Wall clock time and date at job start Fri Apr 10 2020 22:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99481 * 2 1 4 4 H 1.48508 * 109.46757 * 180.27440 * 3 2 1 5 5 H 1.48492 * 109.47323 * 300.27412 * 3 2 1 6 6 H 1.48501 * 109.47344 * 60.27737 * 3 2 1 7 7 C 1.40065 * 120.00206 * 180.27463 * 2 1 3 8 8 H 1.07999 * 119.99981 * 179.72749 * 7 2 1 9 9 C 1.40920 * 119.99803 * 359.72516 * 7 2 1 10 10 C 1.40918 * 119.67335 * 180.02562 * 9 7 2 11 11 C 1.36613 * 119.26111 * 180.02562 * 10 9 7 12 12 C 1.40349 * 118.60738 * 359.97438 * 11 10 9 13 13 C 1.47840 * 120.35083 * 180.02562 * 12 11 10 14 14 C 1.40286 * 120.47337 * 180.02562 * 13 12 11 15 15 C 1.36912 * 118.49269 * 180.02562 * 14 13 12 16 16 C 1.39373 * 119.38766 * 0.02562 * 15 14 13 17 17 N 1.38701 * 119.54107 * 179.97438 * 16 15 14 18 18 C 1.47003 * 110.99706 * 303.63414 * 17 16 15 19 19 C 1.53105 * 109.25631 * 177.60782 * 18 17 16 20 20 O 1.43013 * 109.25830 * 56.84741 * 19 18 17 21 21 C 1.43017 * 113.73872 * 301.32926 * 20 19 18 22 22 C 1.47019 * 110.99854 * 179.97438 * 17 16 15 23 23 N 1.32561 * 120.92198 * 359.97248 * 16 15 14 24 24 C 1.31737 * 121.63536 * 359.75309 * 23 16 15 25 25 C 1.40166 * 119.29600 * 0.02562 * 12 11 10 26 26 N 1.31174 * 120.67551 * 359.71567 * 25 12 11 27 27 H 0.97000 * 119.99861 * 359.72757 * 1 2 3 28 28 H 1.07999 * 120.36726 * 359.97438 * 10 9 7 29 29 H 1.08003 * 120.69748 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.75279 * 0.02562 * 14 13 12 31 31 H 1.08002 * 120.30547 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.51119 * 297.53502 * 18 17 16 33 33 H 1.09001 * 109.51550 * 57.67170 * 18 17 16 34 34 H 1.09003 * 109.50386 * 296.91342 * 19 18 17 35 35 H 1.09000 * 109.54098 * 176.80140 * 19 18 17 36 36 H 1.09000 * 109.50456 * 298.73594 * 21 20 19 37 37 H 1.08997 * 109.54217 * 178.62903 * 21 20 19 38 38 H 1.09000 * 109.50498 * 302.32492 * 22 17 16 39 39 H 1.08997 * 109.50542 * 62.41661 * 22 17 16 40 40 H 1.08002 * 119.74730 * 180.28512 * 24 23 16 41 41 H 1.08002 * 119.65739 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0067 5 1 1.8775 2.3994 -1.2091 6 1 1.8876 2.3936 1.2159 7 6 2.0078 -1.2130 -0.0058 8 1 3.0878 -1.2129 -0.0103 9 6 1.3032 -2.4334 -0.0058 10 6 2.0148 -3.6497 -0.0111 11 6 1.3232 -4.8279 -0.0116 12 6 -0.0796 -4.7837 -0.0062 13 6 -0.8664 -6.0353 -0.0060 14 6 -2.2686 -5.9942 -0.0011 15 6 -2.9568 -7.1778 -0.0005 16 6 -2.2507 -8.3794 -0.0042 17 7 -2.9447 -9.5803 -0.0031 18 6 -3.8625 -9.6573 1.1427 19 6 -4.6492 -10.9689 1.0722 20 8 -3.7335 -12.0669 1.0373 21 6 -2.8251 -12.0240 -0.0665 22 6 -2.0199 -10.7232 -0.0080 23 7 -0.9252 -8.3906 -0.0088 24 6 -0.2248 -7.2749 -0.0149 25 6 -0.7266 -3.5403 -0.0011 26 7 -0.0347 -2.4259 0.0043 27 1 -0.4850 0.8400 0.0040 28 1 3.0947 -3.6505 -0.0156 29 1 1.8450 -5.7735 -0.0152 30 1 -2.7934 -5.0502 0.0021 31 1 -4.0368 -7.1802 0.0036 32 1 -3.2906 -9.6254 2.0700 33 1 -4.5545 -8.8157 1.1120 34 1 -5.2624 -10.9775 0.1711 35 1 -5.2901 -11.0572 1.9495 36 1 -3.3853 -12.0634 -1.0007 37 1 -2.1461 -12.8750 -0.0131 38 1 -1.3671 -10.6594 -0.8787 39 1 -1.4176 -10.7080 0.9003 40 1 0.8543 -7.3196 -0.0231 41 1 -1.8058 -3.4995 0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240995982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:21 Heat of formation + Delta-G solvation = 20.852028 kcal Electronic energy + Delta-G solvation = -24213.708824 eV Core-core repulsion = 20671.920503 eV Total energy + Delta-G solvation = -3541.788322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77133 -40.38670 -39.60363 -36.87268 -35.63970 -33.85381 -33.13315 -32.41163 -31.97573 -30.48437 -28.37198 -26.81541 -25.70035 -24.43269 -24.02160 -22.82914 -22.26719 -21.38285 -19.53970 -18.85589 -17.67659 -17.51509 -17.06086 -16.89830 -16.49977 -16.15579 -15.95026 -15.86293 -15.77145 -15.30304 -15.05698 -14.66228 -14.52924 -14.12320 -14.02913 -13.78823 -13.56999 -13.23660 -12.92952 -12.72964 -12.69384 -12.54015 -12.37866 -12.10384 -11.76039 -11.71162 -11.56995 -11.10902 -10.86777 -10.57648 -10.51039 -10.22910 -9.77221 -9.52691 -8.68326 -8.39635 -6.51894 -0.12395 0.38889 1.00037 1.21877 1.40018 1.54353 1.55741 2.18264 2.41085 2.71564 2.91090 3.04738 3.44844 3.83826 3.89841 3.91705 3.98444 4.06607 4.11917 4.15040 4.21333 4.23906 4.27674 4.33899 4.36112 4.56364 4.70445 4.72480 4.79771 4.83968 4.90457 4.93529 4.97176 5.09184 5.11191 5.28612 5.41792 5.50750 5.63573 5.71846 5.87407 6.05372 6.12550 6.15824 6.20353 6.61325 6.86041 7.05098 8.09402 8.32868 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.046265 B = 0.002385 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.062373 B =11738.365038 C =12219.566720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.019 3.981 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.443 4.443 8 H 0.095 0.905 9 C 0.218 3.782 10 C -0.286 4.286 11 C -0.040 4.040 12 C -0.260 4.260 13 C -0.061 4.061 14 C -0.083 4.083 15 C -0.161 4.161 16 C 0.261 3.739 17 N -0.475 5.475 18 C 0.019 3.981 19 C 0.065 3.935 20 O -0.402 6.402 21 C 0.066 3.934 22 C 0.034 3.966 23 N -0.521 5.521 24 C 0.088 3.912 25 C 0.135 3.865 26 N -0.521 5.521 27 H 0.283 0.717 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.038 0.962 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.159 0.841 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -15.075 0.798 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.204 4.204 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.113 0.887 9 C 0.095 3.905 10 C -0.308 4.308 11 C -0.063 4.063 12 C -0.266 4.266 13 C -0.065 4.065 14 C -0.108 4.108 15 C -0.183 4.183 16 C 0.029 3.971 17 N -0.194 5.194 18 C -0.107 4.107 19 C -0.012 4.012 20 O -0.321 6.321 21 C -0.011 4.011 22 C -0.093 4.093 23 N -0.235 5.235 24 C -0.069 4.069 25 C -0.033 4.033 26 N -0.234 5.234 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.176 0.824 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.349 -15.126 0.526 17.285 hybrid contribution 1.030 1.158 0.331 1.585 sum -7.319 -13.968 0.857 15.793 Atomic orbital electron populations 1.70219 1.09044 1.29630 1.27371 1.27125 0.95814 1.04893 0.92596 0.85021 0.79461 0.75523 0.78941 1.17492 1.18984 1.18962 1.20158 0.95277 0.90465 1.41403 0.88658 1.19125 0.89011 0.93421 0.88980 1.21622 0.99772 0.93507 1.15894 1.20979 0.93206 0.97532 0.94558 1.19122 0.93470 0.92585 1.21424 1.19682 0.93947 0.93361 0.99466 1.21429 0.92996 0.99246 0.97166 1.21350 1.01938 0.90617 1.04370 1.19979 0.88423 0.91031 0.97677 1.59454 1.18817 1.00269 1.40881 1.23091 0.95897 1.01886 0.89830 1.22859 0.90870 0.82987 1.04442 1.87971 1.48480 1.46609 1.49048 1.22837 0.92034 0.96417 0.89841 1.22600 0.94410 0.89818 1.02490 1.67473 1.07647 1.31873 1.16468 1.22654 0.99985 0.86346 0.97930 1.23118 0.99548 0.88080 0.92527 1.68743 1.07681 1.27915 1.19026 0.90567 0.86747 0.85211 0.83860 0.82378 0.94337 0.87169 0.90939 0.85736 0.91373 0.86394 0.89555 0.94224 0.82394 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.55 11.44 21.85 0.25 -38.30 16 2 C 0.02 0.93 5.50 85.30 0.47 1.40 16 3 Si 0.99 36.21 29.56 68.60 2.03 38.23 16 4 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.44 -23.11 9.11 23.37 0.21 -22.90 16 8 H 0.10 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.22 11.74 6.55 40.16 0.26 12.00 16 10 C -0.29 -13.57 9.76 22.55 0.22 -13.35 16 11 C -0.04 -1.69 9.47 22.40 0.21 -1.47 16 12 C -0.26 -11.12 5.92 -19.75 -0.12 -11.23 16 13 C -0.06 -2.21 5.90 -19.91 -0.12 -2.33 16 14 C -0.08 -2.60 9.49 22.46 0.21 -2.39 16 15 C -0.16 -4.38 9.15 22.23 0.20 -4.17 16 16 C 0.26 7.62 6.40 133.18 0.85 8.47 16 17 N -0.48 -11.40 4.74 -700.83 -3.32 -14.72 16 18 C 0.02 0.36 5.39 86.32 0.47 0.82 16 19 C 0.07 0.97 7.01 72.02 0.50 1.48 16 20 O -0.40 -7.88 10.83 -148.98 -1.61 -9.50 16 21 C 0.07 1.14 7.01 72.01 0.50 1.64 16 22 C 0.03 0.78 4.81 86.31 0.42 1.20 16 23 N -0.52 -17.06 8.67 -192.12 -1.67 -18.72 16 24 C 0.09 3.01 10.62 85.03 0.90 3.91 16 25 C 0.13 6.34 10.62 85.26 0.91 7.24 16 26 N -0.52 -28.37 7.83 -188.18 -1.47 -29.84 16 27 H 0.28 13.15 8.29 -92.71 -0.77 12.38 16 28 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.13 4.59 6.32 -2.91 -0.02 4.57 16 30 H 0.14 4.14 6.32 -2.91 -0.02 4.12 16 31 H 0.16 3.24 7.17 -2.91 -0.02 3.22 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 1.67 6.80 -2.39 -0.02 1.65 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.09 7.85 -2.39 -0.02 2.07 16 39 H 0.04 1.04 8.02 -2.39 -0.02 1.02 16 40 H 0.16 4.98 6.26 -2.91 -0.02 4.96 16 41 H 0.14 5.74 6.27 -2.91 -0.02 5.72 16 Total: -1.00 -64.41 337.01 1.37 -63.03 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 1.06 Total: 29.49 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 6.11 Total: -19.68 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -6.21 Total: -101.59 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.61 Total: -9.50 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.23 kcal Total: -64.41 1.37 -63.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240995982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.886 kcal (2) G-P(sol) polarization free energy of solvation -64.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds