 13 17 17 C 1.38208 * 119.45991 * 0.49321 * 16 15 14 18 18 N 1.31954 * 121.14689 * 359.74644 * 17 16 15 19 19 C 1.32336 * 121.74899 * 359.97438 * 18 17 16 20 20 N 1.38705 * 119.79619 * 180.02562 * 19 18 17 21 21 C 1.48538 * 111.00005 * 280.77655 * 20 19 18 22 22 C 1.54941 * 103.22536 * 159.72270 * 21 20 19 23 23 C 1.54596 * 102.91949 * 322.58145 * 22 21 20 24 24 C 1.47903 * 111.00091 * 38.17080 * 20 19 18 25 25 N 1.32735 * 120.67776 * 359.72132 * 13 12 11 26 26 C 1.31688 * 121.67552 * 359.97438 * 25 13 12 27 27 H 0.96999 * 120.00371 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.77494 * 359.97438 * 11 10 9 29 29 H 1.07996 * 120.42906 * 180.24221 * 12 11 10 30 30 H 1.08003 * 120.80530 * 359.97438 * 15 14 13 31 31 H 1.07998 * 120.27381 * 180.24348 * 16 15 14 32 32 H 1.08003 * 119.43112 * 179.76927 * 17 16 15 33 33 H 1.09000 * 110.66889 * 278.15590 * 21 20 19 34 34 H 1.08997 * 110.66264 * 41.28548 * 21 20 19 35 35 H 1.09008 * 110.71751 * 204.23204 * 22 21 20 36 36 H 1.08987 * 110.87930 * 81.01827 * 22 21 20 37 37 H 1.08991 * 110.31464 * 263.04337 * 23 22 21 38 38 H 1.09004 * 110.30439 * 140.87183 * 23 22 21 39 39 H 1.08996 * 109.91797 * 333.51236 * 24 20 19 40 40 H 1.09004 * 109.91070 * 94.80555 * 24 20 19 41 41 H 1.08001 * 119.60299 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 1.4001 5 1 3.5471 1.4403 -0.7000 6 1 1.4470 2.6527 -0.7000 7 6 2.0089 -1.2006 0.0057 8 1 1.4689 -2.1359 0.0098 9 8 3.3569 -1.2006 0.0052 10 6 3.9733 -2.4042 0.1215 11 6 3.2246 -3.5805 0.1442 12 6 3.8931 -4.7845 0.2583 13 6 5.2846 -4.7822 0.3580 14 6 6.0125 -6.0661 0.4866 15 6 5.3337 -7.2811 0.3793 16 6 6.0599 -8.4545 0.5023 17 6 7.4206 -8.3904 0.7359 18 7 8.0415 -7.2307 0.8389 19 6 7.3948 -6.0819 0.7236 20 7 8.0882 -4.8860 0.8384 21 6 8.3439 -4.5536 2.2634 22 6 9.5217 -3.5498 2.1874 23 6 10.3815 -4.1126 1.0324 24 6 9.4197 -4.9821 0.2017 25 7 5.9631 -3.6416 0.3384 26 6 5.3567 -2.4781 0.2247 27 1 -0.4850 0.8400 0.0004 28 1 2.1476 -3.5515 0.0703 29 1 3.3451 -5.7150 0.2751 30 1 4.2687 -7.3058 0.2015 31 1 5.5661 -9.4115 0.4205 32 1 7.9856 -9.3054 0.8355 33 1 7.4679 -4.0856 2.7124 34 1 8.6332 -5.4448 2.8203 35 1 10.0850 -3.5450 3.1206 36 1 9.1638 -2.5483 1.9493 37 1 11.1951 -4.7205 1.4278 38 1 10.7770 -3.2991 0.4242 39 1 9.7589 -6.0179 0.2048 40 1 9.3700 -4.6079 -0.8209 41 1 5.9419 -1.5705 0.2119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236122653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:44 Heat of formation + Delta-G solvation = 73.507477 kcal Electronic energy + Delta-G solvation = -25112.308163 eV Core-core repulsion = 21572.803153 eV Total energy + Delta-G solvation = -3539.505010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68446 -39.50262 -38.04169 -37.33326 -33.05507 -32.80988 -32.44575 -31.33247 -29.69470 -28.74595 -28.14960 -25.59141 -24.07569 -23.34282 -22.42792 -21.14430 -20.90925 -20.59971 -18.20630 -17.66606 -17.19383 -16.59034 -16.22891 -15.53457 -15.15032 -14.83703 -14.52974 -14.45315 -14.12241 -13.73072 -13.57516 -13.43707 -12.89130 -12.86164 -12.60765 -12.51271 -12.27829 -12.21153 -11.96472 -11.86545 -11.35788 -11.26917 -11.06432 -11.02646 -10.49027 -10.39127 -9.85494 -9.79458 -9.63429 -9.23590 -9.07743 -8.86556 -8.73525 -8.04355 -7.29827 -6.60655 -4.24766 0.87596 1.26696 1.99892 2.31630 3.13167 3.17185 3.30892 3.77734 3.90122 4.09650 4.44910 4.56162 4.60596 4.78258 4.82566 4.87304 4.94291 4.97210 5.06787 5.11195 5.29336 5.42107 5.45511 5.58920 5.61412 5.65915 5.76558 5.83965 5.88600 5.92623 6.00099 6.09888 6.13643 6.20695 6.24639 6.29994 6.42833 6.55352 6.85370 6.93469 6.95372 7.22860 7.53780 7.57738 7.80481 8.03372 8.72371 8.77425 9.31786 10.45711 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.003781 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.770680 B = 7402.841860 C = 8777.209862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.256 1.256 6 H -0.280 1.280 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.199 6.199 10 C 0.116 3.884 11 C -0.194 4.194 12 C -0.103 4.103 13 C 0.049 3.951 14 C -0.031 4.031 15 C -0.076 4.076 16 C -0.178 4.178 17 C 0.094 3.906 18 N -0.516 5.516 19 C 0.300 3.700 20 N -0.425 5.425 21 C 0.053 3.947 22 C -0.119 4.119 23 C -0.126 4.126 24 C 0.034 3.966 25 N -0.378 5.378 26 C 0.028 3.972 27 H 0.283 0.717 28 H 0.142 0.858 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.168 -12.047 2.499 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.180 1.180 6 H -0.206 1.206 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.101 6.101 10 C 0.059 3.941 11 C -0.219 4.219 12 C -0.123 4.123 13 C -0.086 4.086 14 C -0.036 4.036 15 C -0.103 4.103 16 C -0.198 4.198 17 C -0.064 4.064 18 N -0.228 5.228 19 C 0.070 3.930 20 N -0.147 5.147 21 C -0.073 4.073 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.094 4.094 25 N -0.086 5.086 26 C -0.136 4.136 27 H 0.093 0.907 28 H 0.160 0.840 29 H 0.138 0.862 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.488 -11.252 2.440 19.298 hybrid contribution -1.513 -0.091 0.031 1.516 sum 13.975 -11.343 2.470 18.167 Atomic orbital electron populations 1.69642 1.05701 1.28989 1.46100 1.24521 0.95076 0.99129 0.95141 0.86152 0.80447 0.81001 0.79248 1.19600 1.18028 1.20552 1.20818 0.76722 0.96837 1.52294 0.87485 1.83565 1.22824 1.25589 1.78089 1.20458 0.93401 0.85991 0.94212 1.21524 1.01470 0.91524 1.07428 1.21748 0.94155 0.97916 0.98460 1.18833 0.89309 0.90825 1.09665 1.19163 0.92480 0.92353 0.99576 1.21597 1.00538 0.91103 0.97080 1.21924 0.95568 0.98889 1.03403 1.22421 0.92151 0.95130 0.96736 1.67616 1.41465 0.98847 1.14895 1.20021 0.90389 0.87980 0.94645 1.62765 1.16345 1.23482 1.12058 1.23122 0.98724 0.97626 0.87828 1.22441 0.95603 0.99673 0.97968 1.22347 0.97674 0.99230 0.97176 1.22911 0.87668 1.00062 0.98740 1.67828 1.37680 0.96408 1.06712 1.21947 0.88936 0.96139 1.06611 0.90675 0.84027 0.86236 0.84489 0.84935 0.83347 0.89887 0.93917 0.91378 0.90277 0.91860 0.91179 0.91634 0.90790 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 13.96 55.48 0.77 -23.12 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 20.56 28.62 -169.99 -4.86 15.70 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.39 -10.42 9.95 30.88 0.31 -10.12 16 8 H 0.11 2.90 5.48 -52.49 -0.29 2.61 16 9 O -0.20 -4.94 8.59 0.19 0.00 -4.94 16 10 C 0.12 2.54 6.67 -38.88 -0.26 2.28 16 11 C -0.19 -3.95 9.25 -39.15 -0.36 -4.32 16 12 C -0.10 -1.81 9.46 -39.13 -0.37 -2.18 16 13 C 0.05 0.89 6.72 -82.94 -0.56 0.33 16 14 C -0.03 -0.50 5.90 -104.57 -0.62 -1.12 16 15 C -0.08 -0.99 9.51 -38.97 -0.37 -1.36 16 16 C -0.18 -1.94 10.09 -39.48 -0.40 -2.33 16 17 C 0.09 1.10 11.16 -17.51 -0.20 0.91 16 18 N -0.52 -7.45 8.70 -12.20 -0.11 -7.56 16 19 C 0.30 4.75 5.53 -154.94 -0.86 3.90 16 20 N -0.43 -6.53 3.00 -168.98 -0.51 -7.04 16 21 C 0.05 0.73 6.48 -1.89 -0.01 0.72 16 22 C -0.12 -1.35 7.06 -24.87 -0.18 -1.53 16 23 C -0.13 -1.38 6.93 -25.38 -0.18 -1.55 16 24 C 0.03 0.45 6.59 -2.76 -0.02 0.43 16 25 N -0.38 -7.20 8.04 -9.63 -0.08 -7.28 16 26 C 0.03 0.56 11.14 -17.36 -0.19 0.36 16 27 H 0.28 7.17 8.31 -40.82 -0.34 6.84 16 28 H 0.14 2.96 5.74 -52.49 -0.30 2.66 16 29 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 30 H 0.14 1.51 6.34 -52.48 -0.33 1.17 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.04 0.59 7.99 -51.93 -0.42 0.18 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.08 0.94 8.14 -51.94 -0.42 0.52 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.90 6.59 -51.93 -0.34 0.56 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -29.06 339.94 -8.96 -38.02 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.95 Total: 5.00 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -4.35 Total: -13.90 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.08 Total: -45.00 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.00 Total: -4.94 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.06 -8.96 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236122653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.527 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds