Wall clock time and date at job start Fri Apr 10 2020 22:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99800 * 2 1 4 4 H 1.48501 * 109.46849 * 239.99653 * 3 2 1 5 5 H 1.48497 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47172 * 119.99799 * 3 2 1 7 7 C 1.37874 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.17018 * 180.02562 * 9 7 2 11 11 N 1.47483 * 87.92959 * 220.13914 * 10 9 7 12 12 C 1.46897 * 111.00053 * 138.70134 * 11 10 9 13 13 C 1.50699 * 109.47031 * 170.00096 * 12 11 10 14 14 C 1.38163 * 120.02647 * 259.99911 * 13 12 11 15 15 C 1.38248 * 120.05806 * 180.02562 * 14 13 12 16 16 C 1.38294 * 120.11684 * 0.02761 * 15 14 13 17 17 C 1.38121 * 120.05231 * 359.94784 * 16 15 14 18 18 C 1.38727 * 120.03229 * 79.72737 * 13 12 11 19 19 O 1.35894 * 120.05496 * 359.97373 * 18 13 12 20 20 C 1.35679 * 117.99880 * 85.89079 * 19 18 13 21 21 C 1.39121 * 120.07557 * 185.47044 * 20 19 18 22 22 N 1.31961 * 119.91664 * 180.02562 * 21 20 19 23 23 C 1.32241 * 120.06730 * 359.97438 * 22 21 20 24 24 C 1.38200 * 120.15152 * 359.97438 * 23 22 21 25 25 N 1.32236 * 120.08088 * 359.72854 * 24 23 22 26 26 C 1.47487 * 87.83487 * 27.01071 * 11 10 9 27 27 H 0.96992 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.25198 * 312.95119 * 9 7 2 29 29 H 1.08993 * 113.47873 * 105.36982 * 10 9 7 30 30 H 1.09003 * 113.52979 * 334.90723 * 10 9 7 31 31 H 1.09003 * 109.47240 * 50.00135 * 12 11 10 32 32 H 1.09004 * 109.47313 * 289.99729 * 12 11 10 33 33 H 1.07997 * 119.97359 * 359.97438 * 14 13 12 34 34 H 1.07993 * 119.94489 * 179.97438 * 15 14 13 35 35 H 1.07991 * 119.97966 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.02772 * 180.02562 * 17 16 15 37 37 H 1.08008 * 120.04368 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.92662 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.95889 * 179.97438 * 24 23 22 40 40 H 1.08993 * 113.47440 * 87.76146 * 26 11 10 41 41 H 1.09007 * 113.47096 * 218.22238 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.1497 -3.7438 0.0018 11 7 1.2058 -4.3606 -0.9488 12 6 1.9221 -5.0910 -2.0030 13 6 0.9404 -5.9049 -2.8060 14 6 0.7986 -7.2570 -2.5597 15 6 -0.1013 -8.0044 -3.2963 16 6 -0.8614 -7.4014 -4.2818 17 6 -0.7238 -6.0500 -4.5317 18 6 0.1743 -5.2962 -3.7894 19 8 0.3075 -3.9653 -4.0295 20 6 1.2810 -3.5670 -4.8866 21 6 1.5308 -2.2117 -5.0768 22 7 2.4780 -1.8278 -5.9115 23 6 3.1896 -2.7299 -6.5663 24 6 2.9445 -4.0770 -6.3788 25 7 2.0007 -4.4684 -5.5393 26 6 0.8529 -2.9998 -1.3949 27 1 -0.4849 0.8400 -0.0004 28 1 0.4447 -2.5305 0.7333 29 1 2.1883 -4.2505 0.9660 30 1 3.1386 -3.5669 -0.4214 31 1 2.6587 -5.7541 -1.5493 32 1 2.4270 -4.3810 -2.6581 33 1 1.3919 -7.7306 -1.7915 34 1 -0.2104 -9.0612 -3.1025 35 1 -1.5634 -7.9874 -4.8562 36 1 -1.3179 -5.5794 -5.3011 37 1 0.9497 -1.4746 -4.5425 38 1 3.9646 -2.4131 -7.2487 39 1 3.5272 -4.8110 -6.9155 40 1 1.4953 -2.6236 -2.1910 41 1 -0.2077 -2.8762 -1.6143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238015561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:48 Heat of formation + Delta-G solvation = 92.141090 kcal Electronic energy + Delta-G solvation = -25775.409125 eV Core-core repulsion = 22236.712129 eV Total energy + Delta-G solvation = -3538.696996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49756 -40.01544 -38.63735 -37.62843 -34.08008 -33.07179 -31.97265 -31.32683 -29.84616 -28.40649 -25.67967 -24.95411 -24.74022 -24.19245 -22.88181 -22.29422 -20.87732 -18.88227 -18.61406 -17.92846 -16.78899 -16.73014 -16.40276 -16.00832 -15.37161 -14.89674 -14.77324 -14.62694 -14.29300 -14.03439 -13.84901 -13.53625 -13.02723 -12.89269 -12.67259 -12.36806 -11.88615 -11.70401 -11.63941 -11.51711 -11.34206 -11.17488 -10.93266 -10.79186 -10.55713 -10.24859 -9.74387 -9.35498 -9.27072 -8.92961 -8.79422 -8.75060 -8.53906 -8.38355 -7.99145 -6.02680 -4.07409 0.80357 1.09503 1.17876 1.42097 2.97548 3.32261 3.37318 3.39596 3.67730 3.84202 4.02981 4.29081 4.42507 4.49978 4.81649 4.86678 5.00101 5.00741 5.16446 5.23304 5.27354 5.35159 5.46031 5.53926 5.57188 5.71168 5.83410 6.04875 6.11513 6.17115 6.30391 6.39045 6.47642 6.49755 6.59415 6.67921 6.75834 6.80752 7.17258 7.19684 7.23290 7.43371 7.74026 7.76692 7.92457 8.07230 8.39325 8.94931 9.57380 11.06701 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012182 B = 0.005299 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.920298 B = 5282.834825 C = 6785.916190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.006 4.006 11 N -0.477 5.477 12 C 0.060 3.940 13 C -0.053 4.053 14 C -0.100 4.100 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.114 4.114 18 C 0.099 3.901 19 O -0.226 6.226 20 C 0.276 3.724 21 C 0.055 3.945 22 N -0.402 5.402 23 C 0.000 4.000 24 C 0.087 3.913 25 N -0.487 5.487 26 C 0.019 3.981 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.049 0.951 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -12.917 -12.732 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.022 3.978 10 C -0.135 4.135 11 N -0.199 5.199 12 C -0.068 4.068 13 C -0.054 4.054 14 C -0.119 4.119 15 C -0.133 4.133 16 C -0.136 4.136 17 C -0.133 4.133 18 C 0.056 3.944 19 O -0.129 6.129 20 C 0.096 3.904 21 C -0.108 4.108 22 N -0.117 5.117 23 C -0.158 4.158 24 C -0.072 4.072 25 N -0.216 5.216 26 C -0.110 4.110 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.199 0.801 38 H 0.187 0.813 39 H 0.187 0.813 40 H 0.067 0.933 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.772 -13.125 -12.357 18.114 hybrid contribution 1.186 1.153 -0.532 1.738 sum 2.958 -11.971 -12.889 17.838 Atomic orbital electron populations 1.69958 1.05924 1.26824 1.49411 1.24980 0.94782 0.98994 0.94570 0.86728 0.79745 0.83277 0.78708 1.20162 1.21172 1.20199 1.20954 0.92584 0.90241 1.51710 0.92660 1.20115 0.94205 0.90675 0.92835 1.24028 0.95682 0.97909 0.95849 1.68956 1.26756 1.14606 1.09591 1.21504 0.93968 0.97185 0.94166 1.20031 0.96230 0.93990 0.95149 1.20900 0.98922 0.92678 0.99359 1.21147 0.96280 0.99878 0.96026 1.20897 1.00072 0.93868 0.98730 1.21161 0.99114 0.94004 0.99014 1.18350 0.98009 0.81379 0.96653 1.84821 1.47930 1.22854 1.57297 1.21227 0.88621 0.91460 0.89122 1.23100 0.97156 0.92610 0.97961 1.68525 1.02691 1.37051 1.03430 1.23587 1.00719 0.90648 1.00816 1.23484 0.93591 0.96238 0.93916 1.68165 1.07452 1.37446 1.08513 1.24018 1.00313 0.86030 1.00600 0.92800 0.91783 0.91893 0.93069 0.91029 0.94051 0.85579 0.85820 0.85703 0.85796 0.80082 0.81251 0.81327 0.93276 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.26 55.43 0.74 -24.75 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.13 8.83 -34.44 -0.30 -14.43 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.69 16 10 C -0.01 -0.13 7.25 -7.54 -0.05 -0.19 16 11 N -0.48 -9.99 6.32 -246.07 -1.55 -11.54 16 12 C 0.06 1.09 4.70 -4.98 -0.02 1.06 16 13 C -0.05 -0.88 5.48 -104.47 -0.57 -1.45 16 14 C -0.10 -1.39 9.66 -39.61 -0.38 -1.77 16 15 C -0.12 -1.36 10.04 -39.56 -0.40 -1.76 16 16 C -0.12 -1.40 10.04 -39.60 -0.40 -1.79 16 17 C -0.11 -1.62 9.99 -39.43 -0.39 -2.01 16 18 C 0.10 1.65 4.94 -39.20 -0.19 1.45 16 19 O -0.23 -4.02 7.52 -2.92 -0.02 -4.04 16 20 C 0.28 4.52 6.30 -16.92 -0.11 4.41 16 21 C 0.06 0.89 11.18 -17.17 -0.19 0.70 16 22 N -0.40 -6.04 10.49 -12.92 -0.14 -6.18 16 23 C 0.00 0.00 11.21 -17.39 -0.19 -0.19 16 24 C 0.09 0.99 11.22 -17.39 -0.20 0.79 16 25 N -0.49 -7.19 9.49 -13.12 -0.12 -7.32 16 26 C 0.02 0.45 5.69 -7.54 -0.04 0.40 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 31 H 0.07 1.17 7.94 -51.93 -0.41 0.76 16 32 H 0.04 0.81 6.12 -51.93 -0.32 0.49 16 33 H 0.13 1.53 8.04 -52.49 -0.42 1.10 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.18 2.93 8.06 -52.48 -0.42 2.50 16 38 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 41 H 0.06 1.62 8.14 -51.92 -0.42 1.20 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -31.29 349.49 -10.02 -41.30 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.27 Total: 3.34 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.89 Total: -12.24 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -1.08 Total: -49.79 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.02 Total: -4.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.29 -10.02 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238015561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.444 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds