Wall clock time and date at job start Fri Apr 10 2020 22:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48497 * 109.47218 * 240.00131 * 3 2 1 5 5 H 1.48506 * 109.46917 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47461 * 119.99857 * 3 2 1 7 7 C 1.40004 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00131 * 179.97438 * 7 2 1 9 9 C 1.41363 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.40702 * 119.76587 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.19519 * 179.97438 * 10 9 7 12 12 C 1.38701 * 118.69728 * 359.72618 * 11 10 9 13 13 C 1.39934 * 119.45700 * 0.53498 * 12 11 10 14 14 C 1.48207 * 119.60900 * 179.72376 * 13 12 11 15 15 C 1.40066 * 120.45931 * 179.72863 * 14 13 12 16 16 C 1.38000 * 118.39715 * 179.72666 * 15 14 13 17 17 C 1.39299 * 119.22877 * 0.28268 * 16 15 14 18 18 N 1.38779 * 119.56948 * 179.97438 * 17 16 15 19 19 C 1.47014 * 111.00377 * 303.63449 * 18 17 16 20 20 C 1.53096 * 109.26133 * 177.60586 * 19 18 17 21 21 O 1.43015 * 109.25816 * 56.85200 * 20 19 18 22 22 C 1.43022 * 113.73391 * 301.32801 * 21 20 19 23 23 C 1.47014 * 111.00236 * 179.97438 * 18 17 16 24 24 N 1.32481 * 120.86023 * 359.97281 * 17 16 15 25 25 C 1.31765 * 121.75373 * 0.02562 * 24 17 16 26 26 N 1.32282 * 120.77860 * 359.45573 * 13 12 11 27 27 H 0.96998 * 119.99785 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.40505 * 0.02562 * 10 9 7 29 29 H 1.08004 * 120.65256 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.27140 * 180.28630 * 12 11 10 31 31 H 1.08002 * 120.80401 * 0.02562 * 15 14 13 32 32 H 1.07999 * 120.38400 * 180.25609 * 16 15 14 33 33 H 1.09005 * 109.50561 * 297.54318 * 19 18 17 34 34 H 1.09000 * 109.50280 * 57.66937 * 19 18 17 35 35 H 1.08994 * 109.50761 * 296.91347 * 20 19 18 36 36 H 1.09006 * 109.54278 * 176.80006 * 20 19 18 37 37 H 1.08997 * 109.50431 * 298.73335 * 22 21 20 38 38 H 1.08998 * 109.53839 * 178.62931 * 22 21 20 39 39 H 1.08997 * 109.51006 * 302.33075 * 23 18 17 40 40 H 1.09005 * 109.50242 * 62.41487 * 23 18 17 41 41 H 1.08007 * 119.66151 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2125 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0094 -3.6523 -0.0005 11 6 1.3062 -4.8430 0.0000 12 6 -0.0801 -4.7977 0.0063 13 6 -0.7282 -3.5575 0.0006 14 6 -2.2093 -3.5053 0.0011 15 6 -2.8763 -2.2737 0.0012 16 6 -4.2563 -2.2747 -0.0041 17 6 -4.9356 -3.4908 -0.0033 18 7 -6.3234 -3.5001 -0.0080 19 6 -6.8593 -2.7405 1.1309 20 6 -8.3883 -2.7262 1.0537 21 8 -8.8717 -4.0718 1.0250 22 6 -8.3702 -4.8403 -0.0720 23 6 -6.8411 -4.8761 -0.0068 24 7 -4.2742 -4.6387 0.0020 25 6 -2.9572 -4.6801 0.0071 26 7 -0.0344 -2.4312 0.0000 27 1 -0.4850 0.8400 0.0004 28 1 3.0894 -3.6555 -0.0001 29 1 1.8262 -5.7896 0.0004 30 1 -0.6546 -5.7122 0.0116 31 1 -2.3240 -1.3456 0.0004 32 1 -4.8033 -1.3434 -0.0084 33 1 -6.5462 -3.2119 2.0625 34 1 -6.4835 -1.7179 1.0954 35 1 -8.7022 -2.2072 0.1482 36 1 -8.7926 -2.2128 1.9262 37 1 -8.6837 -4.3828 -1.0103 38 1 -8.7609 -5.8563 -0.0141 39 1 -6.4521 -5.4121 -0.8725 40 1 -6.5271 -5.3823 0.9061 41 1 -2.4524 -5.6350 0.0108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240992887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:14 Heat of formation + Delta-G solvation = 23.819831 kcal Electronic energy + Delta-G solvation = -24705.343369 eV Core-core repulsion = 21163.683741 eV Total energy + Delta-G solvation = -3541.659628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82441 -40.36150 -39.56267 -36.84218 -35.52194 -33.88186 -32.87147 -32.34984 -32.03048 -30.49708 -28.26708 -27.13144 -25.69412 -24.36871 -24.06561 -22.82742 -22.20767 -21.40467 -19.43537 -18.78479 -17.80312 -17.40266 -16.94919 -16.64155 -16.46081 -16.29076 -16.04402 -15.91943 -15.77892 -15.31858 -15.00943 -14.77666 -14.65249 -14.15464 -13.95677 -13.85866 -13.29035 -12.95712 -12.87760 -12.76834 -12.65230 -12.54029 -12.37904 -12.24171 -11.80203 -11.69962 -11.45797 -11.12610 -10.86045 -10.57322 -10.50848 -10.10493 -9.71993 -9.54361 -8.75153 -8.30764 -6.51523 -0.21826 0.33583 1.01387 1.23950 1.41205 1.52159 1.55581 2.22699 2.32786 2.72532 2.90409 3.01298 3.37803 3.69301 3.81900 3.92727 3.97123 4.03220 4.10190 4.12847 4.15117 4.26702 4.32620 4.40871 4.54122 4.63859 4.70853 4.74934 4.78315 4.83034 4.89776 4.95967 4.96468 5.05211 5.22770 5.38877 5.45402 5.51918 5.64490 5.70139 5.84766 6.05297 6.12045 6.16128 6.25584 6.73228 6.90753 6.96257 8.12120 8.43904 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.003309 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.558532 B = 8460.532903 C = 9808.614085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.468 4.468 8 H 0.087 0.913 9 C 0.223 3.777 10 C -0.294 4.294 11 C -0.056 4.056 12 C -0.301 4.301 13 C 0.161 3.839 14 C -0.116 4.116 15 C -0.031 4.031 16 C -0.186 4.186 17 C 0.296 3.704 18 N -0.476 5.476 19 C 0.018 3.982 20 C 0.067 3.933 21 O -0.401 6.401 22 C 0.065 3.935 23 C 0.032 3.968 24 N -0.528 5.528 25 C 0.136 3.864 26 N -0.499 5.499 27 H 0.279 0.721 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.042 0.958 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 -3.301 0.845 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.097 3.903 10 C -0.317 4.317 11 C -0.080 4.080 12 C -0.324 4.324 13 C 0.017 3.983 14 C -0.120 4.120 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.064 3.936 18 N -0.195 5.195 19 C -0.107 4.107 20 C -0.010 4.010 21 O -0.319 6.319 22 C -0.012 4.012 23 C -0.095 4.095 24 N -0.241 5.241 25 C -0.022 4.022 26 N -0.213 5.213 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.061 0.939 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.979 -2.963 0.564 16.261 hybrid contribution 2.328 0.347 0.314 2.375 sum -13.650 -2.616 0.878 13.927 Atomic orbital electron populations 1.70149 1.08640 1.29013 1.29398 1.26882 0.95777 1.04187 0.92541 0.85225 0.78671 0.75724 0.79843 1.18598 1.19173 1.18581 1.19910 0.94721 0.90374 1.44898 0.89441 1.18990 0.88537 0.93445 0.89341 1.22008 0.99576 0.93799 1.16294 1.21224 0.94003 0.97614 0.95160 1.21595 0.95117 0.97305 1.18372 1.20084 0.92447 0.90492 0.95228 1.19755 0.92372 0.94925 1.04967 1.21897 0.93860 0.99112 0.90843 1.21624 0.93721 0.98673 1.06752 1.20022 0.90039 0.89383 0.94143 1.59401 1.02255 1.16524 1.41304 1.23106 0.97932 0.99844 0.89866 1.22841 0.89994 0.83667 1.04498 1.87975 1.70009 1.24428 1.49512 1.22857 0.90469 0.97842 0.89991 1.22668 0.96514 0.87402 1.02887 1.67581 1.09724 1.28777 1.18067 1.22795 0.88117 0.97958 0.93327 1.68687 1.07653 1.26710 1.18247 0.91046 0.87162 0.84505 0.85176 0.84199 0.82754 0.93929 0.87524 0.90944 0.85642 0.91396 0.86075 0.89176 0.93729 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.76 11.18 21.83 0.24 -38.51 16 2 C 0.03 1.40 5.50 85.28 0.47 1.87 16 3 Si 0.98 37.41 29.56 68.60 2.03 39.43 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 7 C -0.47 -25.08 9.14 23.47 0.21 -24.87 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.22 12.28 6.55 40.26 0.26 12.54 16 10 C -0.29 -14.33 9.83 22.88 0.22 -14.10 16 11 C -0.06 -2.40 10.15 22.39 0.23 -2.17 16 12 C -0.30 -12.97 9.48 22.79 0.22 -12.75 16 13 C 0.16 7.82 6.74 42.14 0.28 8.10 16 14 C -0.12 -4.91 5.89 -19.94 -0.12 -5.03 16 15 C -0.03 -1.25 9.68 22.66 0.22 -1.03 16 16 C -0.19 -6.12 9.20 22.47 0.21 -5.92 16 17 C 0.30 9.40 6.40 133.16 0.85 10.26 16 18 N -0.48 -12.20 4.74 -700.89 -3.32 -15.53 16 19 C 0.02 0.38 5.39 86.31 0.47 0.85 16 20 C 0.07 1.08 7.01 72.01 0.50 1.59 16 21 O -0.40 -8.04 10.83 -148.98 -1.61 -9.65 16 22 C 0.07 1.15 7.01 72.01 0.50 1.65 16 23 C 0.03 0.75 4.82 86.31 0.42 1.17 16 24 N -0.53 -17.89 8.67 -192.40 -1.67 -19.56 16 25 C 0.14 4.90 10.58 84.95 0.90 5.80 16 26 N -0.50 -27.36 6.99 -178.24 -1.25 -28.60 16 27 H 0.28 12.99 8.29 -92.71 -0.77 12.23 16 28 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 29 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.13 4.62 6.19 -2.91 -0.02 4.61 16 31 H 0.14 6.40 7.34 -2.91 -0.02 6.38 16 32 H 0.15 4.18 7.17 -2.91 -0.02 4.16 16 33 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.11 1.95 6.81 -2.39 -0.02 1.93 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 2.17 7.85 -2.39 -0.02 2.15 16 40 H 0.04 1.16 8.02 -2.38 -0.02 1.14 16 41 H 0.17 5.44 6.17 -2.91 -0.02 5.42 16 Total: -1.00 -64.61 339.19 1.32 -63.29 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 1.05 Total: 31.19 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 5.85 Total: -22.05 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -5.99 Total: -102.20 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.61 Total: -9.65 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.43 kcal Total: -64.61 1.32 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240992887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.109 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds