Wall clock time and date at job start Fri Apr 10 2020 22:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38888 * 119.23985 * 2 1 4 4 C 1.36864 * 119.81509 * 179.97438 * 3 2 1 5 5 C 1.41130 * 118.40266 * 359.72870 * 4 3 2 6 6 C 1.40834 * 120.72235 * 180.28530 * 5 4 3 7 7 H 1.08002 * 120.00184 * 150.80867 * 6 5 4 8 8 C 1.40031 * 120.00255 * 330.81203 * 6 5 4 9 9 N 1.30801 * 120.00019 * 162.83345 * 8 6 5 10 10 Si 1.86798 * 119.99775 * 342.83019 * 8 6 5 11 11 H 1.48494 * 109.47209 * 90.56994 * 10 8 6 12 12 H 1.48502 * 109.46997 * 210.57123 * 10 8 6 13 13 H 1.48500 * 109.47001 * 330.56680 * 10 8 6 14 14 C 1.41938 * 118.55162 * 0.51277 * 5 4 3 15 15 C 1.47647 * 119.99926 * 179.75427 * 14 5 4 16 16 C 1.39626 * 120.59820 * 316.64540 * 15 14 5 17 17 N 1.31466 * 120.77577 * 180.09309 * 16 15 14 18 18 C 1.33079 * 122.25477 * 0.03007 * 17 16 15 19 19 C 1.39521 * 120.18509 * 359.81234 * 18 17 16 20 20 C 1.38417 * 119.50508 * 0.02858 * 19 18 17 21 21 O 1.36030 * 121.64130 * 180.30392 * 19 18 17 22 22 C 1.43187 * 116.56786 * 345.57402 * 21 19 18 23 23 C 1.53429 * 107.80242 * 44.74330 * 22 21 19 24 24 N 1.38870 * 118.22263 * 179.68410 * 18 17 16 25 25 C 1.46908 * 111.00248 * 284.54618 * 24 18 17 26 26 N 1.31723 * 119.24101 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46917 * 270.01767 * 1 2 3 28 28 H 1.08996 * 109.47590 * 30.02045 * 1 2 3 29 29 H 1.09003 * 109.47113 * 150.02078 * 1 2 3 30 30 H 1.08000 * 120.09309 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.80065 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99838 * 180.02562 * 9 8 6 33 33 H 1.08006 * 119.61197 * 0.10460 * 16 15 14 34 34 H 1.08003 * 120.76777 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.79247 * 164.31575 * 22 21 19 36 36 H 1.09004 * 109.79493 * 285.16679 * 22 21 19 37 37 H 1.09003 * 109.60362 * 56.50202 * 23 22 21 38 38 H 1.08997 * 109.60739 * 176.82833 * 23 22 21 39 39 H 1.09000 * 109.46968 * 294.44376 * 25 24 18 40 40 H 1.09000 * 109.47090 * 54.44009 * 25 24 18 41 41 H 1.08997 * 109.47215 * 174.44427 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5540 1.2257 0.0005 5 6 4.2378 -0.0089 0.0069 6 6 5.6454 -0.0518 0.0138 7 1 6.1582 -0.8832 0.4746 8 6 6.3804 0.9836 -0.5767 9 7 7.6484 1.1308 -0.2914 10 14 5.5499 2.1545 -1.7720 11 1 5.0043 3.3175 -1.0271 12 1 6.5414 2.6275 -2.7712 13 1 4.4437 1.4492 -2.4679 14 6 3.4758 -1.2065 0.0014 15 6 4.1583 -2.5157 0.0024 16 6 5.2655 -2.7406 -0.8180 17 7 5.8747 -3.9056 -0.8212 18 6 5.4753 -4.9181 -0.0555 19 6 4.3779 -4.7659 0.7925 20 6 3.7084 -3.5550 0.8304 21 8 3.9481 -5.7789 1.5921 22 6 4.4565 -7.0852 1.3000 23 6 5.9651 -6.9567 1.0519 24 7 6.1764 -6.1145 -0.1305 25 6 5.8441 -6.8432 -1.3621 26 7 2.1505 -1.1494 0.0005 27 1 -0.3633 0.0003 1.0278 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6346 2.1409 0.0004 31 1 4.0977 2.1588 0.0010 32 1 8.1574 1.8483 -0.7002 33 1 5.6259 -1.9481 -1.4572 34 1 2.8567 -3.4146 1.4795 35 1 4.2767 -7.7489 2.1458 36 1 3.9683 -7.4806 0.4092 37 1 6.4403 -6.4967 1.9183 38 1 6.3932 -7.9446 0.8816 39 1 4.7981 -7.1483 -1.3327 40 1 6.0097 -6.1958 -2.2232 41 1 6.4779 -7.7261 -1.4441 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239603513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:50 Heat of formation + Delta-G solvation = 20.617463 kcal Electronic energy + Delta-G solvation = -25525.775964 eV Core-core repulsion = 21983.977471 eV Total energy + Delta-G solvation = -3541.798493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38473 -40.75138 -39.18508 -37.62132 -36.12786 -34.23164 -33.53502 -32.48447 -31.31620 -29.93472 -29.45075 -27.04921 -26.23166 -25.18696 -24.21053 -23.43405 -22.61760 -21.29396 -19.47810 -19.05638 -18.23269 -18.21302 -17.48106 -16.95624 -16.46355 -16.12606 -15.93608 -15.59235 -15.42246 -15.24777 -15.14449 -15.03588 -14.62921 -14.07511 -14.02978 -13.70393 -13.60508 -13.31905 -13.13535 -13.04815 -12.95889 -12.84800 -12.62487 -12.45417 -12.22814 -12.06622 -11.81858 -11.35115 -11.05144 -10.73270 -10.26104 -10.03377 -9.73189 -9.51399 -9.00629 -8.88679 -6.54457 -0.21306 0.28050 0.63580 0.84478 1.22636 1.37275 1.45672 2.04318 2.15583 2.33366 2.54406 2.70607 3.30498 3.42891 3.64224 3.75740 3.86969 3.97412 4.04809 4.09272 4.16617 4.21386 4.32719 4.45685 4.48514 4.56594 4.58056 4.69642 4.74584 4.82848 4.86549 4.90125 4.94299 4.99052 5.17031 5.23814 5.31073 5.40035 5.56802 5.65215 5.74502 5.87042 5.93548 6.19150 6.23885 6.50122 6.61164 7.04888 7.54078 8.05277 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.004967 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.977237 B = 5635.331281 C = 7069.827847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 C -0.113 4.113 4 C -0.214 4.214 5 C 0.045 3.955 6 C -0.444 4.444 7 H 0.066 0.934 8 C 0.053 3.947 9 N -0.822 5.822 10 Si 0.961 3.039 11 H -0.247 1.247 12 H -0.273 1.273 13 H -0.258 1.258 14 C 0.020 3.980 15 C -0.027 4.027 16 C 0.108 3.892 17 N -0.476 5.476 18 C 0.219 3.781 19 C 0.039 3.961 20 C -0.091 4.091 21 O -0.319 6.319 22 C 0.013 3.987 23 C 0.020 3.980 24 N -0.496 5.496 25 C 0.033 3.967 26 N -0.454 5.454 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.300 0.700 33 H 0.155 0.845 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 -10.823 -0.347 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C -0.132 4.132 4 C -0.240 4.240 5 C 0.040 3.960 6 C -0.472 4.472 7 H 0.084 0.916 8 C -0.166 4.166 9 N -0.446 5.446 10 Si 0.784 3.216 11 H -0.172 1.172 12 H -0.199 1.199 13 H -0.182 1.182 14 C -0.119 4.119 15 C -0.031 4.031 16 C -0.053 4.053 17 N -0.188 5.188 18 C -0.012 4.012 19 C -0.012 4.012 20 C -0.118 4.118 21 O -0.232 6.232 22 C -0.063 4.063 23 C -0.107 4.107 24 N -0.215 5.215 25 C -0.112 4.112 26 N -0.162 5.162 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.163 0.837 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.444 -11.582 -0.743 12.819 hybrid contribution -0.410 1.435 0.278 1.518 sum -5.854 -10.147 -0.465 11.724 Atomic orbital electron populations 1.20409 0.87401 1.02805 1.02350 1.21220 0.97585 0.87767 1.08661 1.21640 0.94108 0.99449 0.98034 1.21426 0.95339 0.97144 1.10079 1.18538 0.94134 0.92115 0.91175 1.19324 0.90106 1.06063 1.31705 0.91574 1.26858 0.95102 0.97554 0.97064 1.69683 1.09942 1.29357 1.35616 0.85593 0.78737 0.78916 0.78364 1.17179 1.19908 1.18205 1.19338 0.88740 0.90922 1.12925 1.19190 0.95893 0.92346 0.95643 1.22643 0.92244 0.92839 0.97568 1.67201 1.28695 0.99725 1.23163 1.19742 0.90775 0.93272 0.97381 1.19602 0.93873 0.90340 0.97372 1.20973 1.00267 0.90639 0.99909 1.86271 1.67825 1.16671 1.52460 1.23997 0.95351 0.81665 1.05260 1.23158 0.95609 1.00078 0.91897 1.58208 1.54827 1.02501 1.05958 1.22570 1.00338 0.98888 0.89394 1.67011 1.08985 1.30612 1.09623 0.91166 0.89706 0.92168 0.83500 0.86217 0.88922 0.82812 0.84490 0.83069 0.90466 0.89887 0.83708 0.94209 0.92110 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.11 10.15 71.24 0.72 -1.38 16 2 C -0.01 -0.44 6.79 42.73 0.29 -0.15 16 3 C -0.11 -4.41 9.64 22.10 0.21 -4.19 16 4 C -0.21 -9.66 7.31 22.66 0.17 -9.49 16 5 C 0.05 2.27 5.13 -21.02 -0.11 2.16 16 6 C -0.44 -23.65 7.20 23.34 0.17 -23.48 16 7 H 0.07 3.90 6.71 -2.91 -0.02 3.88 16 8 C 0.05 2.65 5.43 85.28 0.46 3.12 16 9 N -0.82 -42.64 13.93 21.84 0.30 -42.34 16 10 Si 0.96 39.87 24.53 68.60 1.68 41.55 16 11 H -0.25 -9.41 6.47 99.48 0.64 -8.76 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 13 H -0.26 -11.15 6.99 99.48 0.70 -10.46 16 14 C 0.02 0.96 6.45 42.42 0.27 1.23 16 15 C -0.03 -1.27 5.28 -19.96 -0.11 -1.37 16 16 C 0.11 5.07 9.05 85.08 0.77 5.84 16 17 N -0.48 -21.04 10.24 -191.66 -1.96 -23.01 16 18 C 0.22 8.40 5.94 133.00 0.79 9.19 16 19 C 0.04 1.48 6.47 22.62 0.15 1.63 16 20 C -0.09 -3.87 9.71 22.81 0.22 -3.65 16 21 O -0.32 -10.08 10.41 -93.89 -0.98 -11.06 16 22 C 0.01 0.26 7.07 72.13 0.51 0.77 16 23 C 0.02 0.40 5.99 86.49 0.52 0.92 16 24 N -0.50 -14.63 4.95 -725.51 -3.59 -18.23 16 25 C 0.03 0.76 9.32 127.69 1.19 1.96 16 26 N -0.45 -20.77 10.07 -171.19 -1.72 -22.50 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.12 5.17 4.52 -2.91 -0.01 5.16 16 32 H 0.30 13.86 8.30 -92.70 -0.77 13.09 16 33 H 0.15 7.59 6.72 -2.91 -0.02 7.57 16 34 H 0.14 5.69 8.06 -2.91 -0.02 5.67 16 35 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.38 6.68 -2.39 -0.02 1.36 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.15 1.67 8.00 -2.39 -0.02 1.65 16 39 H 0.04 0.83 6.68 -2.39 -0.02 0.81 16 40 H 0.06 1.65 8.02 -2.39 -0.02 1.63 16 41 H 0.11 1.71 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -66.42 332.10 0.96 -65.46 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.99 Total: 27.01 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 6.23 Total: -16.90 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -6.97 Total: -106.06 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.98 Total: -11.06 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.68 Total: 41.55 kcal Total: -66.42 0.96 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239603513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.080 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds