Wall clock time and date at job start Fri Apr 10 2020 22:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99481 * 2 1 4 4 H 1.48508 * 109.46757 * 180.27440 * 3 2 1 5 5 H 1.48492 * 109.47323 * 300.27412 * 3 2 1 6 6 H 1.48501 * 109.47344 * 60.27737 * 3 2 1 7 7 C 1.40065 * 120.00206 * 180.27463 * 2 1 3 8 8 H 1.07999 * 119.99981 * 179.72749 * 7 2 1 9 9 C 1.40920 * 119.99803 * 359.72516 * 7 2 1 10 10 C 1.40918 * 119.67335 * 180.02562 * 9 7 2 11 11 C 1.36613 * 119.26111 * 180.02562 * 10 9 7 12 12 C 1.40349 * 118.60738 * 359.97438 * 11 10 9 13 13 C 1.47840 * 120.35083 * 180.02562 * 12 11 10 14 14 C 1.40286 * 120.47337 * 180.02562 * 13 12 11 15 15 C 1.36912 * 118.49269 * 180.02562 * 14 13 12 16 16 C 1.39373 * 119.38766 * 0.02562 * 15 14 13 17 17 N 1.38701 * 119.54107 * 179.97438 * 16 15 14 18 18 C 1.47003 * 110.99706 * 303.63414 * 17 16 15 19 19 C 1.53105 * 109.25631 * 177.60782 * 18 17 16 20 20 O 1.43013 * 109.25830 * 56.84741 * 19 18 17 21 21 C 1.43017 * 113.73872 * 301.32926 * 20 19 18 22 22 C 1.47019 * 110.99854 * 179.97438 * 17 16 15 23 23 N 1.32561 * 120.92198 * 359.97248 * 16 15 14 24 24 C 1.31737 * 121.63536 * 359.75309 * 23 16 15 25 25 C 1.40166 * 119.29600 * 0.02562 * 12 11 10 26 26 N 1.31174 * 120.67551 * 359.71567 * 25 12 11 27 27 H 0.97000 * 119.99861 * 359.72757 * 1 2 3 28 28 H 1.07999 * 120.36726 * 359.97438 * 10 9 7 29 29 H 1.08003 * 120.69748 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.75279 * 0.02562 * 14 13 12 31 31 H 1.08002 * 120.30547 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.51119 * 297.53502 * 18 17 16 33 33 H 1.09001 * 109.51550 * 57.67170 * 18 17 16 34 34 H 1.09003 * 109.50386 * 296.91342 * 19 18 17 35 35 H 1.09000 * 109.54098 * 176.80140 * 19 18 17 36 36 H 1.09000 * 109.50456 * 298.73594 * 21 20 19 37 37 H 1.08997 * 109.54217 * 178.62903 * 21 20 19 38 38 H 1.09000 * 109.50498 * 302.32492 * 22 17 16 39 39 H 1.08997 * 109.50542 * 62.41661 * 22 17 16 40 40 H 1.08002 * 119.74730 * 180.28512 * 24 23 16 41 41 H 1.08002 * 119.65739 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0067 5 1 1.8775 2.3994 -1.2091 6 1 1.8876 2.3936 1.2159 7 6 2.0078 -1.2130 -0.0058 8 1 3.0878 -1.2129 -0.0103 9 6 1.3032 -2.4334 -0.0058 10 6 2.0148 -3.6497 -0.0111 11 6 1.3232 -4.8279 -0.0116 12 6 -0.0796 -4.7837 -0.0062 13 6 -0.8664 -6.0353 -0.0060 14 6 -2.2686 -5.9942 -0.0011 15 6 -2.9568 -7.1778 -0.0005 16 6 -2.2507 -8.3794 -0.0042 17 7 -2.9447 -9.5803 -0.0031 18 6 -3.8625 -9.6573 1.1427 19 6 -4.6492 -10.9689 1.0722 20 8 -3.7335 -12.0669 1.0373 21 6 -2.8251 -12.0240 -0.0665 22 6 -2.0199 -10.7232 -0.0080 23 7 -0.9252 -8.3906 -0.0088 24 6 -0.2248 -7.2749 -0.0149 25 6 -0.7266 -3.5403 -0.0011 26 7 -0.0347 -2.4259 0.0043 27 1 -0.4850 0.8400 0.0040 28 1 3.0947 -3.6505 -0.0156 29 1 1.8450 -5.7735 -0.0152 30 1 -2.7934 -5.0502 0.0021 31 1 -4.0368 -7.1802 0.0036 32 1 -3.2906 -9.6254 2.0700 33 1 -4.5545 -8.8157 1.1120 34 1 -5.2624 -10.9775 0.1711 35 1 -5.2901 -11.0572 1.9495 36 1 -3.3853 -12.0634 -1.0007 37 1 -2.1461 -12.8750 -0.0131 38 1 -1.3671 -10.6594 -0.8787 39 1 -1.4176 -10.7080 0.9003 40 1 0.8543 -7.3196 -0.0231 41 1 -1.8058 -3.4995 0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240995982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:22 Heat of formation + Delta-G solvation = 37.596575 kcal Electronic energy + Delta-G solvation = -24212.982726 eV Core-core repulsion = 20671.920503 eV Total energy + Delta-G solvation = -3541.062224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58426 -39.10496 -38.11736 -35.75165 -33.98413 -32.48460 -31.64212 -31.23058 -30.53355 -29.04404 -27.09099 -25.32584 -24.61025 -23.12152 -22.58342 -21.32563 -20.87156 -20.21667 -17.88664 -17.64960 -16.47970 -16.00171 -15.93834 -15.57137 -15.38214 -15.06238 -14.99664 -14.48468 -14.40230 -13.90168 -13.70468 -13.30294 -13.09149 -12.69854 -12.47286 -12.35082 -12.26976 -11.93156 -11.64036 -11.55103 -11.40807 -11.15227 -10.95702 -10.85716 -10.54566 -10.24294 -10.12040 -9.86623 -9.46070 -9.42284 -9.17422 -8.56910 -8.24243 -7.76092 -7.15800 -6.67259 -4.71130 1.30206 1.71473 2.63977 2.93757 2.94767 2.99187 3.05069 3.50396 3.68302 3.73997 4.22988 4.55625 4.61621 4.76899 4.85680 4.94241 5.07895 5.13374 5.29276 5.33351 5.42424 5.44450 5.48915 5.57932 5.66936 5.72470 5.83443 5.87864 5.89803 5.96540 6.12004 6.32435 6.51389 6.59376 6.67889 6.80607 6.84529 6.85028 6.90897 7.16733 7.34993 7.44095 7.58156 7.80283 7.96696 8.35803 8.38476 8.66108 9.86109 10.02156 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.046265 B = 0.002385 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.062373 B =11738.365038 C =12219.566720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.061 3.939 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.401 4.401 8 H 0.090 0.910 9 C 0.249 3.751 10 C -0.269 4.269 11 C -0.035 4.035 12 C -0.275 4.275 13 C -0.029 4.029 14 C -0.090 4.090 15 C -0.161 4.161 16 C 0.251 3.749 17 N -0.473 5.473 18 C 0.021 3.979 19 C 0.065 3.935 20 O -0.387 6.387 21 C 0.060 3.940 22 C 0.033 3.967 23 N -0.505 5.505 24 C 0.084 3.916 25 C 0.159 3.841 26 N -0.488 5.488 27 H 0.278 0.722 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.151 0.849 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -13.173 0.762 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.167 4.167 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.430 4.430 8 H 0.108 0.892 9 C 0.127 3.873 10 C -0.291 4.291 11 C -0.058 4.058 12 C -0.281 4.281 13 C -0.033 4.033 14 C -0.115 4.115 15 C -0.184 4.184 16 C 0.021 3.979 17 N -0.193 5.193 18 C -0.106 4.106 19 C -0.012 4.012 20 O -0.305 6.305 21 C -0.017 4.017 22 C -0.095 4.095 23 N -0.218 5.218 24 C -0.074 4.074 25 C -0.011 4.011 26 N -0.199 5.199 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.168 0.832 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.974 -13.172 0.486 14.913 hybrid contribution 0.830 1.006 0.345 1.349 sum -6.145 -12.166 0.831 13.655 Atomic orbital electron populations 1.70137 1.07419 1.28445 1.25582 1.26230 0.95066 1.01650 0.93735 0.86170 0.80858 0.80468 0.78884 1.18116 1.19511 1.19511 1.19860 0.94799 0.89578 1.38793 0.89217 1.18686 0.88575 0.91999 0.88045 1.21433 0.98992 0.93495 1.15227 1.20629 0.92934 0.96828 0.95455 1.18872 0.93062 0.91962 1.24222 1.19751 0.93051 0.94222 0.96243 1.21213 0.93666 0.97970 0.98692 1.21060 1.00313 0.91692 1.05305 1.19481 0.88565 0.89600 1.00292 1.59414 1.18927 1.00968 1.39980 1.22941 0.96235 0.99872 0.91564 1.22681 0.91261 0.84648 1.02650 1.87978 1.48096 1.45886 1.48586 1.22789 0.91980 0.97270 0.89631 1.22581 0.94285 0.88901 1.03690 1.67380 1.06785 1.32277 1.15363 1.22516 0.99371 0.86519 0.98995 1.22754 0.98623 0.87871 0.91843 1.68804 1.07087 1.26276 1.17758 0.91084 0.87973 0.88250 0.84941 0.85648 0.93090 0.88957 0.92096 0.88137 0.92360 0.88221 0.88780 0.92595 0.83212 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.36 11.44 55.55 0.64 -16.73 16 2 C 0.06 1.44 5.50 -17.33 -0.10 1.35 16 3 Si 0.91 17.23 29.56 -169.99 -5.02 12.21 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.40 -10.01 9.11 -37.88 -0.35 -10.36 16 8 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.25 6.44 6.55 -84.98 -0.56 5.88 16 10 C -0.27 -6.22 9.76 -39.15 -0.38 -6.60 16 11 C -0.04 -0.75 9.47 -39.37 -0.37 -1.13 16 12 C -0.27 -5.87 5.92 -104.45 -0.62 -6.48 16 13 C -0.03 -0.54 5.90 -104.70 -0.62 -1.16 16 14 C -0.09 -1.49 9.49 -39.29 -0.37 -1.87 16 15 C -0.16 -2.44 9.15 -39.64 -0.36 -2.80 16 16 C 0.25 3.98 6.40 -155.09 -0.99 2.99 16 17 N -0.47 -6.33 4.74 -172.87 -0.82 -7.15 16 18 C 0.02 0.23 5.39 -3.71 -0.02 0.21 16 19 C 0.06 0.60 7.01 37.21 0.26 0.86 16 20 O -0.39 -4.38 10.83 -35.23 -0.38 -4.76 16 21 C 0.06 0.61 7.01 37.21 0.26 0.87 16 22 C 0.03 0.41 4.81 -3.71 -0.02 0.39 16 23 N -0.51 -8.69 8.67 -12.08 -0.10 -8.79 16 24 C 0.08 1.49 10.62 -17.09 -0.18 1.31 16 25 C 0.16 3.66 10.62 -17.11 -0.18 3.47 16 26 N -0.49 -12.74 7.83 -10.83 -0.08 -12.83 16 27 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.10 1.81 6.32 -52.48 -0.33 1.48 16 30 H 0.13 2.03 6.32 -52.49 -0.33 1.70 16 31 H 0.13 1.55 7.17 -52.49 -0.38 1.18 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.89 6.80 -51.93 -0.35 0.53 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.21 7.85 -51.93 -0.41 0.81 16 39 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 40 H 0.15 2.46 6.26 -52.49 -0.33 2.13 16 41 H 0.12 2.47 6.27 -52.49 -0.33 2.15 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -28.74 337.01 -10.25 -38.99 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.96 Total: 7.04 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -4.60 Total: -13.06 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.37 Total: -45.50 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.38 Total: -4.76 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.02 Total: 12.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.74 -10.25 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240995982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.588 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds