Wall clock time and date at job start Fri Apr 10 2020 22:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48508 * 109.47092 * 270.00066 * 3 2 1 5 5 H 1.48503 * 109.47414 * 29.99646 * 3 2 1 6 6 H 1.48495 * 109.47356 * 149.99924 * 3 2 1 7 7 C 1.40039 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00378 * 163.15690 * 7 2 1 9 9 C 1.41536 * 119.99987 * 343.15765 * 7 2 1 10 10 C 1.41162 * 120.98156 * 336.11905 * 9 7 2 11 11 C 1.37708 * 119.08222 * 180.02562 * 10 9 7 12 12 N 1.31942 * 121.16431 * 359.97438 * 11 10 9 13 13 C 1.32823 * 122.19811 * 0.02562 * 12 11 10 14 14 C 1.48280 * 119.61773 * 179.72493 * 13 12 11 15 15 C 1.40021 * 120.45915 * 4.72210 * 14 13 12 16 16 C 1.38021 * 118.40336 * 179.77943 * 15 14 13 17 17 C 1.39268 * 119.22314 * 0.49782 * 16 15 14 18 18 N 1.38843 * 119.57580 * 179.76582 * 17 16 15 19 19 C 1.47012 * 110.99804 * 303.61512 * 18 17 16 20 20 C 1.53099 * 109.25605 * 177.60870 * 19 18 17 21 21 O 1.43008 * 109.25908 * 56.84882 * 20 19 18 22 22 C 1.43022 * 113.73715 * 301.32647 * 21 20 19 23 23 C 1.47015 * 110.99910 * 179.97438 * 18 17 16 24 24 N 1.32462 * 120.85235 * 359.74196 * 17 16 15 25 25 C 1.31791 * 121.75158 * 0.02562 * 24 17 16 26 26 C 1.38952 * 120.76224 * 0.02562 * 13 12 11 27 27 H 0.97008 * 119.99895 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.45729 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.42072 * 180.02562 * 11 10 9 30 30 H 1.08005 * 120.79647 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.38951 * 180.23868 * 16 15 14 32 32 H 1.09007 * 109.50809 * 297.54060 * 19 18 17 33 33 H 1.09002 * 109.51243 * 57.66795 * 19 18 17 34 34 H 1.08995 * 109.50394 * 296.90906 * 20 19 18 35 35 H 1.09006 * 109.54018 * 176.80473 * 20 19 18 36 36 H 1.08996 * 109.50644 * 298.73826 * 22 21 20 37 37 H 1.08996 * 109.54230 * 178.63169 * 22 21 20 38 38 H 1.08997 * 109.50185 * 302.32380 * 23 18 17 39 39 H 1.08991 * 109.50843 * 62.41181 * 23 18 17 40 40 H 1.08005 * 119.65670 * 179.97438 * 25 24 17 41 41 H 1.08002 * 120.62230 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4002 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2128 0.0005 8 1 3.0528 -1.2330 -0.2704 9 6 1.3454 -2.4121 0.3562 10 6 0.1906 -2.3913 1.1678 11 6 -0.4223 -3.5816 1.4904 12 7 0.0510 -4.7334 1.0543 13 6 1.1335 -4.8094 0.2884 14 6 1.6191 -6.1352 -0.1645 15 6 0.8909 -7.2952 0.1264 16 6 1.3797 -8.5064 -0.3197 17 6 2.5772 -8.5363 -1.0301 18 7 3.0781 -9.7512 -1.4781 19 6 3.2500 -10.6936 -0.3630 20 6 3.7460 -12.0356 -0.9079 21 8 4.9602 -11.8298 -1.6348 22 6 4.8288 -10.9178 -2.7287 23 6 4.3438 -9.5644 -2.2023 24 7 3.2443 -7.4205 -1.2843 25 6 2.8085 -6.2444 -0.8795 26 6 1.8197 -3.6613 -0.0881 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2063 -1.4550 1.5313 29 1 -1.3063 -3.5720 2.1106 30 1 -0.0331 -7.2430 0.6832 31 1 0.8420 -9.4207 -0.1167 32 1 3.9799 -10.2947 0.3415 33 1 2.2953 -10.8367 0.1432 34 1 2.9922 -12.4602 -1.5709 35 1 3.9292 -12.7202 -0.0796 36 1 4.1065 -11.3099 -3.4447 37 1 5.7949 -10.7932 -3.2175 38 1 4.1873 -8.8834 -3.0388 39 1 5.0909 -9.1467 -1.5276 40 1 3.3799 -5.3561 -1.1052 41 1 2.6999 -3.7257 -0.7106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240992371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:11 Heat of formation + Delta-G solvation = 29.126316 kcal Electronic energy + Delta-G solvation = -24280.010795 eV Core-core repulsion = 20738.581274 eV Total energy + Delta-G solvation = -3541.429522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70409 -39.18876 -38.15719 -35.79976 -34.25194 -32.48396 -31.56015 -31.21389 -30.72892 -28.70511 -26.65513 -26.00041 -24.72590 -23.07551 -22.82831 -21.18871 -20.98768 -20.32060 -17.89924 -17.56941 -16.58944 -16.06322 -15.73781 -15.54985 -15.28574 -15.15870 -14.97353 -14.55839 -14.52152 -13.99815 -13.65077 -13.45829 -13.30001 -12.87660 -12.61856 -12.42151 -12.34881 -11.83971 -11.67598 -11.59019 -11.49448 -11.20187 -11.01287 -10.90160 -10.43411 -10.22986 -10.02541 -9.72664 -9.52356 -9.47830 -9.22952 -8.39784 -8.17465 -8.11734 -7.18977 -6.94356 -4.70149 1.15306 1.59639 2.65804 2.77666 2.96881 3.00777 3.14764 3.39031 3.62297 3.78064 4.11850 4.46000 4.59599 4.68931 4.78573 4.88466 5.00051 5.08360 5.09596 5.22856 5.30991 5.38851 5.40456 5.43088 5.55562 5.57419 5.73520 5.79999 5.88070 6.10692 6.19775 6.44593 6.52465 6.68399 6.71946 6.78828 6.85558 6.93526 7.00696 7.17677 7.27197 7.34668 7.73955 7.96066 8.21435 8.33638 8.61565 8.63328 9.43477 9.96636 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.002639 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.068253 B =10606.509885 C =11445.373673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.127 3.873 10 C -0.208 4.208 11 C 0.088 3.912 12 N -0.566 5.566 13 C 0.156 3.844 14 C -0.080 4.080 15 C -0.031 4.031 16 C -0.187 4.187 17 C 0.288 3.712 18 N -0.476 5.476 19 C 0.021 3.979 20 C 0.065 3.935 21 O -0.386 6.386 22 C 0.060 3.940 23 C 0.031 3.969 24 N -0.518 5.518 25 C 0.130 3.870 26 C -0.252 4.252 27 H 0.285 0.715 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.162 0.838 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -15.142 -1.688 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.064 4.064 12 N -0.281 5.281 13 C 0.022 3.978 14 C -0.084 4.084 15 C -0.057 4.057 16 C -0.210 4.210 17 C 0.057 3.943 18 N -0.195 5.195 19 C -0.106 4.106 20 C -0.012 4.012 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.096 4.096 24 N -0.231 5.231 25 C -0.028 4.028 26 C -0.275 4.275 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.179 0.821 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.671 -16.165 -2.205 16.970 hybrid contribution 0.026 2.315 0.540 2.378 sum 4.697 -13.850 -1.665 14.719 Atomic orbital electron populations 1.69762 1.07777 1.29778 1.33548 1.25987 0.94785 1.01673 0.91817 0.86236 0.80646 0.80047 0.79459 1.19250 1.19888 1.18247 1.19612 0.97944 0.90753 1.40146 0.89893 1.17756 0.90735 0.91992 0.87611 1.22272 1.00221 0.98220 1.02307 1.21941 0.98079 0.88388 0.97970 1.67246 1.14570 1.29342 1.16916 1.18880 0.92877 0.90058 0.95959 1.19713 0.95803 0.93484 0.99418 1.21616 0.99027 0.90410 0.94689 1.21427 0.97034 0.99170 1.03346 1.19687 0.92195 0.88782 0.93660 1.59389 1.28190 1.08151 1.23735 1.22957 1.02498 0.93140 0.91973 1.22683 0.87081 0.95124 0.96360 1.87988 1.32902 1.64487 1.45090 1.22795 1.01982 0.88128 0.88768 1.22632 0.89410 0.97773 0.99830 1.67511 1.33444 0.98526 1.23645 1.22707 0.93270 0.94238 0.92621 1.21830 1.04354 0.92916 1.08413 0.90437 0.85499 0.85918 0.83716 0.85141 0.92827 0.88778 0.92023 0.88009 0.92283 0.88064 0.88555 0.92301 0.82147 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.17 10.92 55.55 0.61 -18.57 16 2 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 3 Si 0.91 17.62 29.59 -169.99 -5.03 12.59 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.45 -11.40 9.12 -37.65 -0.34 -11.74 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.24 5.60 -106.55 -0.60 2.65 16 10 C -0.21 -5.18 8.79 -38.67 -0.34 -5.52 16 11 C 0.09 2.04 11.15 -17.70 -0.20 1.84 16 12 N -0.57 -13.12 9.48 -9.95 -0.09 -13.21 16 13 C 0.16 3.53 6.72 -83.04 -0.56 2.98 16 14 C -0.08 -1.55 5.89 -104.74 -0.62 -2.17 16 15 C -0.03 -0.53 9.68 -38.99 -0.38 -0.91 16 16 C -0.19 -2.76 9.20 -39.28 -0.36 -3.12 16 17 C 0.29 4.40 6.40 -155.07 -0.99 3.41 16 18 N -0.48 -6.07 4.75 -172.88 -0.82 -6.90 16 19 C 0.02 0.22 5.39 -3.71 -0.02 0.20 16 20 C 0.06 0.56 7.01 37.21 0.26 0.82 16 21 O -0.39 -4.18 10.83 -35.23 -0.38 -4.56 16 22 C 0.06 0.58 7.01 37.21 0.26 0.84 16 23 C 0.03 0.37 4.82 -3.71 -0.02 0.35 16 24 N -0.52 -8.71 8.67 -12.17 -0.11 -8.82 16 25 C 0.13 2.32 10.57 -17.21 -0.18 2.14 16 26 C -0.25 -5.94 9.25 -38.34 -0.35 -6.29 16 27 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 28 H 0.13 3.20 6.20 -52.49 -0.33 2.88 16 29 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 30 H 0.15 2.42 7.63 -52.48 -0.40 2.02 16 31 H 0.13 1.54 7.17 -52.49 -0.38 1.17 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.09 0.83 6.81 -51.93 -0.35 0.48 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.20 7.85 -51.93 -0.41 0.79 16 39 H 0.06 0.77 8.02 -51.93 -0.42 0.36 16 40 H 0.16 2.71 6.21 -52.48 -0.33 2.38 16 41 H 0.10 2.25 6.23 -52.49 -0.33 1.92 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -28.37 338.45 -10.27 -38.64 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.02 Total: 8.50 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -4.53 Total: -12.78 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.41 Total: -47.49 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.38 Total: -4.56 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.37 -10.27 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240992371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.765 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds