Wall clock time and date at job start Fri Apr 10 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48504 * 109.47427 * 240.00569 * 3 2 1 5 5 H 1.48495 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46862 * 120.00302 * 3 2 1 7 7 C 1.40031 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.41433 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.40444 * 119.77948 * 180.27869 * 9 7 2 11 11 C 1.39356 * 118.82844 * 180.27421 * 10 9 7 12 12 C 1.48320 * 120.82455 * 179.73374 * 11 10 9 13 13 C 1.40003 * 120.45699 * 179.73977 * 12 11 10 14 14 C 1.38028 * 118.40071 * 179.97438 * 13 12 11 15 15 C 1.39265 * 119.22273 * 0.02562 * 14 13 12 16 16 N 1.38852 * 119.57007 * 179.97438 * 15 14 13 17 17 C 1.47009 * 111.00586 * 303.63844 * 16 15 14 18 18 C 1.53093 * 109.25895 * 177.60945 * 17 16 15 19 19 O 1.43013 * 109.25993 * 56.84793 * 18 17 16 20 20 C 1.43009 * 113.73978 * 301.32954 * 19 18 17 21 21 C 1.47018 * 110.99534 * 180.02562 * 16 15 14 22 22 N 1.32457 * 120.85180 * 0.02562 * 15 14 13 23 23 C 1.31790 * 121.75177 * 0.02562 * 22 15 14 24 24 C 1.40078 * 118.35399 * 359.46636 * 11 10 9 25 25 C 1.38469 * 119.41826 * 0.27196 * 24 11 10 26 26 N 1.31500 * 121.15352 * 0.02562 * 25 24 11 27 27 H 0.96997 * 119.99729 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.58398 * 0.02828 * 10 9 7 29 29 H 1.08002 * 120.79760 * 0.02562 * 13 12 11 30 30 H 1.08005 * 120.38985 * 180.28216 * 14 13 12 31 31 H 1.09003 * 109.50541 * 297.54297 * 17 16 15 32 32 H 1.09006 * 109.50760 * 57.67067 * 17 16 15 33 33 H 1.08994 * 109.50602 * 296.91083 * 18 17 16 34 34 H 1.09005 * 109.53744 * 176.80656 * 18 17 16 35 35 H 1.09004 * 109.50834 * 298.73667 * 20 19 18 36 36 H 1.08994 * 109.54582 * 178.62686 * 20 19 18 37 37 H 1.09004 * 109.50991 * 302.32855 * 21 16 15 38 38 H 1.08998 * 109.50705 * 62.41889 * 21 16 15 39 39 H 1.08001 * 119.66065 * 180.02562 * 23 22 15 40 40 H 1.08001 * 120.29060 * 180.29925 * 24 11 10 41 41 H 1.07998 * 119.42375 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6966 -1.2126 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3005 -2.4376 -0.0005 10 6 2.0075 -3.6511 0.0048 11 6 1.2909 -4.8463 -0.0011 12 6 1.9924 -6.1531 -0.0017 13 6 1.2648 -7.3492 -0.0022 14 6 1.9609 -8.5411 -0.0033 15 6 3.3533 -8.5152 -0.0033 16 7 4.0608 -9.7100 -0.0039 17 6 3.6752 -10.5513 1.1383 18 6 4.4331 -11.8795 1.0659 19 8 5.8390 -11.6193 1.0354 20 6 6.2497 -10.8031 -0.0648 21 6 5.5102 -9.4639 -0.0032 22 7 4.0113 -7.3657 -0.0018 23 6 3.3833 -6.2071 0.0003 24 6 -0.1085 -4.7829 -0.0007 25 6 -0.7334 -3.5473 -0.0003 26 7 -0.0361 -2.4323 -0.0007 27 1 -0.4849 0.8400 0.0004 28 1 3.0874 -3.6579 0.0094 29 1 0.1848 -7.3394 -0.0026 30 1 1.4319 -9.4827 -0.0083 31 1 3.9251 -10.0399 2.0679 32 1 2.6024 -10.7420 1.1042 33 1 4.1425 -12.4155 0.1624 34 1 4.1936 -12.4841 1.9407 35 1 6.0119 -11.3078 -1.0012 36 1 7.3241 -10.6284 -0.0081 37 1 5.7774 -8.8606 -0.8708 38 1 5.7891 -8.9346 0.9080 39 1 3.9537 -5.2900 0.0011 40 1 -0.6948 -5.6899 -0.0004 41 1 -1.8122 -3.4983 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240996847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:30 Heat of formation + Delta-G solvation = 40.486738 kcal Electronic energy + Delta-G solvation = -24273.070900 eV Core-core repulsion = 20732.134003 eV Total energy + Delta-G solvation = -3540.936897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77996 -39.22788 -38.05416 -35.89942 -33.80752 -32.71753 -31.88278 -31.26576 -30.04880 -29.03699 -26.74735 -25.83323 -24.76538 -23.14873 -22.93300 -21.11063 -21.01076 -20.33159 -17.95782 -17.50656 -16.67304 -16.16673 -15.73611 -15.62611 -15.31379 -15.21588 -14.87056 -14.65344 -14.46334 -13.99866 -13.65666 -13.44791 -13.10326 -13.04031 -12.61662 -12.41123 -12.25544 -11.84579 -11.69495 -11.57394 -11.25836 -11.16486 -10.96271 -10.81499 -10.54632 -10.38389 -9.98946 -9.94563 -9.60649 -9.39098 -9.26471 -8.69593 -7.75073 -7.65463 -7.40597 -6.47331 -4.60792 1.07769 1.47065 2.69606 2.91195 3.04985 3.07012 3.14499 3.35678 3.58184 3.89629 4.12201 4.40203 4.63213 4.70775 4.73558 4.83969 4.94371 5.03278 5.12885 5.15904 5.24470 5.26427 5.34780 5.36757 5.51281 5.70398 5.78201 5.81721 5.83611 6.02808 6.07921 6.30358 6.33497 6.55037 6.58396 6.65322 6.81458 6.83324 7.05606 7.13786 7.23309 7.42520 7.58798 7.88419 8.13868 8.15106 8.57088 8.82600 10.02981 10.24631 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.002630 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.816940 B =10644.970458 C =11525.773962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.430 4.430 8 H 0.084 0.916 9 C 0.255 3.745 10 C -0.253 4.253 11 C 0.004 3.996 12 C -0.086 4.086 13 C -0.052 4.052 14 C -0.182 4.182 15 C 0.286 3.714 16 N -0.476 5.476 17 C 0.021 3.979 18 C 0.065 3.935 19 O -0.386 6.386 20 C 0.060 3.940 21 C 0.031 3.969 22 N -0.516 5.516 23 C 0.128 3.872 24 C -0.306 4.306 25 C 0.126 3.874 26 N -0.482 5.482 27 H 0.274 0.726 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.161 0.839 40 H 0.096 0.904 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -17.221 0.826 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.157 4.157 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.130 3.870 10 C -0.276 4.276 11 C -0.003 4.003 12 C -0.089 4.089 13 C -0.078 4.078 14 C -0.204 4.204 15 C 0.055 3.945 16 N -0.195 5.195 17 C -0.106 4.106 18 C -0.012 4.012 19 O -0.304 6.304 20 C -0.017 4.017 21 C -0.097 4.097 22 N -0.229 5.229 23 C -0.030 4.030 24 C -0.330 4.330 25 C -0.039 4.039 26 N -0.195 5.195 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.178 0.822 40 H 0.114 0.886 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.151 -16.646 0.542 17.754 hybrid contribution -0.263 0.448 0.324 0.612 sum 5.887 -16.198 0.866 17.256 Atomic orbital electron populations 1.70119 1.07211 1.28012 1.28173 1.26077 0.94932 1.01139 0.93585 0.86376 0.80097 0.80350 0.79967 1.18860 1.20169 1.18875 1.19614 0.94285 0.89376 1.42787 0.89765 1.18536 0.88345 0.91650 0.88440 1.21832 0.98512 0.92597 1.14700 1.18403 0.93153 0.89996 0.98734 1.19955 0.94124 0.94063 1.00756 1.21577 1.00723 0.90931 0.94554 1.21386 0.92993 0.99143 1.06876 1.19682 0.90191 0.88311 0.96304 1.59401 1.06789 1.12923 1.40346 1.22959 1.01647 0.94600 0.91376 1.22682 0.80894 0.94865 1.02805 1.87990 1.23096 1.70572 1.48767 1.22797 0.99296 0.89821 0.89750 1.22641 0.85538 0.97505 1.03977 1.67496 1.40892 0.97956 1.16545 1.22746 0.91602 0.94748 0.93877 1.21290 0.93285 0.98003 1.20383 1.22456 0.98853 0.88602 0.93990 1.68743 1.07234 1.26800 1.16695 0.91455 0.87917 0.84363 0.85078 0.92807 0.88814 0.92013 0.87976 0.92264 0.88024 0.88566 0.92279 0.82155 0.88588 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.71 11.46 55.55 0.64 -18.07 16 2 C 0.07 1.71 5.50 -17.34 -0.10 1.61 16 3 Si 0.91 18.24 29.56 -169.99 -5.02 13.21 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.43 -11.21 9.14 -37.69 -0.34 -11.56 16 8 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 9 C 0.25 6.78 6.55 -85.02 -0.56 6.22 16 10 C -0.25 -5.97 9.23 -38.34 -0.35 -6.32 16 11 C 0.00 0.08 5.91 -104.64 -0.62 -0.53 16 12 C -0.09 -1.57 5.89 -104.73 -0.62 -2.19 16 13 C -0.05 -0.81 9.54 -39.00 -0.37 -1.18 16 14 C -0.18 -2.51 9.20 -39.28 -0.36 -2.87 16 15 C 0.29 4.22 6.40 -155.07 -0.99 3.23 16 16 N -0.48 -5.87 4.75 -172.88 -0.82 -6.69 16 17 C 0.02 0.21 5.39 -3.72 -0.02 0.19 16 18 C 0.06 0.54 7.01 37.21 0.26 0.80 16 19 O -0.39 -4.08 10.83 -35.23 -0.38 -4.46 16 20 C 0.06 0.56 7.01 37.21 0.26 0.83 16 21 C 0.03 0.36 4.81 -3.71 -0.02 0.34 16 22 N -0.52 -8.47 8.68 -12.18 -0.11 -8.58 16 23 C 0.13 2.23 10.61 -17.21 -0.18 2.05 16 24 C -0.31 -6.55 9.53 -38.81 -0.37 -6.92 16 25 C 0.13 2.97 11.17 -17.61 -0.20 2.77 16 26 N -0.48 -13.00 7.85 -11.21 -0.09 -13.09 16 27 H 0.27 6.51 8.29 -40.82 -0.34 6.18 16 28 H 0.10 2.20 6.35 -52.49 -0.33 1.87 16 29 H 0.14 1.93 6.40 -52.49 -0.34 1.60 16 30 H 0.13 1.43 7.18 -52.48 -0.38 1.05 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.78 6.82 -51.93 -0.35 0.43 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.17 7.85 -51.93 -0.41 0.76 16 38 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 39 H 0.16 2.68 6.30 -52.49 -0.33 2.35 16 40 H 0.10 1.76 6.38 -52.49 -0.33 1.42 16 41 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -30.00 337.53 -10.25 -40.25 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.97 Total: 5.88 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -4.58 Total: -13.54 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.38 Total: -46.43 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.38 Total: -4.46 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.00 -10.25 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240996847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.737 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds