Wall clock time and date at job start Fri Apr 10 2020 22:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48508 * 109.47092 * 270.00066 * 3 2 1 5 5 H 1.48503 * 109.47414 * 29.99646 * 3 2 1 6 6 H 1.48495 * 109.47356 * 149.99924 * 3 2 1 7 7 C 1.40039 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00378 * 163.15690 * 7 2 1 9 9 C 1.41536 * 119.99987 * 343.15765 * 7 2 1 10 10 C 1.41162 * 120.98156 * 336.11905 * 9 7 2 11 11 C 1.37708 * 119.08222 * 180.02562 * 10 9 7 12 12 N 1.31942 * 121.16431 * 359.97438 * 11 10 9 13 13 C 1.32823 * 122.19811 * 0.02562 * 12 11 10 14 14 C 1.48280 * 119.61773 * 179.72493 * 13 12 11 15 15 C 1.40021 * 120.45915 * 4.72210 * 14 13 12 16 16 C 1.38021 * 118.40336 * 179.77943 * 15 14 13 17 17 C 1.39268 * 119.22314 * 0.49782 * 16 15 14 18 18 N 1.38843 * 119.57580 * 179.76582 * 17 16 15 19 19 C 1.47012 * 110.99804 * 303.61512 * 18 17 16 20 20 C 1.53099 * 109.25605 * 177.60870 * 19 18 17 21 21 O 1.43008 * 109.25908 * 56.84882 * 20 19 18 22 22 C 1.43022 * 113.73715 * 301.32647 * 21 20 19 23 23 C 1.47015 * 110.99910 * 179.97438 * 18 17 16 24 24 N 1.32462 * 120.85235 * 359.74196 * 17 16 15 25 25 C 1.31791 * 121.75158 * 0.02562 * 24 17 16 26 26 C 1.38952 * 120.76224 * 0.02562 * 13 12 11 27 27 H 0.97008 * 119.99895 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.45729 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.42072 * 180.02562 * 11 10 9 30 30 H 1.08005 * 120.79647 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.38951 * 180.23868 * 16 15 14 32 32 H 1.09007 * 109.50809 * 297.54060 * 19 18 17 33 33 H 1.09002 * 109.51243 * 57.66795 * 19 18 17 34 34 H 1.08995 * 109.50394 * 296.90906 * 20 19 18 35 35 H 1.09006 * 109.54018 * 176.80473 * 20 19 18 36 36 H 1.08996 * 109.50644 * 298.73826 * 22 21 20 37 37 H 1.08996 * 109.54230 * 178.63169 * 22 21 20 38 38 H 1.08997 * 109.50185 * 302.32380 * 23 18 17 39 39 H 1.08991 * 109.50843 * 62.41181 * 23 18 17 40 40 H 1.08005 * 119.65670 * 179.97438 * 25 24 17 41 41 H 1.08002 * 120.62230 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4002 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2128 0.0005 8 1 3.0528 -1.2330 -0.2704 9 6 1.3454 -2.4121 0.3562 10 6 0.1906 -2.3913 1.1678 11 6 -0.4223 -3.5816 1.4904 12 7 0.0510 -4.7334 1.0543 13 6 1.1335 -4.8094 0.2884 14 6 1.6191 -6.1352 -0.1645 15 6 0.8909 -7.2952 0.1264 16 6 1.3797 -8.5064 -0.3197 17 6 2.5772 -8.5363 -1.0301 18 7 3.0781 -9.7512 -1.4781 19 6 3.2500 -10.6936 -0.3630 20 6 3.7460 -12.0356 -0.9079 21 8 4.9602 -11.8298 -1.6348 22 6 4.8288 -10.9178 -2.7287 23 6 4.3438 -9.5644 -2.2023 24 7 3.2443 -7.4205 -1.2843 25 6 2.8085 -6.2444 -0.8795 26 6 1.8197 -3.6613 -0.0881 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2063 -1.4550 1.5313 29 1 -1.3063 -3.5720 2.1106 30 1 -0.0331 -7.2430 0.6832 31 1 0.8420 -9.4207 -0.1167 32 1 3.9799 -10.2947 0.3415 33 1 2.2953 -10.8367 0.1432 34 1 2.9922 -12.4602 -1.5709 35 1 3.9292 -12.7202 -0.0796 36 1 4.1065 -11.3099 -3.4447 37 1 5.7949 -10.7932 -3.2175 38 1 4.1873 -8.8834 -3.0388 39 1 5.0909 -9.1467 -1.5276 40 1 3.3799 -5.3561 -1.1052 41 1 2.6999 -3.7257 -0.7106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240992371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:10 Heat of formation + Delta-G solvation = 12.720673 kcal Electronic energy + Delta-G solvation = -24280.722198 eV Core-core repulsion = 20738.581274 eV Total energy + Delta-G solvation = -3542.140924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86478 -40.45583 -39.64186 -36.87711 -36.01626 -33.81250 -32.93553 -32.60991 -32.05592 -30.08403 -28.08917 -27.56148 -25.75910 -24.43606 -24.11067 -22.81962 -22.39827 -21.44692 -19.47635 -18.80653 -17.80190 -17.41701 -16.96616 -16.69526 -16.63077 -16.28726 -16.02455 -15.91868 -15.88781 -15.36800 -15.06537 -14.85123 -14.73189 -14.29509 -14.15304 -13.95915 -13.35586 -13.29178 -13.08845 -12.92280 -12.69390 -12.52527 -12.37728 -12.02240 -11.85185 -11.69285 -11.37502 -11.23268 -10.91079 -10.59165 -10.53401 -10.03766 -9.95070 -9.78988 -8.80023 -8.67507 -6.60352 -0.26165 0.28388 0.88126 1.11164 1.37989 1.50133 1.56364 2.16203 2.30966 2.64491 2.90213 2.92116 3.33305 3.55173 3.71627 3.82084 3.91466 4.00795 4.03565 4.10832 4.13469 4.24301 4.28790 4.34084 4.53060 4.65923 4.71373 4.73186 4.79699 4.88542 4.93087 4.96088 4.96927 5.03584 5.18368 5.24088 5.38655 5.45425 5.54217 5.61862 5.87590 6.01603 6.12671 6.14642 6.46831 6.75009 6.76433 6.91139 7.61083 8.20641 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.002639 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.068253 B =10606.509885 C =11445.373673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.234 4.234 11 C 0.088 3.912 12 N -0.572 5.572 13 C 0.160 3.840 14 C -0.113 4.113 15 C -0.029 4.029 16 C -0.178 4.178 17 C 0.293 3.707 18 N -0.475 5.475 19 C 0.018 3.982 20 C 0.065 3.935 21 O -0.402 6.402 22 C 0.066 3.934 23 C 0.032 3.968 24 N -0.529 5.529 25 C 0.131 3.869 26 C -0.273 4.273 27 H 0.294 0.706 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.042 0.958 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.161 0.839 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -17.048 -1.949 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.092 3.908 10 C -0.256 4.256 11 C -0.064 4.064 12 N -0.287 5.287 13 C 0.026 3.974 14 C -0.117 4.117 15 C -0.055 4.055 16 C -0.199 4.199 17 C 0.061 3.939 18 N -0.193 5.193 19 C -0.107 4.107 20 C -0.012 4.012 21 O -0.321 6.321 22 C -0.011 4.011 23 C -0.096 4.096 24 N -0.243 5.243 25 C -0.027 4.027 26 C -0.296 4.296 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.178 0.822 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.022 -18.103 -2.469 18.948 hybrid contribution -0.077 2.674 0.571 2.735 sum 4.945 -15.430 -1.898 16.313 Atomic orbital electron populations 1.69804 1.09178 1.31239 1.33525 1.26858 0.95535 1.04771 0.90739 0.85127 0.79112 0.75394 0.79687 1.18531 1.18785 1.18134 1.19903 0.98293 0.91817 1.41593 0.89790 1.18155 0.91407 0.93080 0.88108 1.22253 1.01094 0.98503 1.03785 1.22351 0.98534 0.87930 0.97624 1.67368 1.14959 1.29053 1.17341 1.19332 0.92070 0.91417 0.94614 1.19627 0.97364 0.92753 1.01994 1.21690 0.98831 0.90529 0.94478 1.21694 0.96658 0.99567 1.02025 1.20142 0.92223 0.89284 0.92239 1.59455 1.28461 1.07041 1.24390 1.23132 1.03389 0.93153 0.91068 1.22871 0.86693 0.94396 0.97223 1.87978 1.34157 1.64449 1.45482 1.22834 1.03154 0.86489 0.88613 1.22653 0.88609 0.99215 0.99106 1.67572 1.33829 0.98662 1.24266 1.22679 0.92853 0.94826 0.92308 1.22012 1.05300 0.92924 1.09381 0.89535 0.86529 0.83214 0.83524 0.81554 0.93977 0.86814 0.90850 0.85584 0.91285 0.86365 0.89431 0.93894 0.82218 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.60 10.92 21.84 0.24 -40.36 16 2 C 0.04 1.85 5.20 85.29 0.44 2.30 16 3 Si 0.99 36.24 29.59 68.60 2.03 38.27 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.49 -25.26 9.12 23.52 0.21 -25.05 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.10 5.34 5.60 -21.12 -0.12 5.22 16 10 C -0.23 -12.10 8.79 22.86 0.20 -11.90 16 11 C 0.09 4.13 11.15 84.55 0.94 5.07 16 12 N -0.57 -26.84 9.48 -185.40 -1.76 -28.60 16 13 C 0.16 7.39 6.72 41.84 0.28 7.67 16 14 C -0.11 -4.40 5.89 -19.94 -0.12 -4.52 16 15 C -0.03 -0.96 9.68 22.65 0.22 -0.74 16 16 C -0.18 -4.78 9.20 22.47 0.21 -4.57 16 17 C 0.29 8.44 6.40 133.13 0.85 9.29 16 18 N -0.48 -11.01 4.75 -700.88 -3.33 -14.34 16 19 C 0.02 0.32 5.39 86.31 0.47 0.79 16 20 C 0.06 0.91 7.01 72.02 0.50 1.41 16 21 O -0.40 -7.60 10.83 -148.98 -1.61 -9.21 16 22 C 0.07 1.11 7.01 72.01 0.50 1.62 16 23 C 0.03 0.70 4.82 86.31 0.42 1.12 16 24 N -0.53 -17.53 8.67 -192.43 -1.67 -19.20 16 25 C 0.13 4.73 10.57 84.93 0.90 5.63 16 26 C -0.27 -13.41 9.25 23.07 0.21 -13.20 16 27 H 0.29 13.12 8.29 -92.70 -0.77 12.35 16 28 H 0.12 6.15 6.20 -2.91 -0.02 6.13 16 29 H 0.15 6.03 8.06 -2.91 -0.02 6.00 16 30 H 0.15 4.74 7.63 -2.91 -0.02 4.72 16 31 H 0.17 3.24 7.17 -2.91 -0.02 3.22 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.11 1.56 6.81 -2.39 -0.02 1.54 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 2.09 7.85 -2.39 -0.02 2.08 16 39 H 0.04 1.10 8.02 -2.39 -0.02 1.08 16 40 H 0.16 5.60 6.21 -2.91 -0.02 5.58 16 41 H 0.11 5.19 6.23 -2.91 -0.02 5.17 16 Total: -1.00 -62.54 338.45 1.09 -61.45 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 1.06 Total: 31.85 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 6.13 Total: -19.86 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -6.51 Total: -102.50 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.61 Total: -9.21 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -62.54 1.09 -61.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240992371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.170 kcal (2) G-P(sol) polarization free energy of solvation -62.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds