Wall clock time and date at job start Fri Apr 10 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48501 * 109.47489 * 275.37270 * 3 2 1 5 5 H 1.48497 * 109.47364 * 35.37636 * 3 2 1 6 6 H 1.48507 * 109.46941 * 155.37800 * 3 2 1 7 7 C 1.40033 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00012 * 346.12831 * 7 2 1 9 9 C 1.40843 * 119.99741 * 166.12795 * 7 2 1 10 10 C 1.41109 * 120.72571 * 323.94115 * 9 7 2 11 11 C 1.36877 * 118.40564 * 179.97438 * 10 9 7 12 12 C 1.38878 * 119.81415 * 0.28233 * 11 10 9 13 13 N 1.31731 * 121.51319 * 359.39025 * 12 11 10 14 14 C 1.32653 * 121.71021 * 0.64263 * 13 12 11 15 15 C 1.47653 * 119.99925 * 179.67496 * 14 13 12 16 16 C 1.40354 * 120.48224 * 315.52414 * 15 14 13 17 17 C 1.36890 * 118.48833 * 180.02562 * 16 15 14 18 18 C 1.39389 * 119.38903 * 359.97438 * 17 16 15 19 19 N 1.38649 * 119.53148 * 180.02562 * 18 17 16 20 20 C 1.47005 * 111.00179 * 303.64112 * 19 18 17 21 21 C 1.53101 * 109.25621 * 177.60914 * 20 19 18 22 22 O 1.43011 * 109.26190 * 56.84794 * 21 20 19 23 23 C 1.43023 * 113.73594 * 301.32859 * 22 21 20 24 24 C 1.47012 * 110.99724 * 179.97438 * 19 18 17 25 25 N 1.32566 * 120.93827 * 0.02562 * 18 17 16 26 26 C 1.31726 * 121.64051 * 359.70060 * 25 18 17 27 27 H 0.96996 * 119.99747 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.79760 * 359.95969 * 10 9 7 29 29 H 1.08004 * 120.09430 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.24041 * 179.72678 * 12 11 10 31 31 H 1.07989 * 120.75718 * 359.97438 * 16 15 14 32 32 H 1.07993 * 120.30595 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.50778 * 297.53563 * 20 19 18 34 34 H 1.08996 * 109.51131 * 57.66802 * 20 19 18 35 35 H 1.09000 * 109.50411 * 296.90752 * 21 20 19 36 36 H 1.09009 * 109.53953 * 176.80779 * 21 20 19 37 37 H 1.08996 * 109.50601 * 298.73863 * 23 22 21 38 38 H 1.09000 * 109.53977 * 178.62931 * 23 22 21 39 39 H 1.09001 * 109.51093 * 302.33062 * 24 19 18 40 40 H 1.09005 * 109.50859 * 62.42412 * 24 19 18 41 41 H 1.08000 * 119.74696 * 180.30863 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3760 2.1121 -1.3939 5 1 1.5008 2.6172 0.8105 6 1 3.5918 1.4101 0.5833 7 6 2.0082 -1.2127 -0.0005 8 1 1.4918 -2.1345 0.2233 9 6 3.3858 -1.2303 -0.2930 10 6 3.9303 -0.3511 -1.2530 11 6 5.2755 -0.4084 -1.4996 12 6 6.0649 -1.3221 -0.8136 13 7 5.5521 -2.1363 0.0860 14 6 4.2567 -2.1326 0.3719 15 6 3.7210 -3.0667 1.3822 16 6 4.1197 -4.4124 1.3899 17 6 3.5971 -5.2427 2.3445 18 6 2.6921 -4.7325 3.2738 19 7 2.1613 -5.5708 4.2423 20 6 1.4970 -6.7299 3.6291 21 6 0.9790 -7.6569 4.7320 22 8 0.1031 -6.9232 5.5921 23 6 0.7179 -5.7876 6.2068 24 6 1.2336 -4.8416 5.1192 25 7 2.3317 -3.4571 3.2448 26 6 2.8144 -2.6228 2.3469 27 1 -0.4849 0.8400 -0.0004 28 1 3.3007 0.3501 -1.7808 29 1 5.7211 0.2523 -2.2286 30 1 7.1245 -1.3624 -1.0187 31 1 4.8222 -4.7845 0.6590 32 1 3.8832 -6.2836 2.3773 33 1 0.6612 -6.3892 3.0178 34 1 2.2091 -7.2695 3.0047 35 1 1.8199 -8.0401 5.3100 36 1 0.4361 -8.4891 4.2837 37 1 1.5512 -6.1165 6.8277 38 1 -0.0135 -5.2672 6.8251 39 1 1.7537 -4.0031 5.5824 40 1 0.3940 -4.4697 4.5319 41 1 2.5035 -1.5886 2.3546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240991890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:07 Heat of formation + Delta-G solvation = 32.646952 kcal Electronic energy + Delta-G solvation = -25186.907622 eV Core-core repulsion = 21645.630767 eV Total energy + Delta-G solvation = -3541.276855 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48277 -39.16172 -38.29660 -35.58066 -34.13955 -32.44063 -31.57456 -31.47321 -30.95849 -29.03619 -26.78265 -25.60198 -24.45924 -22.99205 -22.41529 -21.64333 -20.82128 -20.20770 -17.71342 -17.52554 -16.48906 -16.41215 -15.87285 -15.47237 -15.28949 -14.98948 -14.97366 -14.62885 -14.26507 -14.04464 -13.67285 -13.26968 -13.08176 -12.73841 -12.68322 -12.40803 -12.21265 -12.13462 -11.69364 -11.53403 -11.44232 -11.25806 -11.03646 -10.74547 -10.49813 -10.18519 -9.93863 -9.61775 -9.46633 -9.26627 -9.01579 -8.60249 -8.38148 -8.06161 -7.34730 -7.15499 -4.72412 1.45095 1.90596 2.33054 2.54897 2.93453 3.04508 3.13494 3.58966 3.77402 3.79424 4.31937 4.42145 4.68509 4.90811 4.97407 5.06570 5.14739 5.22451 5.26414 5.30292 5.42129 5.54583 5.55655 5.59664 5.72392 5.75368 5.86555 5.90741 5.98456 6.09879 6.15464 6.35388 6.38106 6.49034 6.66607 6.75337 6.92822 6.98996 7.00568 7.04040 7.28087 7.38532 7.55770 7.62617 8.07200 8.25575 8.47851 8.55095 9.20959 9.84552 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.004071 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.080795 B = 6876.717828 C = 8007.730547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.085 3.915 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.431 4.431 8 H 0.099 0.901 9 C 0.063 3.937 10 C -0.195 4.195 11 C -0.125 4.125 12 C -0.031 4.031 13 N -0.446 5.446 14 C 0.042 3.958 15 C -0.053 4.053 16 C -0.047 4.047 17 C -0.188 4.188 18 C 0.281 3.719 19 N -0.475 5.475 20 C 0.021 3.979 21 C 0.065 3.935 22 O -0.387 6.387 23 C 0.061 3.939 24 C 0.031 3.969 25 N -0.518 5.518 26 C 0.154 3.846 27 H 0.289 0.711 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -7.955 6.132 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.460 4.460 8 H 0.117 0.883 9 C 0.058 3.942 10 C -0.220 4.220 11 C -0.145 4.145 12 C -0.190 4.190 13 N -0.153 5.153 14 C -0.098 4.098 15 C -0.057 4.057 16 C -0.073 4.073 17 C -0.210 4.210 18 C 0.051 3.949 19 N -0.194 5.194 20 C -0.106 4.106 21 C -0.012 4.012 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.097 4.097 25 N -0.231 5.231 26 C -0.005 4.005 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.783 -8.395 7.546 11.428 hybrid contribution 0.069 1.579 -1.854 2.436 sum 1.851 -6.817 5.692 9.072 Atomic orbital electron populations 1.69639 1.08011 1.30668 1.33184 1.26162 0.94791 1.01512 0.91186 0.86391 0.81447 0.79978 0.79420 1.19227 1.20955 1.16686 1.19385 0.91194 0.95976 1.39419 0.88327 1.18446 0.94121 0.91305 0.90308 1.21195 0.95180 1.04496 1.01131 1.21412 0.94767 0.98696 0.99602 1.21742 0.98680 0.98638 0.99915 1.67107 1.13715 1.20935 1.13530 1.19355 0.88446 1.02139 0.99900 1.19267 0.97907 0.92792 0.95747 1.21244 0.96887 0.92450 0.96765 1.21023 1.01343 1.00890 0.97765 1.19675 0.94735 0.89849 0.90687 1.59347 1.34123 1.08427 1.17540 1.22941 0.98524 0.91897 0.97253 1.22671 0.94116 0.93545 0.90846 1.87982 1.38384 1.41576 1.62558 1.22791 0.97973 0.86503 0.94343 1.22618 0.95553 0.96614 0.94873 1.67613 1.26064 1.03376 1.26043 1.22905 0.90981 0.99079 0.87508 0.89989 0.87099 0.87593 0.85430 0.85183 0.85642 0.92797 0.88934 0.92170 0.88159 0.92435 0.88179 0.88623 0.92185 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.67 13.93 55.55 0.77 -18.89 16 2 C 0.08 2.04 5.45 -17.32 -0.09 1.95 16 3 Si 0.90 19.14 24.62 -169.99 -4.18 14.95 16 4 H -0.27 -5.46 6.84 56.52 0.39 -5.07 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.24 -5.36 6.79 56.52 0.38 -4.98 16 7 C -0.43 -10.69 7.03 -37.92 -0.27 -10.95 16 8 H 0.10 2.64 7.17 -52.49 -0.38 2.26 16 9 C 0.06 1.51 4.96 -106.41 -0.53 0.98 16 10 C -0.19 -4.35 7.15 -38.99 -0.28 -4.63 16 11 C -0.12 -2.51 10.03 -39.84 -0.40 -2.91 16 12 C -0.03 -0.63 11.16 -17.36 -0.19 -0.82 16 13 N -0.45 -9.99 10.18 -9.18 -0.09 -10.08 16 14 C 0.04 0.97 6.43 -82.25 -0.53 0.44 16 15 C -0.05 -1.14 5.26 -104.74 -0.55 -1.69 16 16 C -0.05 -0.88 9.77 -39.27 -0.38 -1.26 16 17 C -0.19 -3.13 9.15 -39.64 -0.36 -3.49 16 18 C 0.28 4.97 6.40 -155.13 -0.99 3.97 16 19 N -0.48 -7.07 4.74 -172.88 -0.82 -7.89 16 20 C 0.02 0.26 5.39 -3.71 -0.02 0.24 16 21 C 0.07 0.68 7.01 37.21 0.26 0.94 16 22 O -0.39 -4.88 10.83 -35.23 -0.38 -5.26 16 23 C 0.06 0.70 7.01 37.21 0.26 0.96 16 24 C 0.03 0.44 4.81 -3.71 -0.02 0.42 16 25 N -0.52 -10.27 8.67 -12.07 -0.10 -10.37 16 26 C 0.15 3.26 9.23 -17.08 -0.16 3.10 16 27 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 28 H 0.11 2.42 5.36 -52.48 -0.28 2.13 16 29 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.13 1.71 7.16 -52.49 -0.38 1.33 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.00 6.80 -51.93 -0.35 0.65 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.40 7.85 -51.93 -0.41 0.99 16 40 H 0.06 0.96 8.02 -51.93 -0.42 0.55 16 41 H 0.17 3.65 6.84 -52.49 -0.36 3.29 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -27.63 332.32 -9.18 -36.80 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.12 Total: 8.49 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -4.25 Total: -12.76 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.24 Total: -47.23 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.18 Total: 14.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.63 -9.18 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240991890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.448 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds