Wall clock time and date at job start Fri Apr 10 2020 22:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86805 * 119.99808 * 2 1 4 4 H 1.48495 * 109.46991 * 240.00249 * 3 2 1 5 5 H 1.48505 * 109.46691 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46873 * 119.99931 * 3 2 1 7 7 C 1.39928 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00028 * 197.54759 * 7 2 1 9 9 C 1.41437 * 120.00294 * 17.55422 * 7 2 1 10 10 C 1.40813 * 120.60561 * 203.51452 * 9 7 2 11 11 N 1.31494 * 120.66833 * 179.97438 * 10 9 7 12 12 C 1.31933 * 122.12175 * 359.75338 * 11 10 9 13 13 C 1.39688 * 121.14989 * 0.53928 * 12 11 10 14 14 C 1.48383 * 120.41477 * 179.72487 * 13 12 11 15 15 C 1.39967 * 120.45329 * 359.70014 * 14 13 12 16 16 C 1.38059 * 118.40222 * 180.02562 * 15 14 13 17 17 C 1.39241 * 119.22108 * 0.02562 * 16 15 14 18 18 N 1.38918 * 119.57112 * 180.02562 * 17 16 15 19 19 C 1.47009 * 111.00201 * 303.63302 * 18 17 16 20 20 C 1.53098 * 109.25876 * 177.61055 * 19 18 17 21 21 O 1.43016 * 109.25758 * 56.84655 * 20 19 18 22 22 C 1.43012 * 113.74063 * 301.33288 * 21 20 19 23 23 C 1.47019 * 110.99466 * 179.97438 * 18 17 16 24 24 N 1.32439 * 120.84616 * 359.72192 * 17 16 15 25 25 C 1.31814 * 121.74623 * 0.57347 * 24 17 16 26 26 C 1.39193 * 119.17471 * 359.44927 * 13 12 11 27 27 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.66413 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.42675 * 180.26622 * 12 11 10 30 30 H 1.07998 * 120.79305 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.38628 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.50828 * 297.54577 * 19 18 17 33 33 H 1.08996 * 109.50448 * 57.67697 * 19 18 17 34 34 H 1.09001 * 109.50531 * 296.91885 * 20 19 18 35 35 H 1.08996 * 109.54374 * 176.80278 * 20 19 18 36 36 H 1.08999 * 109.50528 * 298.72949 * 22 21 20 37 37 H 1.09006 * 109.54394 * 178.62555 * 22 21 20 38 38 H 1.09001 * 109.50621 * 302.32860 * 23 18 17 39 39 H 1.09000 * 109.50835 * 62.41749 * 23 18 17 40 40 H 1.08004 * 119.65086 * 179.71241 * 25 24 17 41 41 H 1.08003 * 120.94983 * 180.29591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0503 -1.2335 0.2826 9 6 1.3502 -2.4084 -0.3683 10 6 1.8306 -3.6561 0.0736 11 7 1.2198 -4.7693 -0.2682 12 6 0.1402 -4.7727 -1.0266 13 6 -0.4031 -3.5823 -1.5156 14 6 -1.6144 -3.6056 -2.3723 15 6 -2.2239 -4.8206 -2.7061 16 6 -3.3487 -4.7930 -3.5063 17 6 -3.8359 -3.5671 -3.9520 18 7 -4.9674 -3.5308 -4.7570 19 6 -4.7829 -4.3515 -5.9627 20 6 -6.0713 -4.3313 -6.7894 21 8 -6.4097 -2.9775 -7.1024 22 6 -6.5974 -2.1500 -5.9512 23 6 -5.3146 -2.1480 -5.1156 24 7 -3.2378 -2.4350 -3.6134 25 6 -2.1590 -2.4200 -2.8562 26 6 0.2026 -2.3736 -1.1846 27 1 -0.4850 0.8400 -0.0004 28 1 2.7096 -3.6992 0.6996 29 1 -0.3292 -5.7125 -1.2773 30 1 -1.8239 -5.7570 -2.3464 31 1 -3.8443 -5.7115 -3.7838 32 1 -3.9632 -3.9469 -6.5563 33 1 -4.5521 -5.3767 -5.6733 34 1 -6.8792 -4.7849 -6.2152 35 1 -5.9213 -4.8917 -7.7121 36 1 -7.4207 -2.5402 -5.3529 37 1 -6.8276 -1.1324 -6.2672 38 1 -5.4719 -1.5652 -4.2080 39 1 -4.5032 -1.7075 -5.6950 40 1 -1.6958 -1.4774 -2.6045 41 1 -0.1961 -1.4360 -1.5430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240996306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:25 Heat of formation + Delta-G solvation = 12.010233 kcal Electronic energy + Delta-G solvation = -24611.112497 eV Core-core repulsion = 21068.940766 eV Total energy + Delta-G solvation = -3542.171731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87460 -40.47767 -39.67047 -36.89296 -36.00194 -34.16524 -33.17368 -32.31088 -32.01219 -30.15415 -27.72517 -27.60387 -25.79801 -24.49066 -24.17919 -22.89786 -22.24730 -21.45542 -19.29517 -18.90158 -17.75856 -17.62178 -17.13409 -16.87317 -16.54020 -16.43736 -16.16781 -15.96735 -15.79989 -15.39538 -15.07728 -14.77560 -14.61019 -14.23941 -14.11683 -13.74838 -13.39442 -13.20760 -13.16730 -13.12380 -12.65207 -12.56711 -12.39677 -12.21681 -11.74665 -11.71865 -11.52311 -11.22766 -10.97450 -10.67887 -10.58552 -10.14556 -9.92297 -9.72027 -8.80817 -8.63038 -6.48476 -0.27941 0.26771 0.89159 1.14281 1.38198 1.49107 1.53552 2.16213 2.31611 2.63568 2.88261 2.90208 3.34642 3.71013 3.78182 3.80884 3.91262 3.95867 4.04697 4.11571 4.12370 4.17228 4.24605 4.29279 4.48410 4.58102 4.66464 4.69646 4.77241 4.78450 4.88085 4.93768 4.96720 4.99729 5.15530 5.18274 5.37018 5.40893 5.57182 5.77573 5.87173 5.96690 6.04227 6.11171 6.44419 6.72093 6.73499 6.93644 7.65552 8.20170 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.003316 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.697180 B = 8441.870838 C = 9861.128942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.038 3.962 10 C -0.038 4.038 11 N -0.478 5.478 12 C -0.032 4.032 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.048 4.048 16 C -0.169 4.169 17 C 0.284 3.716 18 N -0.474 5.474 19 C 0.018 3.982 20 C 0.064 3.936 21 O -0.402 6.402 22 C 0.067 3.933 23 C 0.032 3.968 24 N -0.532 5.532 25 C 0.119 3.881 26 C -0.143 4.143 27 H 0.292 0.708 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.172 0.828 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.143 0.857 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 -4.798 -11.762 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.508 4.508 8 H 0.106 0.894 9 C 0.034 3.966 10 C -0.199 4.199 11 N -0.185 5.185 12 C -0.190 4.190 13 C -0.083 4.083 14 C -0.110 4.110 15 C -0.074 4.074 16 C -0.191 4.191 17 C 0.052 3.948 18 N -0.193 5.193 19 C -0.107 4.107 20 C -0.012 4.012 21 O -0.321 6.321 22 C -0.010 4.010 23 C -0.096 4.096 24 N -0.246 5.246 25 C -0.037 4.037 26 C -0.169 4.169 27 H 0.103 0.897 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.189 0.811 32 H 0.058 0.942 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.160 0.840 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.095 -4.786 -11.729 18.220 hybrid contribution 1.276 1.326 0.465 1.898 sum -11.819 -3.461 -11.264 16.690 Atomic orbital electron populations 1.69816 1.09056 1.31186 1.33981 1.26805 0.95497 1.04653 0.90914 0.85199 0.78792 0.75275 0.80258 1.18407 1.19243 1.18083 1.19829 0.98655 0.91703 1.40633 0.89436 1.18786 0.92830 0.94527 0.90504 1.22715 1.03386 0.88098 1.05689 1.66961 1.08390 1.31750 1.11354 1.22283 0.96530 0.96598 1.03614 1.19517 0.95135 0.94930 0.98679 1.19747 0.96522 0.95030 0.99740 1.21790 0.93606 0.97943 0.94046 1.21717 0.97864 0.98409 1.01133 1.20188 0.89386 0.89774 0.95465 1.59513 1.28488 1.13457 1.17836 1.23136 0.99553 0.99367 0.88679 1.22888 0.94415 0.83308 1.00625 1.87977 1.90356 1.21964 1.31769 1.22814 0.94891 0.96726 0.86554 1.22626 0.98423 0.87920 1.00603 1.67491 1.10039 1.30655 1.16367 1.22537 0.90785 0.98040 0.92385 1.21839 0.98612 0.96668 0.99757 0.89670 0.84675 0.82760 0.82102 0.81080 0.94165 0.86494 0.90772 0.85514 0.91195 0.86515 0.89814 0.94218 0.83974 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.58 10.92 21.82 0.24 -40.34 16 2 C 0.04 1.82 5.18 85.25 0.44 2.26 16 3 Si 0.98 36.31 29.59 68.60 2.03 38.34 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.48 -24.61 9.08 23.47 0.21 -24.39 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.04 2.00 5.59 -21.22 -0.12 1.88 16 10 C -0.04 -1.94 10.96 85.37 0.94 -1.00 16 11 N -0.48 -23.10 10.32 -192.76 -1.99 -25.09 16 12 C -0.03 -1.42 10.61 85.03 0.90 -0.52 16 13 C -0.08 -3.61 5.88 -20.00 -0.12 -3.73 16 14 C -0.11 -4.09 5.89 -19.94 -0.12 -4.21 16 15 C -0.05 -1.44 9.53 22.65 0.22 -1.23 16 16 C -0.17 -4.34 9.21 22.47 0.21 -4.13 16 17 C 0.28 8.37 6.40 133.11 0.85 9.23 16 18 N -0.47 -11.38 4.75 -700.86 -3.33 -14.70 16 19 C 0.02 0.33 5.39 86.32 0.47 0.79 16 20 C 0.06 0.92 7.01 72.01 0.50 1.42 16 21 O -0.40 -7.89 10.83 -148.98 -1.61 -9.50 16 22 C 0.07 1.21 7.01 72.01 0.50 1.71 16 23 C 0.03 0.76 4.82 86.31 0.42 1.18 16 24 N -0.53 -18.87 8.68 -192.43 -1.67 -20.54 16 25 C 0.12 4.67 10.60 84.92 0.90 5.57 16 26 C -0.14 -7.28 8.18 23.14 0.19 -7.09 16 27 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 28 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 29 H 0.16 5.56 6.26 -2.91 -0.02 5.55 16 30 H 0.16 3.98 6.33 -2.91 -0.02 3.96 16 31 H 0.17 2.98 7.17 -2.91 -0.02 2.96 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 1.54 6.81 -2.39 -0.02 1.52 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.08 2.20 7.85 -2.39 -0.02 2.18 16 39 H 0.04 1.10 8.03 -2.39 -0.02 1.08 16 40 H 0.14 5.98 6.27 -2.91 -0.02 5.96 16 41 H 0.12 6.36 4.46 -2.91 -0.01 6.35 16 Total: -1.00 -62.89 335.89 1.13 -61.76 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 1.07 Total: 32.35 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 6.39 Total: -22.27 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -6.75 Total: -100.68 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.61 Total: -9.50 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -62.89 1.13 -61.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240996306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.768 kcal (2) G-P(sol) polarization free energy of solvation -62.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds