Wall clock time and date at job start Fri Apr 10 2020 22:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99800 * 2 1 4 4 H 1.48501 * 109.46849 * 239.99653 * 3 2 1 5 5 H 1.48497 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47172 * 119.99799 * 3 2 1 7 7 C 1.37874 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.17018 * 180.02562 * 9 7 2 11 11 N 1.47483 * 87.92959 * 220.13914 * 10 9 7 12 12 C 1.46897 * 111.00053 * 138.70134 * 11 10 9 13 13 C 1.50699 * 109.47031 * 170.00096 * 12 11 10 14 14 C 1.38163 * 120.02647 * 259.99911 * 13 12 11 15 15 C 1.38248 * 120.05806 * 180.02562 * 14 13 12 16 16 C 1.38294 * 120.11684 * 0.02761 * 15 14 13 17 17 C 1.38121 * 120.05231 * 359.94784 * 16 15 14 18 18 C 1.38727 * 120.03229 * 79.72737 * 13 12 11 19 19 O 1.35894 * 120.05496 * 359.97373 * 18 13 12 20 20 C 1.35679 * 117.99880 * 85.89079 * 19 18 13 21 21 C 1.39121 * 120.07557 * 185.47044 * 20 19 18 22 22 N 1.31961 * 119.91664 * 180.02562 * 21 20 19 23 23 C 1.32241 * 120.06730 * 359.97438 * 22 21 20 24 24 C 1.38200 * 120.15152 * 359.97438 * 23 22 21 25 25 N 1.32236 * 120.08088 * 359.72854 * 24 23 22 26 26 C 1.47487 * 87.83487 * 27.01071 * 11 10 9 27 27 H 0.96992 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.25198 * 312.95119 * 9 7 2 29 29 H 1.08993 * 113.47873 * 105.36982 * 10 9 7 30 30 H 1.09003 * 113.52979 * 334.90723 * 10 9 7 31 31 H 1.09003 * 109.47240 * 50.00135 * 12 11 10 32 32 H 1.09004 * 109.47313 * 289.99729 * 12 11 10 33 33 H 1.07997 * 119.97359 * 359.97438 * 14 13 12 34 34 H 1.07993 * 119.94489 * 179.97438 * 15 14 13 35 35 H 1.07991 * 119.97966 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.02772 * 180.02562 * 17 16 15 37 37 H 1.08008 * 120.04368 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.92662 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.95889 * 179.97438 * 24 23 22 40 40 H 1.08993 * 113.47440 * 87.76146 * 26 11 10 41 41 H 1.09007 * 113.47096 * 218.22238 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.1497 -3.7438 0.0018 11 7 1.2058 -4.3606 -0.9488 12 6 1.9221 -5.0910 -2.0030 13 6 0.9404 -5.9049 -2.8060 14 6 0.7986 -7.2570 -2.5597 15 6 -0.1013 -8.0044 -3.2963 16 6 -0.8614 -7.4014 -4.2818 17 6 -0.7238 -6.0500 -4.5317 18 6 0.1743 -5.2962 -3.7894 19 8 0.3075 -3.9653 -4.0295 20 6 1.2810 -3.5670 -4.8866 21 6 1.5308 -2.2117 -5.0768 22 7 2.4780 -1.8278 -5.9115 23 6 3.1896 -2.7299 -6.5663 24 6 2.9445 -4.0770 -6.3788 25 7 2.0007 -4.4684 -5.5393 26 6 0.8529 -2.9998 -1.3949 27 1 -0.4849 0.8400 -0.0004 28 1 0.4447 -2.5305 0.7333 29 1 2.1883 -4.2505 0.9660 30 1 3.1386 -3.5669 -0.4214 31 1 2.6587 -5.7541 -1.5493 32 1 2.4270 -4.3810 -2.6581 33 1 1.3919 -7.7306 -1.7915 34 1 -0.2104 -9.0612 -3.1025 35 1 -1.5634 -7.9874 -4.8562 36 1 -1.3179 -5.5794 -5.3011 37 1 0.9497 -1.4746 -4.5425 38 1 3.9646 -2.4131 -7.2487 39 1 3.5272 -4.8110 -6.9155 40 1 1.4953 -2.6236 -2.1910 41 1 -0.2077 -2.8762 -1.6143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238015561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:47 Heat of formation + Delta-G solvation = 69.592663 kcal Electronic energy + Delta-G solvation = -25776.386898 eV Core-core repulsion = 22236.712129 eV Total energy + Delta-G solvation = -3539.674769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61372 -41.23549 -40.28382 -38.71716 -35.16357 -34.93144 -33.51143 -32.37170 -30.94242 -29.98660 -27.40807 -26.62474 -26.04094 -25.29226 -24.45596 -23.39805 -22.15507 -20.54568 -19.97928 -19.03948 -18.66915 -17.82182 -17.55431 -17.20941 -16.75825 -16.56093 -16.12218 -15.94413 -15.66403 -15.56137 -15.11885 -14.88515 -14.29854 -14.04092 -13.89048 -13.83549 -13.43457 -13.30624 -13.18171 -12.88246 -12.73212 -12.54503 -12.48912 -12.33786 -12.17182 -11.80714 -11.58671 -11.26578 -10.91293 -10.51791 -10.33156 -9.90480 -9.85557 -9.76783 -9.59094 -8.16030 -6.27805 -0.24744 0.01899 0.12291 0.36513 1.40665 1.42241 1.49874 1.90148 2.40687 2.62365 2.75832 3.01220 3.12790 3.30020 3.37834 3.45958 3.67750 3.80036 4.03460 4.14977 4.17153 4.22510 4.26494 4.33732 4.45762 4.47391 4.51670 4.60586 4.65075 4.69857 4.81027 4.89889 4.99531 5.17702 5.22958 5.31081 5.39824 5.50115 5.56951 5.58757 5.82020 5.83131 6.13238 6.25066 6.29313 6.35060 6.69304 6.80112 7.40459 8.93615 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012182 B = 0.005299 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.920298 B = 5282.834825 C = 6785.916190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.021 3.979 10 C 0.009 3.991 11 N -0.475 5.475 12 C 0.068 3.932 13 C -0.083 4.083 14 C -0.103 4.103 15 C -0.108 4.108 16 C -0.106 4.106 17 C -0.129 4.129 18 C 0.075 3.925 19 O -0.252 6.252 20 C 0.260 3.740 21 C 0.024 3.976 22 N -0.424 5.424 23 C 0.011 3.989 24 C 0.098 3.902 25 N -0.498 5.498 26 C 0.044 3.956 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.023 0.977 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.215 0.785 39 H 0.217 0.783 40 H 0.039 0.961 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 -15.310 -14.227 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.119 4.119 11 N -0.197 5.197 12 C -0.060 4.060 13 C -0.084 4.084 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.148 4.148 18 C 0.032 3.968 19 O -0.156 6.156 20 C 0.082 3.918 21 C -0.137 4.137 22 N -0.139 5.139 23 C -0.149 4.149 24 C -0.062 4.062 25 N -0.226 5.226 26 C -0.085 4.085 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.178 0.822 38 H 0.231 0.769 39 H 0.234 0.766 40 H 0.058 0.942 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.425 -15.520 -13.820 21.061 hybrid contribution 0.715 1.767 -0.197 1.917 sum 4.140 -13.752 -14.016 20.068 Atomic orbital electron populations 1.70089 1.07478 1.27650 1.50490 1.25773 0.95548 1.02494 0.94172 0.85690 0.78518 0.78978 0.79002 1.19710 1.20782 1.19136 1.21257 0.92768 0.91375 1.51513 0.92563 1.20074 0.94474 0.92107 0.93165 1.23841 0.95146 0.95944 0.96976 1.68870 1.27244 1.13123 1.10433 1.21419 0.94588 0.96841 0.93149 1.20019 0.97189 0.95153 0.96051 1.21195 0.99459 0.91617 0.99903 1.21583 0.94680 1.01537 0.94737 1.21355 0.99759 0.92930 0.98335 1.21388 0.98953 0.95160 0.99266 1.18719 0.99186 0.81184 0.97692 1.84758 1.48747 1.24024 1.58100 1.21163 0.89238 0.91578 0.89854 1.22820 0.98615 0.92556 0.99674 1.68500 1.02967 1.38539 1.03858 1.24376 1.00196 0.90469 0.99826 1.24340 0.92193 0.97388 0.92294 1.68217 1.08099 1.37264 1.09055 1.23567 0.98200 0.87743 0.98995 0.92795 0.95060 0.90149 0.92563 0.89096 0.95908 0.83869 0.81957 0.82152 0.85336 0.82200 0.76871 0.76619 0.94248 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.26 21.45 0.28 -54.94 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -30.00 8.83 25.60 0.23 -29.77 16 8 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.02 1.11 3.76 -11.20 -0.04 1.07 16 10 C 0.01 0.41 7.25 83.58 0.61 1.02 16 11 N -0.47 -20.39 6.32 -932.44 -5.89 -26.28 16 12 C 0.07 2.48 4.70 85.56 0.40 2.88 16 13 C -0.08 -2.72 5.48 -19.77 -0.11 -2.83 16 14 C -0.10 -2.63 9.66 22.25 0.22 -2.41 16 15 C -0.11 -2.15 10.04 22.29 0.22 -1.92 16 16 C -0.11 -2.20 10.04 22.26 0.22 -1.97 16 17 C -0.13 -3.56 9.99 22.37 0.22 -3.34 16 18 C 0.07 2.53 4.94 22.51 0.11 2.64 16 19 O -0.25 -9.60 7.52 -33.35 -0.25 -9.85 16 20 C 0.26 8.95 6.30 84.80 0.53 9.48 16 21 C 0.02 0.84 11.18 84.89 0.95 1.79 16 22 N -0.42 -12.89 10.49 -194.80 -2.04 -14.93 16 23 C 0.01 0.23 11.21 84.62 0.95 1.18 16 24 C 0.10 2.00 11.22 84.62 0.95 2.94 16 25 N -0.50 -14.46 9.49 -308.15 -2.93 -17.39 16 26 C 0.04 2.20 5.69 83.58 0.48 2.68 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.03 1.85 8.11 -2.39 -0.02 1.83 16 29 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.06 2.39 7.87 -2.39 -0.02 2.37 16 31 H 0.09 2.88 7.94 -2.39 -0.02 2.86 16 32 H 0.02 0.91 6.12 -2.38 -0.01 0.90 16 33 H 0.14 3.04 8.04 -2.91 -0.02 3.02 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.16 2.15 8.06 -2.92 -0.02 2.13 16 36 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 38 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.04 2.02 6.95 -2.39 -0.02 2.00 16 41 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -72.34 349.49 -1.36 -73.70 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.04 Total: 18.28 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 6.40 Total: -14.97 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -10.57 Total: -113.54 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.25 Total: -9.85 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.34 -1.36 -73.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238015561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.289 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds