Wall clock time and date at job start Fri Apr 10 2020 22:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47286 * 239.99762 * 3 2 1 5 5 H 1.48501 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46710 * 119.99935 * 3 2 1 7 7 C 1.39990 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99798 * 163.19366 * 7 2 1 9 9 C 1.41017 * 120.00112 * 343.19649 * 7 2 1 10 10 C 1.41341 * 120.54713 * 335.67006 * 9 7 2 11 11 C 1.36540 * 118.42396 * 179.97438 * 10 9 7 12 12 C 1.39987 * 119.46385 * 359.97438 * 11 10 9 13 13 C 1.47811 * 119.45910 * 179.97438 * 12 11 10 14 14 C 1.40280 * 120.47784 * 185.02534 * 13 12 11 15 15 C 1.36913 * 118.49573 * 179.97438 * 14 13 12 16 16 C 1.39367 * 119.38223 * 359.97438 * 15 14 13 17 17 N 1.38681 * 119.53656 * 179.97438 * 16 15 14 18 18 C 1.47009 * 111.00139 * 303.63729 * 17 16 15 19 19 C 1.53099 * 109.25638 * 177.60958 * 18 17 16 20 20 O 1.43018 * 109.26075 * 56.84525 * 19 18 17 21 21 C 1.43010 * 113.73878 * 301.33158 * 20 19 18 22 22 C 1.47018 * 110.99644 * 179.97438 * 17 16 15 23 23 N 1.32548 * 120.92357 * 0.02562 * 16 15 14 24 24 C 1.31734 * 121.63608 * 0.02562 * 23 16 15 25 25 N 1.33071 * 121.08636 * 0.26064 * 12 11 10 26 26 C 1.31270 * 121.71436 * 359.46805 * 25 12 11 27 27 H 0.97000 * 120.00141 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.78559 * 359.94943 * 10 9 7 29 29 H 1.07999 * 120.27005 * 179.97438 * 11 10 9 30 30 H 1.08000 * 120.75239 * 359.95073 * 14 13 12 31 31 H 1.07997 * 120.30929 * 179.97438 * 15 14 13 32 32 H 1.08997 * 109.50298 * 297.53867 * 18 17 16 33 33 H 1.08995 * 109.50918 * 57.67518 * 18 17 16 34 34 H 1.09006 * 109.50397 * 296.91174 * 19 18 17 35 35 H 1.08997 * 109.54675 * 176.80581 * 19 18 17 36 36 H 1.09000 * 109.51181 * 298.73367 * 21 20 19 37 37 H 1.09001 * 109.54320 * 178.62805 * 21 20 19 38 38 H 1.08994 * 109.50852 * 302.33169 * 22 17 16 39 39 H 1.09005 * 109.50641 * 62.41903 * 22 17 16 40 40 H 1.08006 * 119.74442 * 180.28070 * 24 23 16 41 41 H 1.08000 * 119.79609 * 180.26331 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6963 1.2125 7 6 2.0080 -1.2124 -0.0005 8 1 3.0534 -1.2322 -0.2710 9 6 1.3481 -2.4077 0.3520 10 6 0.1975 -2.3780 1.1722 11 6 -0.4075 -3.5611 1.4863 12 6 0.1230 -4.7584 0.9916 13 6 -0.5317 -6.0391 1.3321 14 6 0.0399 -7.2576 0.9365 15 6 -0.6006 -8.4196 1.2741 16 6 -1.7917 -8.3593 1.9953 17 7 -2.4434 -9.5343 2.3385 18 6 -2.7366 -10.3419 1.1455 19 6 -3.4005 -11.6531 1.5742 20 8 -4.5772 -11.3603 2.3325 21 6 -4.3281 -10.5756 3.5018 22 6 -3.6733 -9.2534 3.0933 23 7 -2.3107 -7.1945 2.3569 24 6 -1.7273 -6.0535 2.0518 25 7 1.2104 -4.7629 0.2245 26 6 1.8242 -3.6516 -0.1091 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1937 -1.4417 1.5422 29 1 -1.2883 -3.5731 2.1112 30 1 0.9640 -7.2786 0.3781 31 1 -0.1868 -9.3741 0.9842 32 1 -3.4100 -9.7905 0.4894 33 1 -1.8089 -10.5596 0.6164 34 1 -2.7067 -12.2291 2.1867 35 1 -3.6714 -12.2307 0.6904 36 1 -3.6614 -11.1201 4.1704 37 1 -5.2696 -10.3731 4.0124 38 1 -3.4292 -8.6768 3.9854 39 1 -4.3616 -8.6838 2.4687 40 1 -2.1748 -5.1220 2.3659 41 1 2.7021 -3.6911 -0.7369 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240993010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:18 Heat of formation + Delta-G solvation = 12.599529 kcal Electronic energy + Delta-G solvation = -24204.932601 eV Core-core repulsion = 20662.786424 eV Total energy + Delta-G solvation = -3542.146177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80830 -40.46079 -39.64927 -36.87396 -36.01808 -33.76920 -32.95658 -32.56610 -32.05126 -30.68131 -28.39050 -26.78577 -25.69040 -24.32882 -24.12729 -22.86778 -22.39522 -21.41816 -19.39005 -18.84385 -17.84743 -17.68007 -17.12833 -16.86818 -16.55062 -16.24185 -15.98683 -15.92576 -15.67132 -15.30825 -15.04442 -14.78303 -14.69638 -14.14134 -14.00811 -13.78359 -13.56861 -13.28628 -13.20909 -13.02517 -12.67314 -12.50733 -12.36957 -12.24903 -11.79013 -11.68147 -11.42890 -11.12730 -10.85787 -10.56206 -10.48525 -10.28735 -10.01365 -9.77886 -8.89224 -8.70053 -6.45513 -0.18208 0.36790 0.89749 1.09248 1.38560 1.50512 1.55406 2.14077 2.35734 2.60879 2.91218 2.97385 3.40870 3.68278 3.74305 3.83718 3.94519 4.04136 4.09051 4.14589 4.16797 4.26060 4.29521 4.36382 4.54727 4.64081 4.70401 4.71802 4.79737 4.85674 4.89361 4.94560 4.97134 5.04116 5.13569 5.28672 5.38613 5.47560 5.65105 5.75264 5.86697 5.96672 6.11488 6.13456 6.41349 6.63747 6.69907 6.99148 7.61925 8.12312 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.042601 B = 0.002399 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.107948 B =11669.479649 C =12115.796499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.093 0.907 9 C 0.042 3.958 10 C -0.161 4.161 11 C -0.127 4.127 12 C -0.006 4.006 13 C -0.076 4.076 14 C -0.054 4.054 15 C -0.169 4.169 16 C 0.274 3.726 17 N -0.474 5.474 18 C 0.019 3.981 19 C 0.066 3.934 20 O -0.402 6.402 21 C 0.066 3.934 22 C 0.033 3.967 23 N -0.523 5.523 24 C 0.105 3.895 25 N -0.458 5.458 26 C -0.034 4.034 27 H 0.297 0.703 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.161 0.839 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.162 0.838 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 -14.562 3.768 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.111 0.889 9 C 0.037 3.963 10 C -0.186 4.186 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.080 4.080 14 C -0.080 4.080 15 C -0.191 4.191 16 C 0.042 3.958 17 N -0.193 5.193 18 C -0.107 4.107 19 C -0.011 4.011 20 O -0.321 6.321 21 C -0.011 4.011 22 C -0.095 4.095 23 N -0.236 5.236 24 C -0.053 4.053 25 N -0.166 5.166 26 C -0.199 4.199 27 H 0.108 0.892 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.178 0.822 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.179 0.821 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.974 -15.598 4.191 17.220 hybrid contribution 0.629 2.563 -0.620 2.711 sum -5.345 -13.034 3.571 14.533 Atomic orbital electron populations 1.69813 1.09317 1.31704 1.32135 1.26970 0.95566 1.05085 0.90840 0.85095 0.78724 0.74687 0.80423 1.17910 1.19104 1.18220 1.19945 0.98581 0.91616 1.38724 0.88865 1.18923 0.92775 0.94580 0.89983 1.21377 0.99253 0.97350 1.00607 1.21540 0.99895 0.92886 1.00334 1.19028 0.97254 0.91600 1.06278 1.19552 0.96034 0.92698 0.99738 1.21368 0.99483 0.90863 0.96312 1.21381 0.95676 0.99956 1.02046 1.20025 0.93151 0.88477 0.94133 1.59421 1.24141 1.13885 1.21868 1.23106 1.02388 0.95255 0.89997 1.22859 0.86956 0.94031 0.97265 1.87972 1.32849 1.72220 1.39047 1.22837 1.01820 0.89117 0.87323 1.22631 0.89201 0.98555 0.99067 1.67535 1.33862 0.98072 1.24148 1.22668 0.91906 0.95693 0.95048 1.66951 1.07121 1.31879 1.10615 1.22686 1.03469 0.87837 1.05870 0.89228 0.86297 0.85638 0.84314 0.82177 0.94250 0.87112 0.90853 0.85686 0.91294 0.86359 0.89418 0.94124 0.82123 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.77 10.91 21.83 0.24 -38.54 16 2 C 0.03 1.54 5.18 85.27 0.44 1.99 16 3 Si 0.99 34.43 29.59 68.60 2.03 36.46 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.27 -8.81 7.11 99.48 0.71 -8.10 16 6 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.46 -22.77 9.06 23.38 0.21 -22.56 16 8 H 0.09 4.31 7.90 -2.91 -0.02 4.29 16 9 C 0.04 2.17 5.59 -21.17 -0.12 2.06 16 10 C -0.16 -8.12 8.73 22.64 0.20 -7.92 16 11 C -0.13 -5.82 9.38 22.30 0.21 -5.61 16 12 C -0.01 -0.29 6.73 41.91 0.28 -0.01 16 13 C -0.08 -3.01 5.89 -19.93 -0.12 -3.12 16 14 C -0.05 -1.87 9.63 22.46 0.22 -1.65 16 15 C -0.17 -4.85 9.15 22.23 0.20 -4.64 16 16 C 0.27 8.25 6.40 133.18 0.85 9.10 16 17 N -0.47 -11.55 4.74 -700.87 -3.32 -14.88 16 18 C 0.02 0.35 5.39 86.32 0.47 0.82 16 19 C 0.07 0.99 7.01 72.02 0.50 1.49 16 20 O -0.40 -7.93 10.83 -148.98 -1.61 -9.54 16 21 C 0.07 1.15 7.01 72.02 0.50 1.66 16 22 C 0.03 0.76 4.81 86.31 0.42 1.17 16 23 N -0.52 -17.63 8.67 -192.17 -1.67 -19.29 16 24 C 0.10 3.77 10.59 85.03 0.90 4.67 16 25 N -0.46 -22.06 9.47 -182.75 -1.73 -23.79 16 26 C -0.03 -1.69 10.97 85.44 0.94 -0.76 16 27 H 0.30 12.78 8.30 -92.71 -0.77 12.01 16 28 H 0.12 6.10 6.21 -2.91 -0.02 6.08 16 29 H 0.13 4.97 6.20 -2.91 -0.02 4.95 16 30 H 0.14 4.80 7.61 -2.91 -0.02 4.78 16 31 H 0.16 3.47 7.17 -2.91 -0.02 3.45 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.72 6.80 -2.39 -0.02 1.70 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 2.14 7.85 -2.39 -0.02 2.12 16 39 H 0.04 1.07 8.02 -2.38 -0.02 1.06 16 40 H 0.16 5.38 6.19 -2.91 -0.02 5.37 16 41 H 0.14 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -60.16 338.08 1.10 -59.06 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 1.06 Total: 33.83 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 6.11 Total: -23.31 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -6.48 Total: -96.50 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.61 Total: -9.54 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Total: -60.16 1.10 -59.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240993010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.656 kcal (2) G-P(sol) polarization free energy of solvation -60.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds