Wall clock time and date at job start Fri Apr 10 2020 22:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48501 * 109.47489 * 275.37270 * 3 2 1 5 5 H 1.48497 * 109.47364 * 35.37636 * 3 2 1 6 6 H 1.48507 * 109.46941 * 155.37800 * 3 2 1 7 7 C 1.40033 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00012 * 346.12831 * 7 2 1 9 9 C 1.40843 * 119.99741 * 166.12795 * 7 2 1 10 10 C 1.41109 * 120.72571 * 323.94115 * 9 7 2 11 11 C 1.36877 * 118.40564 * 179.97438 * 10 9 7 12 12 C 1.38878 * 119.81415 * 0.28233 * 11 10 9 13 13 N 1.31731 * 121.51319 * 359.39025 * 12 11 10 14 14 C 1.32653 * 121.71021 * 0.64263 * 13 12 11 15 15 C 1.47653 * 119.99925 * 179.67496 * 14 13 12 16 16 C 1.40354 * 120.48224 * 315.52414 * 15 14 13 17 17 C 1.36890 * 118.48833 * 180.02562 * 16 15 14 18 18 C 1.39389 * 119.38903 * 359.97438 * 17 16 15 19 19 N 1.38649 * 119.53148 * 180.02562 * 18 17 16 20 20 C 1.47005 * 111.00179 * 303.64112 * 19 18 17 21 21 C 1.53101 * 109.25621 * 177.60914 * 20 19 18 22 22 O 1.43011 * 109.26190 * 56.84794 * 21 20 19 23 23 C 1.43023 * 113.73594 * 301.32859 * 22 21 20 24 24 C 1.47012 * 110.99724 * 179.97438 * 19 18 17 25 25 N 1.32566 * 120.93827 * 0.02562 * 18 17 16 26 26 C 1.31726 * 121.64051 * 359.70060 * 25 18 17 27 27 H 0.96996 * 119.99747 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.79760 * 359.95969 * 10 9 7 29 29 H 1.08004 * 120.09430 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.24041 * 179.72678 * 12 11 10 31 31 H 1.07989 * 120.75718 * 359.97438 * 16 15 14 32 32 H 1.07993 * 120.30595 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.50778 * 297.53563 * 20 19 18 34 34 H 1.08996 * 109.51131 * 57.66802 * 20 19 18 35 35 H 1.09000 * 109.50411 * 296.90752 * 21 20 19 36 36 H 1.09009 * 109.53953 * 176.80779 * 21 20 19 37 37 H 1.08996 * 109.50601 * 298.73863 * 23 22 21 38 38 H 1.09000 * 109.53977 * 178.62931 * 23 22 21 39 39 H 1.09001 * 109.51093 * 302.33062 * 24 19 18 40 40 H 1.09005 * 109.50859 * 62.42412 * 24 19 18 41 41 H 1.08000 * 119.74696 * 180.30863 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3760 2.1121 -1.3939 5 1 1.5008 2.6172 0.8105 6 1 3.5918 1.4101 0.5833 7 6 2.0082 -1.2127 -0.0005 8 1 1.4918 -2.1345 0.2233 9 6 3.3858 -1.2303 -0.2930 10 6 3.9303 -0.3511 -1.2530 11 6 5.2755 -0.4084 -1.4996 12 6 6.0649 -1.3221 -0.8136 13 7 5.5521 -2.1363 0.0860 14 6 4.2567 -2.1326 0.3719 15 6 3.7210 -3.0667 1.3822 16 6 4.1197 -4.4124 1.3899 17 6 3.5971 -5.2427 2.3445 18 6 2.6921 -4.7325 3.2738 19 7 2.1613 -5.5708 4.2423 20 6 1.4970 -6.7299 3.6291 21 6 0.9790 -7.6569 4.7320 22 8 0.1031 -6.9232 5.5921 23 6 0.7179 -5.7876 6.2068 24 6 1.2336 -4.8416 5.1192 25 7 2.3317 -3.4571 3.2448 26 6 2.8144 -2.6228 2.3469 27 1 -0.4849 0.8400 -0.0004 28 1 3.3007 0.3501 -1.7808 29 1 5.7211 0.2523 -2.2286 30 1 7.1245 -1.3624 -1.0187 31 1 4.8222 -4.7845 0.6590 32 1 3.8832 -6.2836 2.3773 33 1 0.6612 -6.3892 3.0178 34 1 2.2091 -7.2695 3.0047 35 1 1.8199 -8.0401 5.3100 36 1 0.4361 -8.4891 4.2837 37 1 1.5512 -6.1165 6.8277 38 1 -0.0135 -5.2672 6.8251 39 1 1.7537 -4.0031 5.5824 40 1 0.3940 -4.4697 4.5319 41 1 2.5035 -1.5886 2.3546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240991890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:06 Heat of formation + Delta-G solvation = 14.948397 kcal Electronic energy + Delta-G solvation = -25187.675089 eV Core-core repulsion = 21645.630767 eV Total energy + Delta-G solvation = -3542.044322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.82283 -40.62437 -39.68326 -36.78744 -35.91397 -33.94180 -33.22744 -32.98335 -32.08139 -30.48957 -28.12838 -27.24844 -25.60887 -24.48036 -23.86184 -23.22321 -22.30938 -21.43345 -19.49418 -18.81086 -18.07409 -17.73229 -17.18644 -16.93228 -16.46052 -16.39339 -16.01264 -15.97772 -15.62390 -15.42449 -15.25396 -14.85998 -14.62086 -14.27318 -14.17274 -13.96957 -13.79918 -13.35535 -13.28053 -12.98150 -12.74204 -12.54024 -12.38125 -12.15573 -11.91819 -11.67839 -11.38504 -11.17992 -10.86710 -10.53481 -10.53117 -10.26083 -10.07688 -9.68957 -8.95310 -8.87298 -6.56977 -0.10053 0.40487 0.65635 0.84840 1.21466 1.34385 1.42484 2.03963 2.36584 2.58723 2.87199 2.91689 3.40521 3.46056 3.70404 3.83970 3.94524 4.05512 4.12725 4.15904 4.19827 4.25495 4.29163 4.31740 4.42908 4.51350 4.57556 4.69382 4.70893 4.79433 4.83302 4.91279 4.95840 4.97286 5.05599 5.23676 5.39322 5.45347 5.56980 5.64376 5.72570 5.89068 6.10322 6.12541 6.21144 6.50297 6.64290 7.04418 7.49351 8.11055 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.004071 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.080795 B = 6876.717828 C = 8007.730547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.053 3.947 3 Si 0.953 3.047 4 H -0.248 1.248 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.452 4.452 8 H 0.060 0.940 9 C 0.044 3.956 10 C -0.204 4.204 11 C -0.123 4.123 12 C -0.019 4.019 13 N -0.462 5.462 14 C 0.034 3.966 15 C -0.082 4.082 16 C -0.045 4.045 17 C -0.176 4.176 18 C 0.280 3.720 19 N -0.471 5.471 20 C 0.017 3.983 21 C 0.067 3.933 22 O -0.402 6.402 23 C 0.069 3.931 24 C 0.032 3.968 25 N -0.536 5.536 26 C 0.140 3.860 27 H 0.296 0.704 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.033 0.967 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -9.279 6.123 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.163 4.163 3 Si 0.775 3.225 4 H -0.173 1.173 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.230 4.230 11 C -0.143 4.143 12 C -0.179 4.179 13 N -0.170 5.170 14 C -0.105 4.105 15 C -0.085 4.085 16 C -0.072 4.072 17 C -0.198 4.198 18 C 0.048 3.952 19 N -0.189 5.189 20 C -0.109 4.109 21 C -0.010 4.010 22 O -0.321 6.321 23 C -0.008 4.008 24 C -0.096 4.096 25 N -0.250 5.250 26 C -0.017 4.017 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.167 0.833 30 H 0.185 0.815 31 H 0.162 0.838 32 H 0.184 0.816 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.095 -9.732 7.538 12.974 hybrid contribution -0.470 1.809 -1.818 2.608 sum 3.625 -7.923 5.720 10.423 Atomic orbital electron populations 1.69672 1.09085 1.31638 1.35850 1.26731 0.95262 1.03678 0.90644 0.85642 0.79539 0.77068 0.80225 1.17295 1.20107 1.18094 1.19123 0.91961 0.95049 1.41982 0.92178 1.18610 0.93840 0.92492 0.91084 1.21416 0.96616 1.04232 1.00764 1.21846 0.93690 0.98865 0.99866 1.22546 1.00560 0.96859 0.97920 1.67217 1.13135 1.22048 1.14562 1.19624 0.88800 1.02121 0.99932 1.19342 0.99040 0.94122 0.96043 1.21418 0.96873 0.91462 0.97400 1.21364 0.99867 1.02402 0.96137 1.20155 0.94572 0.89392 0.91053 1.59452 1.34374 1.08402 1.16696 1.23133 0.98271 0.91224 0.98240 1.22872 0.94810 0.93223 0.90088 1.87971 1.39491 1.41744 1.62911 1.22819 0.98915 0.85818 0.93275 1.22623 0.94351 0.97361 0.95258 1.67570 1.26560 1.04640 1.26245 1.22571 0.91862 0.98588 0.88695 0.89338 0.86717 0.83284 0.81524 0.83798 0.81616 0.94860 0.86701 0.90433 0.85606 0.90823 0.86530 0.89601 0.94916 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.00 13.93 21.84 0.30 -43.70 16 2 C 0.05 2.69 5.45 85.28 0.46 3.16 16 3 Si 0.95 40.13 24.62 68.60 1.69 41.82 16 4 H -0.25 -9.63 6.84 99.48 0.68 -8.95 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.26 -11.24 6.79 99.48 0.68 -10.56 16 7 C -0.45 -23.87 7.03 23.34 0.16 -23.70 16 8 H 0.06 3.53 7.17 -2.91 -0.02 3.51 16 9 C 0.04 2.17 4.96 -21.02 -0.10 2.07 16 10 C -0.20 -8.98 7.15 22.66 0.16 -8.82 16 11 C -0.12 -4.58 10.03 22.10 0.22 -4.36 16 12 C -0.02 -0.73 11.16 84.86 0.95 0.22 16 13 N -0.46 -20.08 10.18 -182.97 -1.86 -21.95 16 14 C 0.03 1.61 6.43 42.43 0.27 1.88 16 15 C -0.08 -3.60 5.26 -19.94 -0.10 -3.70 16 16 C -0.05 -1.66 9.77 22.47 0.22 -1.44 16 17 C -0.18 -5.59 9.15 22.23 0.20 -5.38 16 18 C 0.28 9.87 6.40 133.20 0.85 10.72 16 19 N -0.47 -13.52 4.74 -700.87 -3.32 -16.84 16 20 C 0.02 0.40 5.39 86.32 0.47 0.86 16 21 C 0.07 1.20 7.01 72.02 0.50 1.71 16 22 O -0.40 -9.34 10.83 -148.98 -1.61 -10.96 16 23 C 0.07 1.47 7.01 72.01 0.50 1.97 16 24 C 0.03 0.90 4.81 86.31 0.42 1.32 16 25 N -0.54 -22.36 8.67 -192.12 -1.67 -24.03 16 26 C 0.14 6.37 9.23 85.05 0.79 7.16 16 27 H 0.30 14.00 8.29 -92.71 -0.77 13.23 16 28 H 0.12 4.88 5.36 -2.91 -0.02 4.87 16 29 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 30 H 0.17 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.14 4.82 8.06 -2.92 -0.02 4.79 16 32 H 0.17 3.88 7.16 -2.91 -0.02 3.85 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 2.11 6.80 -2.39 -0.02 2.09 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 40 H 0.03 1.10 8.02 -2.38 -0.02 1.08 16 41 H 0.14 6.92 6.84 -2.91 -0.02 6.90 16 Total: -1.00 -63.26 332.32 0.50 -62.76 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.99 Total: 29.23 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 5.97 Total: -16.34 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -6.55 Total: -106.51 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.61 Total: -10.96 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.69 Total: 41.82 kcal Total: -63.26 0.50 -62.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240991890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.705 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds