Wall clock time and date at job start Fri Apr 10 2020 22:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86799 * 119.99470 * 2 1 4 4 H 1.48500 * 109.47028 * 240.00179 * 3 2 1 5 5 H 1.48501 * 109.47494 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47117 * 120.00261 * 3 2 1 7 7 C 1.39967 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00669 * 197.82715 * 7 2 1 9 9 C 1.41008 * 119.99559 * 17.83059 * 7 2 1 10 10 C 1.40943 * 120.11825 * 24.84742 * 9 7 2 11 11 C 1.36212 * 119.88532 * 180.25154 * 10 9 7 12 12 C 1.39996 * 120.11550 * 359.50247 * 11 10 9 13 13 C 1.47895 * 119.88441 * 180.27455 * 12 11 10 14 14 C 1.40043 * 120.86808 * 359.71989 * 13 12 11 15 15 N 1.32035 * 119.00665 * 179.71472 * 14 13 12 16 16 C 1.32610 * 120.90245 * 0.57005 * 15 14 13 17 17 N 1.38203 * 119.04588 * 179.67843 * 16 15 14 18 18 C 1.47013 * 110.99838 * 123.65635 * 17 16 15 19 19 C 1.53096 * 109.25763 * 177.61223 * 18 17 16 20 20 O 1.43016 * 109.26224 * 56.84554 * 19 18 17 21 21 C 1.43011 * 113.73949 * 301.33216 * 20 19 18 22 22 C 1.47012 * 110.99870 * 0.02562 * 17 16 15 23 23 N 1.32601 * 121.91099 * 359.69848 * 16 15 14 24 24 C 1.32036 * 120.90114 * 0.02562 * 23 16 15 25 25 C 1.39990 * 120.22439 * 0.25010 * 12 11 10 26 26 C 1.36213 * 120.11951 * 0.02562 * 25 12 11 27 27 H 0.97001 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.05666 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.94600 * 179.77326 * 11 10 9 30 30 H 1.07997 * 120.49270 * 359.97346 * 14 13 12 31 31 H 1.09011 * 109.50636 * 297.54150 * 18 17 16 32 32 H 1.08993 * 109.51052 * 57.67255 * 18 17 16 33 33 H 1.09005 * 109.50348 * 296.91565 * 19 18 17 34 34 H 1.09002 * 109.54465 * 176.80717 * 19 18 17 35 35 H 1.09000 * 109.50872 * 298.73786 * 21 20 19 36 36 H 1.08999 * 109.54704 * 178.62370 * 21 20 19 37 37 H 1.09000 * 109.50700 * 302.32692 * 22 17 16 38 38 H 1.09000 * 109.51066 * 62.45189 * 22 17 16 39 39 H 1.08004 * 120.49916 * 180.02562 * 24 23 16 40 40 H 1.08002 * 119.93724 * 180.02562 * 25 12 11 41 41 H 1.08003 * 120.05453 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.0957 1.6966 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0958 1.6965 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0492 -1.2347 0.2858 9 6 1.3539 -2.4038 -0.3750 10 6 0.2265 -2.3563 -1.2196 11 6 -0.4049 -3.5100 -1.5742 12 6 0.0703 -4.7422 -1.1097 13 6 -0.6156 -5.9921 -1.5029 14 6 -1.7432 -5.9624 -2.3327 15 7 -2.3235 -7.1008 -2.6654 16 6 -1.8592 -8.2588 -2.2158 17 7 -2.5003 -9.4268 -2.5828 18 6 -1.5667 -10.3588 -3.2316 19 6 -2.3024 -11.6588 -3.5670 20 8 -3.4322 -11.3622 -4.3921 21 6 -4.3626 -10.4577 -3.7909 22 6 -3.6477 -9.1454 -3.4578 23 7 -0.7978 -8.3285 -1.4240 24 6 -0.1579 -7.2358 -1.0500 25 6 1.1928 -4.7952 -0.2749 26 6 1.8280 -3.6469 0.0902 27 1 -0.4851 0.8400 0.0004 28 1 -0.1382 -1.4065 -1.5820 29 1 -1.2711 -3.4744 -2.2184 30 1 -2.1299 -5.0227 -2.6986 31 1 -1.1833 -9.9106 -4.1484 32 1 -0.7383 -10.5731 -2.5565 33 1 -2.6393 -12.1343 -2.6458 34 1 -1.6297 -12.3316 -4.0990 35 1 -4.7593 -10.8982 -2.8762 36 1 -5.1801 -10.2609 -4.4845 37 1 -4.3384 -8.4739 -2.9477 38 1 -3.2976 -8.6778 -4.3781 39 1 0.7062 -7.3001 -0.4052 40 1 1.5557 -5.7484 0.0804 41 1 2.6942 -3.6891 0.7340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240480760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:59 Heat of formation + Delta-G solvation = 38.115851 kcal Electronic energy + Delta-G solvation = -24224.294740 eV Core-core repulsion = 20683.255034 eV Total energy + Delta-G solvation = -3541.039706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.94581 -39.33131 -37.77328 -35.85076 -34.14834 -33.44849 -31.78453 -31.33920 -29.81998 -29.11411 -27.32544 -25.06566 -24.95660 -23.49238 -22.81545 -21.02346 -20.68806 -20.24890 -18.09586 -17.58014 -17.01619 -16.16872 -16.01984 -15.50541 -15.34972 -15.25608 -15.07751 -14.57618 -14.33969 -13.76223 -13.62813 -13.43207 -13.20360 -12.83536 -12.51661 -12.20643 -12.06997 -11.72426 -11.66315 -11.57105 -11.34555 -11.27223 -10.88951 -10.87909 -10.55267 -10.44184 -10.15365 -9.90968 -9.75169 -9.65984 -9.36294 -8.80604 -8.43936 -7.81164 -7.21948 -7.05057 -4.58796 1.12197 1.51557 2.62534 2.89936 2.91926 2.92730 3.03318 3.26870 3.66751 3.68919 4.09761 4.39573 4.48903 4.74938 4.78095 4.94231 4.97255 5.06660 5.09202 5.16570 5.40997 5.45178 5.47218 5.50932 5.56864 5.68793 5.80321 5.85073 6.01330 6.13251 6.17578 6.53139 6.61980 6.72065 6.76810 6.90840 6.97427 7.05154 7.08351 7.33845 7.44289 7.70257 7.76851 7.85087 7.97965 8.32221 8.50776 8.54934 8.66800 9.82159 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.043460 B = 0.002399 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.120907 B =11670.034612 C =12140.233780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.438 4.438 8 H 0.085 0.915 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.072 4.072 12 C -0.202 4.202 13 C -0.090 4.090 14 C 0.132 3.868 15 N -0.537 5.537 16 C 0.430 3.570 17 N -0.458 5.458 18 C 0.030 3.970 19 C 0.065 3.935 20 O -0.387 6.387 21 C 0.062 3.938 22 C 0.036 3.964 23 N -0.515 5.515 24 C 0.132 3.868 25 C -0.059 4.059 26 C -0.228 4.228 27 H 0.288 0.712 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.164 0.836 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.166 0.834 40 H 0.093 0.907 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -11.792 -5.009 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.103 0.897 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.091 4.091 12 C -0.205 4.205 13 C -0.095 4.095 14 C -0.035 4.035 15 N -0.254 5.254 16 C 0.075 3.925 17 N -0.180 5.180 18 C -0.097 4.097 19 C -0.012 4.012 20 O -0.305 6.305 21 C -0.015 4.015 22 C -0.092 4.092 23 N -0.232 5.232 24 C -0.036 4.036 25 C -0.077 4.077 26 C -0.247 4.247 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.181 0.819 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.183 0.817 40 H 0.111 0.889 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.950 -12.845 -5.040 14.660 hybrid contribution 1.007 2.197 0.139 2.421 sum -3.944 -10.648 -4.901 12.367 Atomic orbital electron populations 1.69803 1.07835 1.30248 1.31564 1.26080 0.94857 1.01945 0.92024 0.86245 0.80194 0.79423 0.80354 1.18455 1.20004 1.18646 1.19762 0.98377 0.91305 1.37092 0.89741 1.17765 0.90726 0.92142 0.87696 1.20991 0.99558 0.97021 1.01405 1.20464 0.97883 0.92300 0.98445 1.17717 1.01878 0.89881 1.11037 1.20597 0.96018 0.95570 0.97346 1.23066 0.91499 0.95418 0.93556 1.68067 1.33798 0.98798 1.24786 1.20585 0.90053 0.88289 0.93598 1.58687 1.08776 1.09401 1.41119 1.22851 0.95484 0.93000 0.98413 1.22709 0.87859 0.95136 0.95520 1.87977 1.34024 1.65014 1.43517 1.22782 0.91607 0.88445 0.98710 1.22646 0.92576 0.97843 0.96147 1.67717 1.08767 1.33477 1.13202 1.23092 0.97767 0.86407 0.96375 1.20347 0.94461 0.96803 0.96104 1.20687 1.04155 0.92741 1.07161 0.90104 0.86220 0.88981 0.81873 0.93383 0.87985 0.91935 0.87975 0.92214 0.87953 0.88575 0.92304 0.81750 0.88878 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.15 10.96 55.55 0.61 -17.54 16 2 C 0.07 1.64 5.13 -17.34 -0.09 1.55 16 3 Si 0.91 16.88 29.60 -169.99 -5.03 11.85 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.28 -4.97 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.44 -10.52 9.03 -37.89 -0.34 -10.86 16 8 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.12 2.92 5.57 -106.80 -0.60 2.32 16 10 C -0.17 -4.05 8.63 -39.29 -0.34 -4.39 16 11 C -0.07 -1.55 9.38 -39.65 -0.37 -1.92 16 12 C -0.20 -4.17 5.90 -104.63 -0.62 -4.79 16 13 C -0.09 -1.68 5.91 -104.59 -0.62 -2.30 16 14 C 0.13 2.34 10.70 -16.79 -0.18 2.16 16 15 N -0.54 -9.43 8.66 -13.62 -0.12 -9.55 16 16 C 0.43 7.43 7.17 -322.81 -2.31 5.12 16 17 N -0.46 -6.71 4.78 -175.09 -0.84 -7.55 16 18 C 0.03 0.37 5.49 -3.71 -0.02 0.35 16 19 C 0.06 0.65 7.01 37.21 0.26 0.91 16 20 O -0.39 -4.45 10.83 -35.23 -0.38 -4.84 16 21 C 0.06 0.63 7.01 37.21 0.26 0.89 16 22 C 0.04 0.45 4.79 -3.71 -0.02 0.43 16 23 N -0.52 -9.11 9.70 -13.61 -0.13 -9.24 16 24 C 0.13 2.30 10.70 -16.79 -0.18 2.12 16 25 C -0.06 -1.20 9.38 -39.65 -0.37 -1.58 16 26 C -0.23 -5.10 9.73 -39.29 -0.38 -5.48 16 27 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 28 H 0.12 2.91 6.17 -52.48 -0.32 2.59 16 29 H 0.09 1.74 6.26 -52.48 -0.33 1.41 16 30 H 0.16 2.62 6.31 -52.49 -0.33 2.28 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.10 1.27 7.66 -51.93 -0.40 0.87 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.24 7.83 -51.93 -0.41 0.83 16 38 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 39 H 0.17 2.52 6.31 -52.48 -0.33 2.19 16 40 H 0.09 1.63 6.26 -52.49 -0.33 1.30 16 41 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -26.86 337.13 -11.67 -38.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.95 Total: 8.72 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -5.92 Total: -15.47 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.48 Total: -43.88 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.38 Total: -4.84 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.86 -11.67 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240480760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.648 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds