Wall clock time and date at job start Fri Apr 10 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48497 * 109.47218 * 240.00131 * 3 2 1 5 5 H 1.48506 * 109.46917 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47461 * 119.99857 * 3 2 1 7 7 C 1.40004 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00131 * 179.97438 * 7 2 1 9 9 C 1.41363 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.40702 * 119.76587 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.19519 * 179.97438 * 10 9 7 12 12 C 1.38701 * 118.69728 * 359.72618 * 11 10 9 13 13 C 1.39934 * 119.45700 * 0.53498 * 12 11 10 14 14 C 1.48207 * 119.60900 * 179.72376 * 13 12 11 15 15 C 1.40066 * 120.45931 * 179.72863 * 14 13 12 16 16 C 1.38000 * 118.39715 * 179.72666 * 15 14 13 17 17 C 1.39299 * 119.22877 * 0.28268 * 16 15 14 18 18 N 1.38779 * 119.56948 * 179.97438 * 17 16 15 19 19 C 1.47014 * 111.00377 * 303.63449 * 18 17 16 20 20 C 1.53096 * 109.26133 * 177.60586 * 19 18 17 21 21 O 1.43015 * 109.25816 * 56.85200 * 20 19 18 22 22 C 1.43022 * 113.73391 * 301.32801 * 21 20 19 23 23 C 1.47014 * 111.00236 * 179.97438 * 18 17 16 24 24 N 1.32481 * 120.86023 * 359.97281 * 17 16 15 25 25 C 1.31765 * 121.75373 * 0.02562 * 24 17 16 26 26 N 1.32282 * 120.77860 * 359.45573 * 13 12 11 27 27 H 0.96998 * 119.99785 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.40505 * 0.02562 * 10 9 7 29 29 H 1.08004 * 120.65256 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.27140 * 180.28630 * 12 11 10 31 31 H 1.08002 * 120.80401 * 0.02562 * 15 14 13 32 32 H 1.07999 * 120.38400 * 180.25609 * 16 15 14 33 33 H 1.09005 * 109.50561 * 297.54318 * 19 18 17 34 34 H 1.09000 * 109.50280 * 57.66937 * 19 18 17 35 35 H 1.08994 * 109.50761 * 296.91347 * 20 19 18 36 36 H 1.09006 * 109.54278 * 176.80006 * 20 19 18 37 37 H 1.08997 * 109.50431 * 298.73335 * 22 21 20 38 38 H 1.08998 * 109.53839 * 178.62931 * 22 21 20 39 39 H 1.08997 * 109.51006 * 302.33075 * 23 18 17 40 40 H 1.09005 * 109.50242 * 62.41487 * 23 18 17 41 41 H 1.08007 * 119.66151 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2125 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0094 -3.6523 -0.0005 11 6 1.3062 -4.8430 0.0000 12 6 -0.0801 -4.7977 0.0063 13 6 -0.7282 -3.5575 0.0006 14 6 -2.2093 -3.5053 0.0011 15 6 -2.8763 -2.2737 0.0012 16 6 -4.2563 -2.2747 -0.0041 17 6 -4.9356 -3.4908 -0.0033 18 7 -6.3234 -3.5001 -0.0080 19 6 -6.8593 -2.7405 1.1309 20 6 -8.3883 -2.7262 1.0537 21 8 -8.8717 -4.0718 1.0250 22 6 -8.3702 -4.8403 -0.0720 23 6 -6.8411 -4.8761 -0.0068 24 7 -4.2742 -4.6387 0.0020 25 6 -2.9572 -4.6801 0.0071 26 7 -0.0344 -2.4312 0.0000 27 1 -0.4850 0.8400 0.0004 28 1 3.0894 -3.6555 -0.0001 29 1 1.8262 -5.7896 0.0004 30 1 -0.6546 -5.7122 0.0116 31 1 -2.3240 -1.3456 0.0004 32 1 -4.8033 -1.3434 -0.0084 33 1 -6.5462 -3.2119 2.0625 34 1 -6.4835 -1.7179 1.0954 35 1 -8.7022 -2.2072 0.1482 36 1 -8.7926 -2.2128 1.9262 37 1 -8.6837 -4.3828 -1.0103 38 1 -8.7609 -5.8563 -0.0141 39 1 -6.4521 -5.4121 -0.8725 40 1 -6.5271 -5.3823 0.9061 41 1 -2.4524 -5.6350 0.0108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240992887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:15 Heat of formation + Delta-G solvation = 40.397645 kcal Electronic energy + Delta-G solvation = -24704.624501 eV Core-core repulsion = 21163.683741 eV Total energy + Delta-G solvation = -3540.940760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58556 -39.06884 -38.02218 -35.70297 -33.75756 -32.43271 -31.52718 -31.02162 -30.49703 -29.00677 -26.94089 -25.50659 -24.61209 -22.94206 -22.70100 -21.22869 -20.75858 -20.18321 -17.80102 -17.47489 -16.49479 -16.06105 -15.72173 -15.45410 -15.16824 -15.04194 -14.76426 -14.71077 -14.37133 -13.86732 -13.56932 -13.33147 -13.14623 -12.70100 -12.43544 -12.27932 -12.17603 -11.66659 -11.56786 -11.33694 -11.27878 -11.11918 -10.85407 -10.81469 -10.58968 -10.17883 -10.09487 -9.71281 -9.41882 -9.31058 -9.08701 -8.47131 -8.06312 -7.73568 -7.18890 -6.52720 -4.62294 1.27212 1.79438 2.72393 2.95756 3.02726 3.04892 3.14165 3.47987 3.68730 3.87225 4.24878 4.55032 4.73147 4.77322 4.86556 4.95319 5.08269 5.14606 5.27811 5.33004 5.45268 5.47884 5.51368 5.63832 5.65495 5.82677 5.84473 5.89702 5.94824 6.16128 6.35363 6.40451 6.57768 6.66017 6.70257 6.88790 6.91031 7.04526 7.11669 7.19277 7.37220 7.47525 7.62209 7.91681 8.11091 8.32745 8.56114 8.81120 9.93471 10.20210 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.003309 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.558532 B = 8460.532903 C = 9808.614085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.430 4.430 8 H 0.084 0.916 9 C 0.257 3.743 10 C -0.270 4.270 11 C -0.058 4.058 12 C -0.300 4.300 13 C 0.180 3.820 14 C -0.085 4.085 15 C -0.019 4.019 16 C -0.191 4.191 17 C 0.288 3.712 18 N -0.476 5.476 19 C 0.021 3.979 20 C 0.065 3.935 21 O -0.387 6.387 22 C 0.060 3.940 23 C 0.032 3.968 24 N -0.524 5.524 25 C 0.126 3.874 26 N -0.470 5.470 27 H 0.273 0.727 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -2.981 0.810 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.153 4.153 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.132 3.868 10 C -0.293 4.293 11 C -0.082 4.082 12 C -0.324 4.324 13 C 0.035 3.965 14 C -0.089 4.089 15 C -0.045 4.045 16 C -0.213 4.213 17 C 0.057 3.943 18 N -0.195 5.195 19 C -0.106 4.106 20 C -0.012 4.012 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.096 4.096 24 N -0.238 5.238 25 C -0.032 4.032 26 N -0.182 5.182 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.182 0.818 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.137 -2.618 0.525 14.387 hybrid contribution 1.942 0.365 0.328 2.003 sum -12.196 -2.253 0.853 12.431 Atomic orbital electron populations 1.70048 1.07278 1.27846 1.29052 1.26022 0.94911 1.01060 0.93337 0.86362 0.80100 0.80313 0.79907 1.18939 1.20175 1.18957 1.19571 0.94283 0.89305 1.42970 0.89781 1.18497 0.87777 0.92050 0.88496 1.21811 0.98859 0.93546 1.15085 1.20791 0.93796 0.96760 0.96883 1.21185 0.94631 0.96654 1.19924 1.19518 0.90915 0.90230 0.95801 1.19741 0.93487 0.93614 1.02047 1.22041 0.92586 1.00156 0.89714 1.21487 0.94933 0.97287 1.07621 1.19676 0.88640 0.89820 0.96173 1.59363 1.04092 1.15470 1.40550 1.22952 0.96398 0.99793 0.91421 1.22687 0.91718 0.84069 1.02760 1.87982 1.69936 1.23588 1.49010 1.22789 0.92518 0.96543 0.89828 1.22612 0.94690 0.88451 1.03810 1.67465 1.10246 1.28370 1.17672 1.22627 0.87891 0.98172 0.94523 1.68715 1.07479 1.25093 1.16946 0.91594 0.88167 0.88328 0.88398 0.81762 0.85268 0.92883 0.88692 0.92020 0.88029 0.92322 0.88164 0.88667 0.92423 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.89 11.18 55.55 0.62 -17.27 16 2 C 0.07 1.74 5.50 -17.35 -0.10 1.64 16 3 Si 0.91 17.88 29.56 -169.99 -5.02 12.85 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.43 -11.06 9.14 -37.73 -0.34 -11.40 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 C 0.26 6.81 6.55 -85.01 -0.56 6.25 16 10 C -0.27 -6.44 9.83 -38.64 -0.38 -6.82 16 11 C -0.06 -1.27 10.15 -39.39 -0.40 -1.67 16 12 C -0.30 -6.56 9.48 -38.78 -0.37 -6.92 16 13 C 0.18 4.26 6.74 -82.94 -0.56 3.70 16 14 C -0.09 -1.77 5.89 -104.73 -0.62 -2.39 16 15 C -0.02 -0.37 9.68 -38.98 -0.38 -0.75 16 16 C -0.19 -3.21 9.20 -39.27 -0.36 -3.57 16 17 C 0.29 4.76 6.40 -155.11 -0.99 3.77 16 18 N -0.48 -6.57 4.74 -172.89 -0.82 -7.39 16 19 C 0.02 0.24 5.39 -3.71 -0.02 0.22 16 20 C 0.06 0.62 7.01 37.21 0.26 0.88 16 21 O -0.39 -4.44 10.83 -35.23 -0.38 -4.82 16 22 C 0.06 0.61 7.01 37.21 0.26 0.87 16 23 C 0.03 0.40 4.82 -3.71 -0.02 0.38 16 24 N -0.52 -9.19 8.67 -12.17 -0.11 -9.30 16 25 C 0.13 2.31 10.58 -17.20 -0.18 2.13 16 26 N -0.47 -12.32 6.99 -7.69 -0.05 -12.38 16 27 H 0.27 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.10 1.84 6.19 -52.49 -0.32 1.52 16 31 H 0.16 3.55 7.34 -52.49 -0.39 3.17 16 32 H 0.13 1.84 7.17 -52.49 -0.38 1.47 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.99 6.81 -51.93 -0.35 0.63 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.23 7.85 -51.93 -0.41 0.82 16 40 H 0.06 0.79 8.02 -51.93 -0.42 0.37 16 41 H 0.16 2.57 6.17 -52.48 -0.32 2.25 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -28.77 339.19 -10.50 -39.27 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.09 Total: 7.59 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.75 Total: -13.67 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.36 Total: -46.34 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.38 Total: -4.82 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.77 -10.50 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240992887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.670 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds