Wall clock time and date at job start Fri Apr 10 2020 22:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47286 * 239.99762 * 3 2 1 5 5 H 1.48501 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46710 * 119.99935 * 3 2 1 7 7 C 1.39990 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99798 * 163.19366 * 7 2 1 9 9 C 1.41017 * 120.00112 * 343.19649 * 7 2 1 10 10 C 1.41341 * 120.54713 * 335.67006 * 9 7 2 11 11 C 1.36540 * 118.42396 * 179.97438 * 10 9 7 12 12 C 1.39987 * 119.46385 * 359.97438 * 11 10 9 13 13 C 1.47811 * 119.45910 * 179.97438 * 12 11 10 14 14 C 1.40280 * 120.47784 * 185.02534 * 13 12 11 15 15 C 1.36913 * 118.49573 * 179.97438 * 14 13 12 16 16 C 1.39367 * 119.38223 * 359.97438 * 15 14 13 17 17 N 1.38681 * 119.53656 * 179.97438 * 16 15 14 18 18 C 1.47009 * 111.00139 * 303.63729 * 17 16 15 19 19 C 1.53099 * 109.25638 * 177.60958 * 18 17 16 20 20 O 1.43018 * 109.26075 * 56.84525 * 19 18 17 21 21 C 1.43010 * 113.73878 * 301.33158 * 20 19 18 22 22 C 1.47018 * 110.99644 * 179.97438 * 17 16 15 23 23 N 1.32548 * 120.92357 * 0.02562 * 16 15 14 24 24 C 1.31734 * 121.63608 * 0.02562 * 23 16 15 25 25 N 1.33071 * 121.08636 * 0.26064 * 12 11 10 26 26 C 1.31270 * 121.71436 * 359.46805 * 25 12 11 27 27 H 0.97000 * 120.00141 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.78559 * 359.94943 * 10 9 7 29 29 H 1.07999 * 120.27005 * 179.97438 * 11 10 9 30 30 H 1.08000 * 120.75239 * 359.95073 * 14 13 12 31 31 H 1.07997 * 120.30929 * 179.97438 * 15 14 13 32 32 H 1.08997 * 109.50298 * 297.53867 * 18 17 16 33 33 H 1.08995 * 109.50918 * 57.67518 * 18 17 16 34 34 H 1.09006 * 109.50397 * 296.91174 * 19 18 17 35 35 H 1.08997 * 109.54675 * 176.80581 * 19 18 17 36 36 H 1.09000 * 109.51181 * 298.73367 * 21 20 19 37 37 H 1.09001 * 109.54320 * 178.62805 * 21 20 19 38 38 H 1.08994 * 109.50852 * 302.33169 * 22 17 16 39 39 H 1.09005 * 109.50641 * 62.41903 * 22 17 16 40 40 H 1.08006 * 119.74442 * 180.28070 * 24 23 16 41 41 H 1.08000 * 119.79609 * 180.26331 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6963 1.2125 7 6 2.0080 -1.2124 -0.0005 8 1 3.0534 -1.2322 -0.2710 9 6 1.3481 -2.4077 0.3520 10 6 0.1975 -2.3780 1.1722 11 6 -0.4075 -3.5611 1.4863 12 6 0.1230 -4.7584 0.9916 13 6 -0.5317 -6.0391 1.3321 14 6 0.0399 -7.2576 0.9365 15 6 -0.6006 -8.4196 1.2741 16 6 -1.7917 -8.3593 1.9953 17 7 -2.4434 -9.5343 2.3385 18 6 -2.7366 -10.3419 1.1455 19 6 -3.4005 -11.6531 1.5742 20 8 -4.5772 -11.3603 2.3325 21 6 -4.3281 -10.5756 3.5018 22 6 -3.6733 -9.2534 3.0933 23 7 -2.3107 -7.1945 2.3569 24 6 -1.7273 -6.0535 2.0518 25 7 1.2104 -4.7629 0.2245 26 6 1.8242 -3.6516 -0.1091 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1937 -1.4417 1.5422 29 1 -1.2883 -3.5731 2.1112 30 1 0.9640 -7.2786 0.3781 31 1 -0.1868 -9.3741 0.9842 32 1 -3.4100 -9.7905 0.4894 33 1 -1.8089 -10.5596 0.6164 34 1 -2.7067 -12.2291 2.1867 35 1 -3.6714 -12.2307 0.6904 36 1 -3.6614 -11.1201 4.1704 37 1 -5.2696 -10.3731 4.0124 38 1 -3.4292 -8.6768 3.9854 39 1 -4.3616 -8.6838 2.4687 40 1 -2.1748 -5.1220 2.3659 41 1 2.7021 -3.6911 -0.7369 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240993010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:19 Heat of formation + Delta-G solvation = 27.996140 kcal Electronic energy + Delta-G solvation = -24204.264954 eV Core-core repulsion = 20662.786424 eV Total energy + Delta-G solvation = -3541.478530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.59660 -39.12203 -38.19430 -35.73340 -34.35789 -32.40163 -31.49068 -31.19105 -30.69470 -29.20671 -27.14010 -25.24474 -24.62079 -22.96670 -22.68530 -21.32426 -20.91176 -20.29066 -17.76715 -17.56502 -16.53118 -16.22602 -15.97871 -15.46479 -15.44488 -15.11687 -15.01981 -14.57615 -14.33499 -13.96202 -13.61133 -13.35504 -13.18702 -12.79591 -12.49047 -12.33624 -12.19821 -11.79804 -11.69922 -11.57687 -11.48659 -11.47009 -11.08413 -10.84905 -10.77093 -10.15851 -10.08220 -9.74760 -9.46812 -9.41214 -9.11598 -8.47314 -8.32784 -8.18501 -7.29480 -7.06134 -4.65277 1.27052 1.74599 2.56097 2.85614 2.89154 2.91009 3.05984 3.48291 3.66187 3.68082 4.14631 4.52642 4.55242 4.76795 4.85697 4.94370 5.07789 5.13939 5.27649 5.32082 5.41020 5.43946 5.50933 5.52730 5.54471 5.63742 5.80833 5.87811 5.94772 6.17302 6.25834 6.50649 6.51831 6.60492 6.72643 6.83623 6.85282 6.90293 6.97143 7.09277 7.34020 7.56216 7.65469 7.76378 8.20598 8.34616 8.40311 8.50568 9.43124 9.77973 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.042601 B = 0.002399 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.107948 B =11669.479649 C =12115.796499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.429 4.429 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.143 4.143 11 C -0.120 4.120 12 C -0.007 4.007 13 C -0.043 4.043 14 C -0.055 4.055 15 C -0.174 4.174 16 C 0.266 3.734 17 N -0.474 5.474 18 C 0.021 3.979 19 C 0.065 3.935 20 O -0.387 6.387 21 C 0.060 3.940 22 C 0.032 3.968 23 N -0.510 5.510 24 C 0.100 3.900 25 N -0.448 5.448 26 C -0.015 4.015 27 H 0.289 0.711 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.155 0.845 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -12.703 3.400 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.458 4.458 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.168 4.168 11 C -0.141 4.141 12 C -0.141 4.141 13 C -0.046 4.046 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.034 3.966 17 N -0.194 5.194 18 C -0.106 4.106 19 C -0.012 4.012 20 O -0.305 6.305 21 C -0.017 4.017 22 C -0.095 4.095 23 N -0.223 5.223 24 C -0.058 4.058 25 N -0.155 5.155 26 C -0.181 4.181 27 H 0.100 0.900 28 H 0.146 0.854 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.172 0.828 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.545 -13.713 3.832 15.279 hybrid contribution 0.644 2.302 -0.569 2.457 sum -4.901 -11.411 3.263 12.840 Atomic orbital electron populations 1.69772 1.07903 1.30398 1.31568 1.26117 0.94898 1.02086 0.91953 0.86185 0.80125 0.79161 0.80412 1.18535 1.19981 1.18422 1.19680 0.98078 0.90858 1.37147 0.89398 1.18624 0.92067 0.93712 0.89191 1.21328 0.98607 0.97004 0.99833 1.21278 0.99228 0.93355 1.00194 1.18546 0.97801 0.90237 1.07503 1.19583 0.94726 0.93189 0.97150 1.21287 0.99493 0.90681 0.96692 1.21127 0.96229 0.99355 1.02957 1.19560 0.93071 0.88005 0.95939 1.59375 1.23761 1.15295 1.20924 1.22943 1.01524 0.95012 0.91113 1.22682 0.87351 0.94951 0.96247 1.87980 1.31678 1.72268 1.38598 1.22788 1.00856 0.90603 0.87415 1.22600 0.89904 0.97172 0.99860 1.67446 1.33706 0.97819 1.23373 1.22578 0.92525 0.94921 0.95821 1.66907 1.06532 1.32043 1.10062 1.22455 1.02700 0.87774 1.05194 0.89987 0.85435 0.88032 0.84207 0.85545 0.92985 0.88886 0.92084 0.88102 0.92355 0.88182 0.88705 0.92481 0.82810 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.15 10.91 55.55 0.61 -17.55 16 2 C 0.07 1.60 5.18 -17.33 -0.09 1.51 16 3 Si 0.92 16.78 29.59 -169.99 -5.03 11.75 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 5 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.43 -10.27 9.06 -37.87 -0.34 -10.62 16 8 H 0.09 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.07 1.71 5.59 -106.64 -0.60 1.12 16 10 C -0.14 -3.47 8.73 -39.02 -0.34 -3.81 16 11 C -0.12 -2.69 9.38 -39.54 -0.37 -3.07 16 12 C -0.01 -0.15 6.73 -82.76 -0.56 -0.71 16 13 C -0.04 -0.85 5.89 -104.72 -0.62 -1.46 16 14 C -0.06 -0.98 9.63 -39.29 -0.38 -1.36 16 15 C -0.17 -2.72 9.15 -39.64 -0.36 -3.08 16 16 C 0.27 4.26 6.40 -155.12 -0.99 3.27 16 17 N -0.47 -6.38 4.74 -172.88 -0.82 -7.20 16 18 C 0.02 0.23 5.39 -3.71 -0.02 0.21 16 19 C 0.06 0.60 7.01 37.21 0.26 0.86 16 20 O -0.39 -4.38 10.83 -35.23 -0.38 -4.77 16 21 C 0.06 0.61 7.01 37.21 0.26 0.87 16 22 C 0.03 0.40 4.81 -3.71 -0.02 0.38 16 23 N -0.51 -8.90 8.67 -12.09 -0.10 -9.00 16 24 C 0.10 1.82 10.59 -17.10 -0.18 1.64 16 25 N -0.45 -10.55 9.47 -9.11 -0.09 -10.64 16 26 C -0.02 -0.37 10.97 -16.77 -0.18 -0.55 16 27 H 0.29 6.12 8.30 -40.82 -0.34 5.79 16 28 H 0.13 3.12 6.21 -52.48 -0.33 2.80 16 29 H 0.10 1.98 6.20 -52.49 -0.33 1.66 16 30 H 0.14 2.47 7.61 -52.49 -0.40 2.07 16 31 H 0.13 1.62 7.17 -52.49 -0.38 1.24 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.90 6.80 -51.93 -0.35 0.55 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.22 7.85 -51.93 -0.41 0.82 16 39 H 0.06 0.79 8.02 -51.93 -0.42 0.37 16 40 H 0.15 2.60 6.19 -52.48 -0.32 2.27 16 41 H 0.13 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -27.37 338.08 -10.27 -37.63 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.01 Total: 9.48 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -4.53 Total: -14.80 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.40 Total: -44.39 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.38 Total: -4.77 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.37 -10.27 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240993010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.630 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds