Wall clock time and date at job start Fri Apr 10 2020 22:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46877 * 299.99812 * 3 2 1 6 6 H 1.48501 * 109.47144 * 59.99215 * 3 2 1 7 7 C 1.40038 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00085 * 163.90162 * 7 2 1 9 9 C 1.40852 * 120.00228 * 343.91223 * 7 2 1 10 10 C 1.40758 * 120.33099 * 333.41302 * 9 7 2 11 11 C 1.36407 * 119.98894 * 180.30342 * 10 9 7 12 12 C 1.38964 * 120.69830 * 359.71040 * 11 10 9 13 13 C 1.38028 * 120.68151 * 0.02562 * 12 11 10 14 14 C 1.39230 * 119.97832 * 359.97438 * 13 12 11 15 15 C 1.47787 * 120.34250 * 180.02562 * 14 13 12 16 16 C 1.40095 * 120.86916 * 310.00024 * 15 14 13 17 17 N 1.32028 * 119.00378 * 179.97438 * 16 15 14 18 18 C 1.32610 * 120.90390 * 0.02562 * 17 16 15 19 19 N 1.38210 * 119.03606 * 179.97438 * 18 17 16 20 20 C 1.47012 * 111.00114 * 303.63718 * 19 18 17 21 21 C 1.53103 * 109.25513 * 177.60691 * 20 19 18 22 22 O 1.43017 * 109.25947 * 56.84707 * 21 20 19 23 23 C 1.43012 * 113.73704 * 301.33176 * 22 21 20 24 24 C 1.47010 * 111.00006 * 180.02562 * 19 18 17 25 25 N 1.32608 * 121.92875 * 0.25551 * 18 17 16 26 26 C 1.32031 * 120.89797 * 359.47786 * 25 18 17 27 27 H 0.97000 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00508 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.65537 * 179.74083 * 11 10 9 30 30 H 1.08005 * 119.66023 * 180.02562 * 12 11 10 31 31 H 1.07996 * 120.01309 * 180.02562 * 13 12 11 32 32 H 1.08003 * 120.49574 * 359.97438 * 16 15 14 33 33 H 1.08995 * 109.50357 * 297.53769 * 20 19 18 34 34 H 1.08994 * 109.50804 * 57.67381 * 20 19 18 35 35 H 1.09006 * 109.50530 * 296.91328 * 21 20 19 36 36 H 1.09002 * 109.54127 * 176.80414 * 21 20 19 37 37 H 1.09003 * 109.50825 * 298.72946 * 23 22 21 38 38 H 1.09003 * 109.54165 * 178.62701 * 23 22 21 39 39 H 1.09008 * 109.50722 * 302.33248 * 24 19 18 40 40 H 1.08998 * 109.51146 * 62.45925 * 24 19 18 41 41 H 1.07999 * 120.49657 * 180.26003 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8830 2.3965 1.2124 7 6 2.0082 -1.2127 0.0005 8 1 3.0564 -1.2312 -0.2588 9 6 1.3454 -2.4086 0.3391 10 6 0.2189 -2.3826 1.1827 11 6 -0.4139 -3.5456 1.5110 12 6 0.0376 -4.7631 1.0161 13 6 1.1361 -4.8208 0.1825 14 6 1.8034 -3.6510 -0.1709 15 6 2.9802 -3.7034 -1.0635 16 6 4.0347 -4.5906 -0.8113 17 7 5.0680 -4.6069 -1.6330 18 6 5.1156 -3.7988 -2.6834 19 7 6.2162 -3.8479 -3.5181 20 6 7.4581 -3.6154 -2.7666 21 6 8.6531 -3.7374 -3.7160 22 8 8.4932 -2.8143 -4.7966 23 6 7.2940 -3.0124 -5.5503 24 6 6.0857 -2.8826 -4.6192 25 7 4.1408 -2.9413 -2.9534 26 6 3.0708 -2.8669 -2.1836 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1411 -1.4427 1.5741 29 1 -1.2752 -3.5198 2.1620 30 1 -0.4765 -5.6736 1.2866 31 1 1.4775 -5.7728 -0.1962 32 1 4.0029 -5.2512 0.0425 33 1 7.4390 -2.6159 -2.3322 34 1 7.5471 -4.3565 -1.9724 35 1 8.7034 -4.7528 -4.1091 36 1 9.5723 -3.5101 -3.1761 37 1 7.3048 -4.0067 -5.9968 38 1 7.2296 -2.2608 -6.3371 39 1 5.1725 -3.0887 -5.1777 40 1 6.0448 -1.8715 -4.2141 41 1 2.2788 -2.1691 -2.4119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240482923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:02 Heat of formation + Delta-G solvation = 25.729890 kcal Electronic energy + Delta-G solvation = -25140.313513 eV Core-core repulsion = 21598.736711 eV Total energy + Delta-G solvation = -3541.576802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.23916 -40.40663 -39.29895 -36.88891 -35.64236 -34.75601 -33.54148 -32.25148 -31.50908 -30.18817 -28.14988 -27.08101 -26.02282 -24.51230 -24.26745 -22.72093 -21.97989 -21.46969 -19.31022 -19.02847 -18.44586 -17.48825 -17.07461 -16.82810 -16.57954 -16.38038 -16.02827 -15.82330 -15.65294 -15.35214 -15.05553 -14.63307 -14.51611 -14.37680 -14.27501 -13.54502 -13.37398 -13.16469 -12.87144 -12.76377 -12.62127 -12.46842 -12.31864 -12.14358 -11.80967 -11.75368 -11.59402 -11.28518 -11.12788 -11.11698 -10.62131 -10.35550 -9.60190 -9.33819 -8.97605 -8.66138 -6.36658 -0.13339 0.16852 0.95897 1.14041 1.33359 1.43913 1.46575 2.05838 2.13464 2.69590 2.80794 2.87225 3.16041 3.64202 3.68101 3.77972 3.81190 3.97299 4.04877 4.15594 4.16841 4.25105 4.33621 4.50180 4.53143 4.62335 4.68148 4.75219 4.83566 4.90796 4.91828 5.01128 5.11836 5.24275 5.30220 5.42429 5.53077 5.62149 5.74127 5.95381 6.04296 6.09034 6.16933 6.24377 6.31873 6.64431 6.87265 6.98532 7.13978 8.24642 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004304 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.968728 B = 6504.355060 C = 7957.134642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.047 3.953 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.475 4.475 8 H 0.065 0.935 9 C 0.106 3.894 10 C -0.181 4.181 11 C -0.103 4.103 12 C -0.235 4.235 13 C -0.072 4.072 14 C -0.186 4.186 15 C -0.115 4.115 16 C 0.158 3.842 17 N -0.532 5.532 18 C 0.446 3.554 19 N -0.461 5.461 20 C 0.029 3.971 21 C 0.070 3.930 22 O -0.399 6.399 23 C 0.068 3.932 24 C 0.035 3.965 25 N -0.558 5.558 26 C 0.176 3.824 27 H 0.290 0.710 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.188 0.812 33 H 0.034 0.966 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -4.628 -5.600 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.104 3.896 10 C -0.201 4.201 11 C -0.122 4.122 12 C -0.254 4.254 13 C -0.090 4.090 14 C -0.189 4.189 15 C -0.120 4.120 16 C -0.009 4.009 17 N -0.249 5.249 18 C 0.091 3.909 19 N -0.182 5.182 20 C -0.097 4.097 21 C -0.007 4.007 22 O -0.317 6.317 23 C -0.009 4.009 24 C -0.093 4.093 25 N -0.277 5.277 26 C 0.010 3.990 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.205 0.795 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.327 -4.823 -6.513 13.928 hybrid contribution -1.355 1.496 1.133 2.315 sum 9.972 -3.327 -5.380 11.809 Atomic orbital electron populations 1.69822 1.08510 1.30607 1.34720 1.26501 0.95309 1.03644 0.91530 0.85435 0.79143 0.77667 0.79278 1.19456 1.18943 1.18507 1.19517 0.96944 0.91967 1.42000 0.91719 1.17794 0.91202 0.91851 0.88756 1.21030 0.99911 0.97361 1.01749 1.20801 0.98897 0.93118 0.99338 1.20683 1.01309 0.97094 1.06344 1.20878 0.95312 0.96039 0.96775 1.18467 1.00347 0.94196 1.05904 1.20380 0.96759 0.98448 0.96396 1.23573 0.86164 0.95000 0.96153 1.67860 1.27876 1.23765 1.05378 1.21202 0.92080 0.88275 0.89367 1.58806 1.00304 1.49382 1.09695 1.22960 0.87903 1.01126 0.97726 1.22837 0.96571 0.94264 0.86982 1.87973 1.41637 1.57150 1.44972 1.22868 0.81394 1.03711 0.92889 1.22735 1.01340 0.93142 0.92034 1.68239 1.04074 1.21589 1.33798 1.23247 0.93195 0.94253 0.88345 0.89881 0.88000 0.87162 0.86103 0.86412 0.79507 0.94771 0.87868 0.90685 0.85439 0.90945 0.85700 0.88992 0.93934 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.80 10.99 21.84 0.24 -39.56 16 2 C 0.05 2.25 5.16 85.28 0.44 2.69 16 3 Si 0.96 37.60 29.59 68.60 2.03 39.63 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.48 -23.86 7.19 23.35 0.17 -23.69 16 8 H 0.06 3.32 6.66 -2.91 -0.02 3.30 16 9 C 0.11 5.29 5.56 -21.12 -0.12 5.17 16 10 C -0.18 -8.86 8.62 22.46 0.19 -8.67 16 11 C -0.10 -4.41 9.96 22.02 0.22 -4.19 16 12 C -0.24 -9.24 10.03 22.39 0.22 -9.02 16 13 C -0.07 -2.86 9.55 22.46 0.21 -2.64 16 14 C -0.19 -8.27 5.56 -19.61 -0.11 -8.38 16 15 C -0.11 -4.71 4.93 -19.85 -0.10 -4.80 16 16 C 0.16 5.72 10.86 85.11 0.92 6.64 16 17 N -0.53 -19.29 9.70 -196.94 -1.91 -21.20 16 18 C 0.45 16.37 7.17 261.48 1.87 18.24 16 19 N -0.46 -13.96 4.79 -707.86 -3.39 -17.34 16 20 C 0.03 0.75 5.49 86.32 0.47 1.23 16 21 C 0.07 1.34 7.01 72.02 0.50 1.85 16 22 O -0.40 -8.94 10.83 -148.98 -1.61 -10.55 16 23 C 0.07 1.36 7.01 72.01 0.50 1.87 16 24 C 0.04 0.94 4.79 86.31 0.41 1.36 16 25 N -0.56 -22.03 8.65 -196.95 -1.70 -23.73 16 26 C 0.18 7.39 9.33 85.11 0.79 8.19 16 27 H 0.29 12.90 8.30 -92.71 -0.77 12.14 16 28 H 0.10 5.24 6.25 -2.91 -0.02 5.22 16 29 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 30 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 31 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.19 5.70 8.06 -2.91 -0.02 5.67 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 2.62 7.66 -2.39 -0.02 2.60 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 2.54 7.83 -2.38 -0.02 2.52 16 40 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 41 H 0.16 6.99 7.40 -2.91 -0.02 6.97 16 Total: -1.00 -57.80 339.12 1.32 -56.47 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 1.05 Total: 30.46 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 6.62 Total: -14.17 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -6.76 Total: -101.84 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.61 Total: -10.55 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -57.80 1.32 -56.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240482923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.203 kcal (2) G-P(sol) polarization free energy of solvation -57.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds