Wall clock time and date at job start Fri Apr 10 2020 22:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38888 * 119.23985 * 2 1 4 4 C 1.36864 * 119.81509 * 179.97438 * 3 2 1 5 5 C 1.41130 * 118.40266 * 359.72870 * 4 3 2 6 6 C 1.40834 * 120.72235 * 180.28530 * 5 4 3 7 7 H 1.08002 * 120.00184 * 150.80867 * 6 5 4 8 8 C 1.40031 * 120.00255 * 330.81203 * 6 5 4 9 9 N 1.30801 * 120.00019 * 162.83345 * 8 6 5 10 10 Si 1.86798 * 119.99775 * 342.83019 * 8 6 5 11 11 H 1.48494 * 109.47209 * 90.56994 * 10 8 6 12 12 H 1.48502 * 109.46997 * 210.57123 * 10 8 6 13 13 H 1.48500 * 109.47001 * 330.56680 * 10 8 6 14 14 C 1.41938 * 118.55162 * 0.51277 * 5 4 3 15 15 C 1.47647 * 119.99926 * 179.75427 * 14 5 4 16 16 C 1.39626 * 120.59820 * 316.64540 * 15 14 5 17 17 N 1.31466 * 120.77577 * 180.09309 * 16 15 14 18 18 C 1.33079 * 122.25477 * 0.03007 * 17 16 15 19 19 C 1.39521 * 120.18509 * 359.81234 * 18 17 16 20 20 C 1.38417 * 119.50508 * 0.02858 * 19 18 17 21 21 O 1.36030 * 121.64130 * 180.30392 * 19 18 17 22 22 C 1.43187 * 116.56786 * 345.57402 * 21 19 18 23 23 C 1.53429 * 107.80242 * 44.74330 * 22 21 19 24 24 N 1.38870 * 118.22263 * 179.68410 * 18 17 16 25 25 C 1.46908 * 111.00248 * 284.54618 * 24 18 17 26 26 N 1.31723 * 119.24101 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46917 * 270.01767 * 1 2 3 28 28 H 1.08996 * 109.47590 * 30.02045 * 1 2 3 29 29 H 1.09003 * 109.47113 * 150.02078 * 1 2 3 30 30 H 1.08000 * 120.09309 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.80065 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99838 * 180.02562 * 9 8 6 33 33 H 1.08006 * 119.61197 * 0.10460 * 16 15 14 34 34 H 1.08003 * 120.76777 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.79247 * 164.31575 * 22 21 19 36 36 H 1.09004 * 109.79493 * 285.16679 * 22 21 19 37 37 H 1.09003 * 109.60362 * 56.50202 * 23 22 21 38 38 H 1.08997 * 109.60739 * 176.82833 * 23 22 21 39 39 H 1.09000 * 109.46968 * 294.44376 * 25 24 18 40 40 H 1.09000 * 109.47090 * 54.44009 * 25 24 18 41 41 H 1.08997 * 109.47215 * 174.44427 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5540 1.2257 0.0005 5 6 4.2378 -0.0089 0.0069 6 6 5.6454 -0.0518 0.0138 7 1 6.1582 -0.8832 0.4746 8 6 6.3804 0.9836 -0.5767 9 7 7.6484 1.1308 -0.2914 10 14 5.5499 2.1545 -1.7720 11 1 5.0043 3.3175 -1.0271 12 1 6.5414 2.6275 -2.7712 13 1 4.4437 1.4492 -2.4679 14 6 3.4758 -1.2065 0.0014 15 6 4.1583 -2.5157 0.0024 16 6 5.2655 -2.7406 -0.8180 17 7 5.8747 -3.9056 -0.8212 18 6 5.4753 -4.9181 -0.0555 19 6 4.3779 -4.7659 0.7925 20 6 3.7084 -3.5550 0.8304 21 8 3.9481 -5.7789 1.5921 22 6 4.4565 -7.0852 1.3000 23 6 5.9651 -6.9567 1.0519 24 7 6.1764 -6.1145 -0.1305 25 6 5.8441 -6.8432 -1.3621 26 7 2.1505 -1.1494 0.0005 27 1 -0.3633 0.0003 1.0278 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6346 2.1409 0.0004 31 1 4.0977 2.1588 0.0010 32 1 8.1574 1.8483 -0.7002 33 1 5.6259 -1.9481 -1.4572 34 1 2.8567 -3.4146 1.4795 35 1 4.2767 -7.7489 2.1458 36 1 3.9683 -7.4806 0.4092 37 1 6.4403 -6.4967 1.9183 38 1 6.3932 -7.9446 0.8816 39 1 4.7981 -7.1483 -1.3327 40 1 6.0097 -6.1958 -2.2232 41 1 6.4779 -7.7261 -1.4441 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239603513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:51 Heat of formation + Delta-G solvation = 39.708521 kcal Electronic energy + Delta-G solvation = -25524.948114 eV Core-core repulsion = 21983.977471 eV Total energy + Delta-G solvation = -3540.970643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02769 -39.09302 -37.69860 -36.37450 -34.37268 -32.62870 -31.80374 -31.03265 -29.91251 -28.62349 -27.97258 -25.71306 -24.86616 -23.66429 -22.69230 -21.84614 -20.99424 -19.89567 -17.76827 -17.59919 -16.94532 -16.79531 -15.79609 -15.33727 -15.19856 -14.71501 -14.53681 -14.25823 -14.05479 -13.85086 -13.52211 -13.48442 -13.16143 -12.64009 -12.38714 -12.27583 -12.12515 -11.99772 -11.85820 -11.65668 -11.59802 -11.43347 -11.29053 -11.12988 -10.85632 -10.42728 -10.08192 -9.61282 -9.57514 -9.13047 -8.54976 -8.37725 -8.29900 -7.88755 -7.37707 -7.21090 -4.70526 1.38803 1.87655 2.33206 2.57904 2.92647 3.05055 3.13723 3.38166 3.54764 3.75032 4.23566 4.36255 4.49594 4.85470 4.87831 4.99987 5.15938 5.20800 5.27781 5.36658 5.38146 5.46086 5.71562 5.73843 5.76125 5.81020 5.88067 6.01471 6.11829 6.20729 6.25606 6.31998 6.38021 6.52790 6.69111 6.76676 6.79342 6.99360 7.04008 7.16731 7.29982 7.43644 7.62690 7.65918 8.05108 8.26109 8.44926 8.62365 9.27073 9.77382 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.004967 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.977237 B = 5635.331281 C = 7069.827847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.110 4.110 4 C -0.205 4.205 5 C 0.063 3.937 6 C -0.419 4.419 7 H 0.103 0.897 8 C 0.083 3.917 9 N -0.780 5.780 10 Si 0.912 3.088 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.244 1.244 14 C 0.032 3.968 15 C -0.005 4.005 16 C 0.118 3.882 17 N -0.457 5.457 18 C 0.213 3.787 19 C 0.034 3.966 20 C -0.083 4.083 21 O -0.309 6.309 22 C 0.020 3.980 23 C 0.022 3.978 24 N -0.480 5.480 25 C 0.033 3.967 26 N -0.434 5.434 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.292 0.708 33 H 0.173 0.827 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.029 0.971 40 H 0.081 0.919 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -9.590 -0.408 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.156 4.156 3 C -0.130 4.130 4 C -0.230 4.230 5 C 0.057 3.943 6 C -0.447 4.447 7 H 0.121 0.879 8 C -0.140 4.140 9 N -0.401 5.401 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.168 1.168 14 C -0.109 4.109 15 C -0.009 4.009 16 C -0.043 4.043 17 N -0.168 5.168 18 C -0.016 4.016 19 C -0.016 4.016 20 C -0.110 4.110 21 O -0.222 6.222 22 C -0.058 4.058 23 C -0.107 4.107 24 N -0.198 5.198 25 C -0.114 4.114 26 N -0.142 5.142 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.190 0.810 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.047 0.953 40 H 0.100 0.900 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.354 -10.325 -0.813 10.886 hybrid contribution -0.921 1.328 0.210 1.629 sum -4.275 -8.997 -0.603 9.979 Atomic orbital electron populations 1.20293 0.91026 1.01165 1.00726 1.20256 0.95105 0.88165 1.12042 1.21196 0.94773 0.97675 0.99399 1.21210 0.94107 0.97604 1.10128 1.18371 0.94315 0.90961 0.90633 1.19567 0.89508 1.06167 1.29431 0.87893 1.26276 0.94799 0.96626 0.96333 1.69661 1.08820 1.27843 1.33790 0.86333 0.79755 0.80234 0.79908 1.19163 1.21195 1.16761 1.19074 0.88181 0.90405 1.13219 1.19191 0.95290 0.92016 0.94407 1.22936 0.91773 0.92609 0.97030 1.67216 1.28276 0.99389 1.21914 1.19353 0.91113 0.92366 0.98804 1.19676 0.94348 0.90042 0.97550 1.20949 0.99988 0.90077 1.00023 1.86283 1.67550 1.15271 1.53078 1.23531 0.95733 0.83739 1.02769 1.22940 0.95176 0.98789 0.93747 1.58135 1.55426 1.02810 1.03420 1.22490 0.98784 0.98513 0.91582 1.66879 1.09399 1.29410 1.08551 0.92924 0.92747 0.92340 0.87650 0.86781 0.89749 0.81043 0.84453 0.87065 0.91764 0.88825 0.88239 0.95284 0.89975 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.15 36.01 0.37 -0.85 16 2 C -0.02 -0.32 6.79 -82.40 -0.56 -0.88 16 3 C -0.11 -2.28 9.64 -39.84 -0.38 -2.67 16 4 C -0.21 -4.65 7.31 -38.98 -0.29 -4.94 16 5 C 0.06 1.51 5.13 -106.40 -0.55 0.96 16 6 C -0.42 -10.43 7.20 -37.93 -0.27 -10.70 16 7 H 0.10 2.75 6.71 -52.49 -0.35 2.40 16 8 C 0.08 1.98 5.43 -17.32 -0.09 1.89 16 9 N -0.78 -19.18 13.93 55.55 0.77 -18.40 16 10 Si 0.91 19.10 24.53 -169.99 -4.17 14.93 16 11 H -0.27 -5.36 6.47 56.52 0.37 -5.00 16 12 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.24 -5.30 6.99 56.52 0.40 -4.90 16 14 C 0.03 0.74 6.45 -82.26 -0.53 0.21 16 15 C -0.01 -0.12 5.28 -104.77 -0.55 -0.67 16 16 C 0.12 2.58 9.05 -17.19 -0.16 2.42 16 17 N -0.46 -9.59 10.24 -11.93 -0.12 -9.71 16 18 C 0.21 4.03 5.94 -154.42 -0.92 3.11 16 19 C 0.03 0.64 6.47 -39.04 -0.25 0.38 16 20 C -0.08 -1.71 9.71 -38.75 -0.38 -2.09 16 21 O -0.31 -5.11 10.41 -19.84 -0.21 -5.31 16 22 C 0.02 0.23 7.07 37.38 0.26 0.49 16 23 C 0.02 0.26 5.99 -3.71 -0.02 0.24 16 24 N -0.48 -7.43 4.95 -180.67 -0.89 -8.32 16 25 C 0.03 0.41 9.32 60.07 0.56 0.97 16 26 N -0.43 -9.92 10.07 -5.46 -0.05 -9.98 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.11 2.51 4.52 -52.49 -0.24 2.27 16 32 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 33 H 0.17 3.80 6.72 -52.48 -0.35 3.45 16 34 H 0.14 2.76 8.06 -52.48 -0.42 2.34 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.70 6.68 -51.93 -0.35 0.35 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 0.82 8.00 -51.93 -0.42 0.41 16 39 H 0.03 0.34 6.68 -51.93 -0.35 -0.01 16 40 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 41 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -28.47 332.10 -8.45 -36.92 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.02 Total: 6.99 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.76 Total: -12.12 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.30 Total: -46.42 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.21 Total: -5.31 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.17 Total: 14.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.47 -8.45 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239603513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.629 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds