Wall clock time and date at job start Fri Apr 10 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86799 * 119.99470 * 2 1 4 4 H 1.48500 * 109.47028 * 240.00179 * 3 2 1 5 5 H 1.48501 * 109.47494 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47117 * 120.00261 * 3 2 1 7 7 C 1.39967 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00669 * 197.82715 * 7 2 1 9 9 C 1.41008 * 119.99559 * 17.83059 * 7 2 1 10 10 C 1.40943 * 120.11825 * 24.84742 * 9 7 2 11 11 C 1.36212 * 119.88532 * 180.25154 * 10 9 7 12 12 C 1.39996 * 120.11550 * 359.50247 * 11 10 9 13 13 C 1.47895 * 119.88441 * 180.27455 * 12 11 10 14 14 C 1.40043 * 120.86808 * 359.71989 * 13 12 11 15 15 N 1.32035 * 119.00665 * 179.71472 * 14 13 12 16 16 C 1.32610 * 120.90245 * 0.57005 * 15 14 13 17 17 N 1.38203 * 119.04588 * 179.67843 * 16 15 14 18 18 C 1.47013 * 110.99838 * 123.65635 * 17 16 15 19 19 C 1.53096 * 109.25763 * 177.61223 * 18 17 16 20 20 O 1.43016 * 109.26224 * 56.84554 * 19 18 17 21 21 C 1.43011 * 113.73949 * 301.33216 * 20 19 18 22 22 C 1.47012 * 110.99870 * 0.02562 * 17 16 15 23 23 N 1.32601 * 121.91099 * 359.69848 * 16 15 14 24 24 C 1.32036 * 120.90114 * 0.02562 * 23 16 15 25 25 C 1.39990 * 120.22439 * 0.25010 * 12 11 10 26 26 C 1.36213 * 120.11951 * 0.02562 * 25 12 11 27 27 H 0.97001 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.05666 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.94600 * 179.77326 * 11 10 9 30 30 H 1.07997 * 120.49270 * 359.97346 * 14 13 12 31 31 H 1.09011 * 109.50636 * 297.54150 * 18 17 16 32 32 H 1.08993 * 109.51052 * 57.67255 * 18 17 16 33 33 H 1.09005 * 109.50348 * 296.91565 * 19 18 17 34 34 H 1.09002 * 109.54465 * 176.80717 * 19 18 17 35 35 H 1.09000 * 109.50872 * 298.73786 * 21 20 19 36 36 H 1.08999 * 109.54704 * 178.62370 * 21 20 19 37 37 H 1.09000 * 109.50700 * 302.32692 * 22 17 16 38 38 H 1.09000 * 109.51066 * 62.45189 * 22 17 16 39 39 H 1.08004 * 120.49916 * 180.02562 * 24 23 16 40 40 H 1.08002 * 119.93724 * 180.02562 * 25 12 11 41 41 H 1.08003 * 120.05453 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.0957 1.6966 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0958 1.6965 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0492 -1.2347 0.2858 9 6 1.3539 -2.4038 -0.3750 10 6 0.2265 -2.3563 -1.2196 11 6 -0.4049 -3.5100 -1.5742 12 6 0.0703 -4.7422 -1.1097 13 6 -0.6156 -5.9921 -1.5029 14 6 -1.7432 -5.9624 -2.3327 15 7 -2.3235 -7.1008 -2.6654 16 6 -1.8592 -8.2588 -2.2158 17 7 -2.5003 -9.4268 -2.5828 18 6 -1.5667 -10.3588 -3.2316 19 6 -2.3024 -11.6588 -3.5670 20 8 -3.4322 -11.3622 -4.3921 21 6 -4.3626 -10.4577 -3.7909 22 6 -3.6477 -9.1454 -3.4578 23 7 -0.7978 -8.3285 -1.4240 24 6 -0.1579 -7.2358 -1.0500 25 6 1.1928 -4.7952 -0.2749 26 6 1.8280 -3.6469 0.0902 27 1 -0.4851 0.8400 0.0004 28 1 -0.1382 -1.4065 -1.5820 29 1 -1.2711 -3.4744 -2.2184 30 1 -2.1299 -5.0227 -2.6986 31 1 -1.1833 -9.9106 -4.1484 32 1 -0.7383 -10.5731 -2.5565 33 1 -2.6393 -12.1343 -2.6458 34 1 -1.6297 -12.3316 -4.0990 35 1 -4.7593 -10.8982 -2.8762 36 1 -5.1801 -10.2609 -4.4845 37 1 -4.3384 -8.4739 -2.9477 38 1 -3.2976 -8.6778 -4.3781 39 1 0.7062 -7.3001 -0.4052 40 1 1.5557 -5.7484 0.0804 41 1 2.6942 -3.6891 0.7340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240480760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:58 Heat of formation + Delta-G solvation = 25.002924 kcal Electronic energy + Delta-G solvation = -24224.863360 eV Core-core repulsion = 20683.255034 eV Total energy + Delta-G solvation = -3541.608325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.26208 -40.41629 -39.37225 -36.99797 -35.75476 -34.83902 -33.30224 -32.25752 -31.49645 -30.60816 -28.56149 -26.59097 -26.18836 -24.63021 -24.21869 -22.54150 -22.11466 -21.55616 -19.48649 -19.05659 -18.37960 -17.53648 -17.08790 -16.87662 -16.65012 -16.44503 -16.01446 -15.77193 -15.67931 -15.09026 -15.04580 -14.85265 -14.66701 -14.40968 -13.80403 -13.73135 -13.45369 -13.28381 -12.87203 -12.84344 -12.63785 -12.44782 -12.41235 -12.03242 -11.87404 -11.71815 -11.52612 -11.47201 -11.31916 -11.03854 -10.67104 -10.22726 -9.82282 -9.51478 -8.84889 -8.67913 -6.35177 -0.32067 0.11512 1.04534 1.18763 1.38570 1.49536 1.55442 2.06417 2.16340 2.57652 2.87302 2.91426 3.12774 3.61915 3.68128 3.74047 3.80000 3.95442 4.03939 4.05276 4.09931 4.15973 4.24875 4.39608 4.54387 4.56457 4.68557 4.74908 4.79220 4.85156 4.92807 4.99867 5.08548 5.22049 5.29275 5.36465 5.51691 5.64275 5.68955 5.87385 6.03966 6.09081 6.12849 6.22399 6.27546 6.59847 6.82434 6.94574 7.11730 8.19711 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.043460 B = 0.002399 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.120907 B =11670.034612 C =12140.233780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.479 4.479 8 H 0.084 0.916 9 C 0.089 3.911 10 C -0.194 4.194 11 C -0.079 4.079 12 C -0.192 4.192 13 C -0.113 4.113 14 C 0.139 3.861 15 N -0.546 5.546 16 C 0.435 3.565 17 N -0.464 5.464 18 C 0.031 3.969 19 C 0.069 3.931 20 O -0.398 6.398 21 C 0.066 3.934 22 C 0.037 3.963 23 N -0.526 5.526 24 C 0.145 3.855 25 C -0.062 4.062 26 C -0.243 4.243 27 H 0.293 0.707 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.177 0.823 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.187 0.813 40 H 0.126 0.874 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -13.982 -5.528 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.086 3.914 10 C -0.213 4.213 11 C -0.097 4.097 12 C -0.194 4.194 13 C -0.119 4.119 14 C -0.028 4.028 15 N -0.265 5.265 16 C 0.079 3.921 17 N -0.185 5.185 18 C -0.096 4.096 19 C -0.008 4.008 20 O -0.317 6.317 21 C -0.011 4.011 22 C -0.091 4.091 23 N -0.243 5.243 24 C -0.023 4.023 25 C -0.080 4.080 26 C -0.262 4.262 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.194 0.806 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.204 0.796 40 H 0.144 0.856 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.503 -15.069 -5.568 16.981 hybrid contribution 1.008 2.484 0.215 2.689 sum -4.495 -12.586 -5.353 14.396 Atomic orbital electron populations 1.69849 1.09135 1.31267 1.32987 1.26856 0.95509 1.04802 0.91080 0.85214 0.78834 0.75307 0.80249 1.18362 1.19157 1.18169 1.19966 0.98690 0.92438 1.39596 0.89822 1.18107 0.91507 0.93262 0.88503 1.20968 1.00508 0.97252 1.02583 1.20704 0.98337 0.92091 0.98567 1.17926 1.01428 0.90328 1.09755 1.20499 0.97013 0.95182 0.99182 1.23338 0.90884 0.96121 0.92471 1.68190 1.34115 0.98871 1.25287 1.21133 0.89364 0.89147 0.92410 1.58782 1.09454 1.08476 1.41803 1.22943 0.95483 0.93514 0.97656 1.22836 0.87737 0.93978 0.96261 1.87975 1.34464 1.65035 1.44234 1.22876 0.91552 0.86819 0.99804 1.22724 0.91884 0.99407 0.95077 1.67850 1.09252 1.33311 1.13893 1.23456 0.97704 0.85858 0.95295 1.20664 0.94097 0.97621 0.95645 1.20895 1.04827 0.92886 1.07637 0.89590 0.87774 0.86960 0.80623 0.94298 0.88040 0.91035 0.85425 0.91316 0.85610 0.89020 0.93436 0.79613 0.85613 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.60 10.96 21.83 0.24 -39.36 16 2 C 0.04 1.65 5.13 85.26 0.44 2.08 16 3 Si 0.98 35.42 29.60 68.60 2.03 37.45 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.48 -24.06 9.03 23.37 0.21 -23.85 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.09 4.50 5.57 -21.27 -0.12 4.38 16 10 C -0.19 -9.56 8.63 22.46 0.19 -9.37 16 11 C -0.08 -3.40 9.38 22.22 0.21 -3.19 16 12 C -0.19 -7.74 5.90 -19.87 -0.12 -7.86 16 13 C -0.11 -4.03 5.91 -19.84 -0.12 -4.15 16 14 C 0.14 4.70 10.70 85.10 0.91 5.61 16 15 N -0.55 -18.28 8.66 -197.00 -1.71 -19.99 16 16 C 0.43 14.18 7.17 261.49 1.87 16.06 16 17 N -0.46 -12.58 4.78 -707.85 -3.39 -15.97 16 18 C 0.03 0.69 5.49 86.31 0.47 1.16 16 19 C 0.07 1.16 7.01 72.01 0.50 1.67 16 20 O -0.40 -7.97 10.83 -148.98 -1.61 -9.58 16 21 C 0.07 1.16 7.01 72.02 0.50 1.66 16 22 C 0.04 0.85 4.79 86.32 0.41 1.26 16 23 N -0.53 -17.39 9.70 -196.99 -1.91 -19.31 16 24 C 0.14 4.71 10.70 85.10 0.91 5.62 16 25 C -0.06 -2.50 9.38 22.22 0.21 -2.29 16 26 C -0.24 -11.03 9.73 22.46 0.22 -10.81 16 27 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16 28 H 0.10 5.36 6.17 -2.91 -0.02 5.35 16 29 H 0.11 4.23 6.26 -2.91 -0.02 4.22 16 30 H 0.18 5.38 6.31 -2.91 -0.02 5.36 16 31 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 2.30 7.66 -2.39 -0.02 2.28 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 2.21 7.83 -2.39 -0.02 2.19 16 38 H 0.05 1.22 8.00 -2.39 -0.02 1.20 16 39 H 0.19 5.12 6.31 -2.91 -0.02 5.10 16 40 H 0.13 4.10 6.26 -2.91 -0.02 4.08 16 41 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -58.85 337.13 1.43 -57.42 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 1.06 Total: 31.35 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 6.72 Total: -22.01 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -6.76 Total: -94.62 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.61 Total: -9.58 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -58.85 1.43 -57.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240480760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.424 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds