Wall clock time and date at job start Fri Apr 10 2020 22:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46877 * 299.99812 * 3 2 1 6 6 H 1.48501 * 109.47144 * 59.99215 * 3 2 1 7 7 C 1.40038 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00085 * 163.90162 * 7 2 1 9 9 C 1.40852 * 120.00228 * 343.91223 * 7 2 1 10 10 C 1.40758 * 120.33099 * 333.41302 * 9 7 2 11 11 C 1.36407 * 119.98894 * 180.30342 * 10 9 7 12 12 C 1.38964 * 120.69830 * 359.71040 * 11 10 9 13 13 C 1.38028 * 120.68151 * 0.02562 * 12 11 10 14 14 C 1.39230 * 119.97832 * 359.97438 * 13 12 11 15 15 C 1.47787 * 120.34250 * 180.02562 * 14 13 12 16 16 C 1.40095 * 120.86916 * 310.00024 * 15 14 13 17 17 N 1.32028 * 119.00378 * 179.97438 * 16 15 14 18 18 C 1.32610 * 120.90390 * 0.02562 * 17 16 15 19 19 N 1.38210 * 119.03606 * 179.97438 * 18 17 16 20 20 C 1.47012 * 111.00114 * 303.63718 * 19 18 17 21 21 C 1.53103 * 109.25513 * 177.60691 * 20 19 18 22 22 O 1.43017 * 109.25947 * 56.84707 * 21 20 19 23 23 C 1.43012 * 113.73704 * 301.33176 * 22 21 20 24 24 C 1.47010 * 111.00006 * 180.02562 * 19 18 17 25 25 N 1.32608 * 121.92875 * 0.25551 * 18 17 16 26 26 C 1.32031 * 120.89797 * 359.47786 * 25 18 17 27 27 H 0.97000 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00508 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.65537 * 179.74083 * 11 10 9 30 30 H 1.08005 * 119.66023 * 180.02562 * 12 11 10 31 31 H 1.07996 * 120.01309 * 180.02562 * 13 12 11 32 32 H 1.08003 * 120.49574 * 359.97438 * 16 15 14 33 33 H 1.08995 * 109.50357 * 297.53769 * 20 19 18 34 34 H 1.08994 * 109.50804 * 57.67381 * 20 19 18 35 35 H 1.09006 * 109.50530 * 296.91328 * 21 20 19 36 36 H 1.09002 * 109.54127 * 176.80414 * 21 20 19 37 37 H 1.09003 * 109.50825 * 298.72946 * 23 22 21 38 38 H 1.09003 * 109.54165 * 178.62701 * 23 22 21 39 39 H 1.09008 * 109.50722 * 302.33248 * 24 19 18 40 40 H 1.08998 * 109.51146 * 62.45925 * 24 19 18 41 41 H 1.07999 * 120.49657 * 180.26003 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8830 2.3965 1.2124 7 6 2.0082 -1.2127 0.0005 8 1 3.0564 -1.2312 -0.2588 9 6 1.3454 -2.4086 0.3391 10 6 0.2189 -2.3826 1.1827 11 6 -0.4139 -3.5456 1.5110 12 6 0.0376 -4.7631 1.0161 13 6 1.1361 -4.8208 0.1825 14 6 1.8034 -3.6510 -0.1709 15 6 2.9802 -3.7034 -1.0635 16 6 4.0347 -4.5906 -0.8113 17 7 5.0680 -4.6069 -1.6330 18 6 5.1156 -3.7988 -2.6834 19 7 6.2162 -3.8479 -3.5181 20 6 7.4581 -3.6154 -2.7666 21 6 8.6531 -3.7374 -3.7160 22 8 8.4932 -2.8143 -4.7966 23 6 7.2940 -3.0124 -5.5503 24 6 6.0857 -2.8826 -4.6192 25 7 4.1408 -2.9413 -2.9534 26 6 3.0708 -2.8669 -2.1836 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1411 -1.4427 1.5741 29 1 -1.2752 -3.5198 2.1620 30 1 -0.4765 -5.6736 1.2866 31 1 1.4775 -5.7728 -0.1962 32 1 4.0029 -5.2512 0.0425 33 1 7.4390 -2.6159 -2.3322 34 1 7.5471 -4.3565 -1.9724 35 1 8.7034 -4.7528 -4.1091 36 1 9.5723 -3.5101 -3.1761 37 1 7.3048 -4.0067 -5.9968 38 1 7.2296 -2.2608 -6.3371 39 1 5.1725 -3.0887 -5.1777 40 1 6.0448 -1.8715 -4.2141 41 1 2.2788 -2.1691 -2.4119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240482923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:03 Heat of formation + Delta-G solvation = 38.462280 kcal Electronic energy + Delta-G solvation = -25139.761395 eV Core-core repulsion = 21598.736711 eV Total energy + Delta-G solvation = -3541.024684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82096 -39.22810 -37.67813 -35.68560 -33.92139 -33.24028 -31.99080 -31.24239 -29.78899 -28.72846 -26.80822 -25.40987 -24.73106 -23.24320 -22.82389 -21.03928 -20.69771 -19.98975 -17.87130 -17.45068 -16.99217 -16.08748 -15.79200 -15.48794 -15.19420 -15.15128 -14.96641 -14.46160 -14.20401 -13.84556 -13.64951 -13.17980 -12.93147 -12.82477 -12.61166 -12.35234 -11.84140 -11.59320 -11.50988 -11.43361 -11.24901 -11.10061 -10.82498 -10.68501 -10.53806 -10.25984 -10.09908 -9.84291 -9.58779 -9.40024 -9.39127 -8.81345 -8.11655 -7.59992 -7.32823 -6.95552 -4.57316 1.40050 1.71643 2.62338 2.83861 2.97011 3.02095 3.08554 3.34382 3.75078 3.77626 4.30670 4.43826 4.55997 4.85885 4.87550 5.03305 5.10025 5.17238 5.25450 5.32730 5.42622 5.49499 5.53520 5.70256 5.78563 5.91049 5.91833 5.98009 6.08663 6.26244 6.43307 6.48567 6.72924 6.80187 6.87053 6.99213 7.00874 7.14695 7.20125 7.35960 7.60658 7.72409 7.85238 7.91940 8.04787 8.39433 8.63438 8.65388 8.73157 9.94193 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004304 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.968728 B = 6504.355060 C = 7957.134642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.453 4.453 8 H 0.078 0.922 9 C 0.134 3.866 10 C -0.155 4.155 11 C -0.098 4.098 12 C -0.239 4.239 13 C -0.068 4.068 14 C -0.186 4.186 15 C -0.095 4.095 16 C 0.145 3.855 17 N -0.529 5.529 18 C 0.448 3.552 19 N -0.460 5.460 20 C 0.029 3.971 21 C 0.065 3.935 22 O -0.387 6.387 23 C 0.062 3.938 24 C 0.035 3.965 25 N -0.549 5.549 26 C 0.181 3.819 27 H 0.284 0.716 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 -3.295 -5.064 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.482 4.482 8 H 0.096 0.904 9 C 0.131 3.869 10 C -0.174 4.174 11 C -0.117 4.117 12 C -0.259 4.259 13 C -0.086 4.086 14 C -0.189 4.189 15 C -0.100 4.100 16 C -0.021 4.021 17 N -0.246 5.246 18 C 0.092 3.908 19 N -0.181 5.181 20 C -0.098 4.098 21 C -0.012 4.012 22 O -0.305 6.305 23 C -0.015 4.015 24 C -0.093 4.093 25 N -0.268 5.268 26 C 0.014 3.986 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.180 0.820 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.856 -3.489 -5.966 12.038 hybrid contribution -0.946 1.242 1.010 1.860 sum 8.910 -2.247 -4.956 10.440 Atomic orbital electron populations 1.69790 1.07574 1.29655 1.33602 1.25922 0.94724 1.01376 0.92055 0.86302 0.81107 0.80887 0.78903 1.18390 1.19614 1.19437 1.19544 0.97474 0.90932 1.40233 0.90372 1.17509 0.90521 0.90846 0.88048 1.21050 0.98848 0.97068 1.00446 1.20519 0.98526 0.93341 0.99320 1.20294 1.01668 0.96430 1.07470 1.20549 0.95562 0.95420 0.97068 1.18242 0.99987 0.94285 1.06361 1.20420 0.96204 0.97152 0.96228 1.23224 0.87103 0.95860 0.95940 1.67733 1.28071 1.23571 1.05211 1.20695 0.91616 0.89060 0.89428 1.58668 1.00486 1.49240 1.09726 1.22846 0.87900 1.02033 0.96983 1.22704 0.97072 0.93714 0.87682 1.87977 1.41443 1.56479 1.44636 1.22782 0.83222 1.02076 0.93426 1.22656 0.99796 0.94611 0.92234 1.68210 1.03958 1.20978 1.33632 1.23420 0.93054 0.94344 0.87753 0.90484 0.86303 0.89276 0.89192 0.89136 0.82019 0.93258 0.87970 0.91989 0.88023 0.92272 0.87982 0.88508 0.92119 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.53 10.99 55.55 0.61 -17.92 16 2 C 0.08 1.83 5.16 -17.32 -0.09 1.74 16 3 Si 0.90 17.82 29.59 -169.99 -5.03 12.79 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.45 -10.91 7.19 -37.92 -0.27 -11.19 16 8 H 0.08 1.91 6.66 -52.49 -0.35 1.56 16 9 C 0.13 3.22 5.56 -106.56 -0.59 2.63 16 10 C -0.16 -3.70 8.62 -39.29 -0.34 -4.04 16 11 C -0.10 -2.14 9.96 -39.97 -0.40 -2.54 16 12 C -0.24 -4.95 10.03 -39.39 -0.40 -5.35 16 13 C -0.07 -1.40 9.55 -39.29 -0.38 -1.78 16 14 C -0.19 -4.11 5.56 -104.22 -0.58 -4.69 16 15 C -0.09 -1.94 4.93 -104.60 -0.52 -2.46 16 16 C 0.14 2.71 10.86 -16.77 -0.18 2.53 16 17 N -0.53 -9.91 9.70 -13.60 -0.13 -10.04 16 18 C 0.45 8.32 7.17 -322.79 -2.31 6.01 16 19 N -0.46 -7.23 4.79 -175.09 -0.84 -8.07 16 20 C 0.03 0.40 5.49 -3.71 -0.02 0.38 16 21 C 0.07 0.71 7.01 37.21 0.26 0.98 16 22 O -0.39 -4.83 10.83 -35.23 -0.38 -5.22 16 23 C 0.06 0.69 7.01 37.21 0.26 0.95 16 24 C 0.03 0.48 4.79 -3.71 -0.02 0.47 16 25 N -0.55 -10.70 8.65 -13.60 -0.12 -10.82 16 26 C 0.18 3.70 9.33 -16.77 -0.16 3.55 16 27 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 28 H 0.12 2.93 6.25 -52.49 -0.33 2.60 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.16 2.65 8.06 -52.48 -0.42 2.23 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.38 7.66 -51.93 -0.40 0.98 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.36 7.83 -51.92 -0.41 0.95 16 40 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 41 H 0.17 3.60 7.40 -52.49 -0.39 3.21 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -26.53 339.12 -11.73 -38.26 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.23 Total: 8.71 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -5.72 Total: -12.81 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.48 Total: -46.85 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.53 -11.73 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240482923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.725 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds