Wall clock time and date at job start Fri Apr 10 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86805 * 119.99808 * 2 1 4 4 H 1.48495 * 109.46991 * 240.00249 * 3 2 1 5 5 H 1.48505 * 109.46691 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46873 * 119.99931 * 3 2 1 7 7 C 1.39928 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00028 * 197.54759 * 7 2 1 9 9 C 1.41437 * 120.00294 * 17.55422 * 7 2 1 10 10 C 1.40813 * 120.60561 * 203.51452 * 9 7 2 11 11 N 1.31494 * 120.66833 * 179.97438 * 10 9 7 12 12 C 1.31933 * 122.12175 * 359.75338 * 11 10 9 13 13 C 1.39688 * 121.14989 * 0.53928 * 12 11 10 14 14 C 1.48383 * 120.41477 * 179.72487 * 13 12 11 15 15 C 1.39967 * 120.45329 * 359.70014 * 14 13 12 16 16 C 1.38059 * 118.40222 * 180.02562 * 15 14 13 17 17 C 1.39241 * 119.22108 * 0.02562 * 16 15 14 18 18 N 1.38918 * 119.57112 * 180.02562 * 17 16 15 19 19 C 1.47009 * 111.00201 * 303.63302 * 18 17 16 20 20 C 1.53098 * 109.25876 * 177.61055 * 19 18 17 21 21 O 1.43016 * 109.25758 * 56.84655 * 20 19 18 22 22 C 1.43012 * 113.74063 * 301.33288 * 21 20 19 23 23 C 1.47019 * 110.99466 * 179.97438 * 18 17 16 24 24 N 1.32439 * 120.84616 * 359.72192 * 17 16 15 25 25 C 1.31814 * 121.74623 * 0.57347 * 24 17 16 26 26 C 1.39193 * 119.17471 * 359.44927 * 13 12 11 27 27 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.66413 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.42675 * 180.26622 * 12 11 10 30 30 H 1.07998 * 120.79305 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.38628 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.50828 * 297.54577 * 19 18 17 33 33 H 1.08996 * 109.50448 * 57.67697 * 19 18 17 34 34 H 1.09001 * 109.50531 * 296.91885 * 20 19 18 35 35 H 1.08996 * 109.54374 * 176.80278 * 20 19 18 36 36 H 1.08999 * 109.50528 * 298.72949 * 22 21 20 37 37 H 1.09006 * 109.54394 * 178.62555 * 22 21 20 38 38 H 1.09001 * 109.50621 * 302.32860 * 23 18 17 39 39 H 1.09000 * 109.50835 * 62.41749 * 23 18 17 40 40 H 1.08004 * 119.65086 * 179.71241 * 25 24 17 41 41 H 1.08003 * 120.94983 * 180.29591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0503 -1.2335 0.2826 9 6 1.3502 -2.4084 -0.3683 10 6 1.8306 -3.6561 0.0736 11 7 1.2198 -4.7693 -0.2682 12 6 0.1402 -4.7727 -1.0266 13 6 -0.4031 -3.5823 -1.5156 14 6 -1.6144 -3.6056 -2.3723 15 6 -2.2239 -4.8206 -2.7061 16 6 -3.3487 -4.7930 -3.5063 17 6 -3.8359 -3.5671 -3.9520 18 7 -4.9674 -3.5308 -4.7570 19 6 -4.7829 -4.3515 -5.9627 20 6 -6.0713 -4.3313 -6.7894 21 8 -6.4097 -2.9775 -7.1024 22 6 -6.5974 -2.1500 -5.9512 23 6 -5.3146 -2.1480 -5.1156 24 7 -3.2378 -2.4350 -3.6134 25 6 -2.1590 -2.4200 -2.8562 26 6 0.2026 -2.3736 -1.1846 27 1 -0.4850 0.8400 -0.0004 28 1 2.7096 -3.6992 0.6996 29 1 -0.3292 -5.7125 -1.2773 30 1 -1.8239 -5.7570 -2.3464 31 1 -3.8443 -5.7115 -3.7838 32 1 -3.9632 -3.9469 -6.5563 33 1 -4.5521 -5.3767 -5.6733 34 1 -6.8792 -4.7849 -6.2152 35 1 -5.9213 -4.8917 -7.7121 36 1 -7.4207 -2.5402 -5.3529 37 1 -6.8276 -1.1324 -6.2672 38 1 -5.4719 -1.5652 -4.2080 39 1 -4.5032 -1.7075 -5.6950 40 1 -1.6958 -1.4774 -2.6045 41 1 -0.1961 -1.4360 -1.5430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240996306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:26 Heat of formation + Delta-G solvation = 28.436862 kcal Electronic energy + Delta-G solvation = -24610.400185 eV Core-core repulsion = 21068.940766 eV Total energy + Delta-G solvation = -3541.459419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69189 -39.19791 -38.17968 -35.81112 -34.21550 -32.75405 -31.84937 -31.20497 -30.39214 -28.81721 -26.51511 -25.86622 -24.69536 -23.12998 -22.86067 -21.31525 -20.87369 -20.27657 -17.86826 -17.46759 -16.53954 -16.06599 -15.96984 -15.56240 -15.26641 -15.19872 -15.07279 -14.90446 -14.43597 -14.09315 -13.71721 -13.39993 -13.17966 -12.87575 -12.52182 -12.39406 -12.15489 -11.72325 -11.64395 -11.59537 -11.48095 -11.36853 -11.02115 -10.88681 -10.67867 -10.29337 -9.99064 -9.83687 -9.52313 -9.48786 -9.28192 -8.65986 -8.19352 -7.94565 -7.21947 -6.94173 -4.61037 1.15940 1.56874 2.59565 2.85742 2.96927 2.98609 3.11511 3.40245 3.63585 3.77372 4.13921 4.48212 4.52756 4.70763 4.79783 4.89944 5.02427 5.09421 5.18896 5.23718 5.33794 5.35977 5.40263 5.45427 5.54716 5.57497 5.77183 5.85944 5.89123 5.94010 6.22152 6.31555 6.44476 6.60087 6.64033 6.71423 6.86798 6.91355 6.97181 7.09210 7.25929 7.52932 7.71232 7.77668 8.23161 8.31041 8.54819 8.57367 9.49608 9.94482 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.003316 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.697180 B = 8441.870838 C = 9861.128942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.062 3.938 10 C -0.016 4.016 11 N -0.468 5.468 12 C -0.027 4.027 13 C -0.087 4.087 14 C -0.077 4.077 15 C -0.059 4.059 16 C -0.180 4.180 17 C 0.282 3.718 18 N -0.476 5.476 19 C 0.021 3.979 20 C 0.065 3.935 21 O -0.386 6.386 22 C 0.060 3.940 23 C 0.031 3.969 24 N -0.514 5.514 25 C 0.128 3.872 26 C -0.118 4.118 27 H 0.286 0.714 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.163 0.837 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 -3.507 -10.338 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.058 3.942 10 C -0.177 4.177 11 N -0.175 5.175 12 C -0.184 4.184 13 C -0.090 4.090 14 C -0.080 4.080 15 C -0.085 4.085 16 C -0.203 4.203 17 C 0.051 3.949 18 N -0.195 5.195 19 C -0.106 4.106 20 C -0.012 4.012 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.097 4.097 24 N -0.227 5.227 25 C -0.029 4.029 26 C -0.144 4.144 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.180 0.820 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.320 -3.479 -10.303 15.697 hybrid contribution 0.934 1.034 0.147 1.401 sum -10.386 -2.445 -10.156 14.730 Atomic orbital electron populations 1.69760 1.07695 1.29996 1.33812 1.25980 0.94818 1.01685 0.91939 0.86270 0.80148 0.79672 0.80219 1.18613 1.20119 1.18758 1.19551 0.98239 0.90775 1.39153 0.89726 1.18455 0.92066 0.93776 0.89900 1.22565 1.02508 0.87999 1.04618 1.66935 1.07697 1.31982 1.10865 1.21719 0.97025 0.95238 1.04455 1.19272 0.94642 0.95695 0.99384 1.19855 0.96491 0.93503 0.98193 1.21534 0.93688 0.98448 0.94781 1.21348 0.98809 0.97413 1.02699 1.19672 0.89459 0.89775 0.95983 1.59424 1.30293 1.12897 1.16843 1.22948 0.98831 0.98907 0.89884 1.22680 0.95093 0.83991 0.99476 1.87986 1.90362 1.20838 1.31276 1.22795 0.96277 0.95637 0.86947 1.22632 0.97639 0.88356 1.01025 1.67497 1.10079 1.29171 1.15971 1.22792 0.90022 0.98550 0.91545 1.21801 0.97950 0.95934 0.98686 0.90292 0.85475 0.86175 0.84464 0.85173 0.92876 0.88840 0.92040 0.88036 0.92286 0.88064 0.88536 0.92341 0.82005 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.89 10.92 55.55 0.61 -18.28 16 2 C 0.08 1.75 5.18 -17.35 -0.09 1.66 16 3 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.04 9.08 -37.73 -0.34 -11.38 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 9 C 0.06 1.58 5.59 -106.71 -0.60 0.98 16 10 C -0.02 -0.38 10.96 -16.72 -0.18 -0.56 16 11 N -0.47 -11.22 10.32 -12.28 -0.13 -11.35 16 12 C -0.03 -0.59 10.61 -16.97 -0.18 -0.77 16 13 C -0.09 -1.93 5.88 -104.82 -0.62 -2.55 16 14 C -0.08 -1.48 5.89 -104.73 -0.62 -2.09 16 15 C -0.06 -0.95 9.53 -39.00 -0.37 -1.32 16 16 C -0.18 -2.62 9.21 -39.27 -0.36 -2.98 16 17 C 0.28 4.41 6.40 -155.03 -0.99 3.42 16 18 N -0.48 -6.25 4.75 -172.88 -0.82 -7.07 16 19 C 0.02 0.22 5.39 -3.71 -0.02 0.20 16 20 C 0.06 0.58 7.01 37.21 0.26 0.84 16 21 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 22 C 0.06 0.61 7.01 37.21 0.26 0.87 16 23 C 0.03 0.38 4.82 -3.71 -0.02 0.37 16 24 N -0.51 -9.08 8.68 -12.17 -0.11 -9.18 16 25 C 0.13 2.43 10.60 -17.22 -0.18 2.25 16 26 C -0.12 -2.87 8.18 -38.23 -0.31 -3.18 16 27 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 28 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 29 H 0.12 2.31 6.26 -52.48 -0.33 1.98 16 30 H 0.14 1.96 6.33 -52.49 -0.33 1.63 16 31 H 0.13 1.50 7.17 -52.49 -0.38 1.12 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.83 6.81 -51.93 -0.35 0.48 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.27 7.85 -51.93 -0.41 0.87 16 39 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 40 H 0.16 3.14 6.27 -52.48 -0.33 2.81 16 41 H 0.13 3.20 4.46 -52.48 -0.23 2.97 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -28.00 335.89 -10.02 -38.03 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.86 Total: 9.31 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -4.36 Total: -14.26 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.45 Total: -45.89 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.00 -10.02 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240996306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.466 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds