Wall clock time and date at job start Fri Apr 10 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86797 * 120.00390 * 2 1 4 4 H 1.48500 * 109.46966 * 270.00439 * 3 2 1 5 5 H 1.48506 * 109.46966 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.47224 * 150.00179 * 3 2 1 7 7 C 1.40148 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00510 * 164.73860 * 7 2 1 9 9 C 1.40865 * 119.99971 * 344.74355 * 7 2 1 10 10 C 1.41149 * 121.10855 * 334.75809 * 9 7 2 11 11 C 1.36435 * 119.11215 * 180.29743 * 10 9 7 12 12 N 1.32240 * 121.53000 * 359.70465 * 11 10 9 13 13 C 1.31633 * 122.51804 * 0.02562 * 12 11 10 14 14 C 1.39405 * 120.64593 * 359.97438 * 13 12 11 15 15 C 1.47716 * 120.79343 * 179.97438 * 14 13 12 16 16 C 1.40337 * 120.48142 * 309.72937 * 15 14 13 17 17 C 1.36897 * 118.48962 * 180.25130 * 16 15 14 18 18 C 1.39386 * 119.39294 * 0.03918 * 17 16 15 19 19 N 1.38692 * 119.53436 * 179.97438 * 18 17 16 20 20 C 1.47019 * 111.00076 * 303.61413 * 19 18 17 21 21 C 1.53100 * 109.25725 * 177.60805 * 20 19 18 22 22 O 1.43012 * 109.25779 * 56.84646 * 21 20 19 23 23 C 1.43018 * 113.74132 * 301.33094 * 22 21 20 24 24 C 1.47020 * 110.99987 * 179.97438 * 19 18 17 25 25 N 1.32554 * 120.93158 * 359.95996 * 18 17 16 26 26 C 1.31741 * 121.64462 * 0.02562 * 25 18 17 27 27 H 0.96995 * 120.00072 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.44538 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.23051 * 179.72393 * 11 10 9 30 30 H 1.08000 * 119.67653 * 180.02562 * 13 12 11 31 31 H 1.08000 * 120.75117 * 0.25107 * 16 15 14 32 32 H 1.07999 * 120.30734 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.50316 * 297.54444 * 20 19 18 34 34 H 1.08998 * 109.50300 * 57.67542 * 20 19 18 35 35 H 1.09002 * 109.50505 * 296.91241 * 21 20 19 36 36 H 1.08995 * 109.53733 * 176.80494 * 21 20 19 37 37 H 1.08997 * 109.50565 * 298.73138 * 23 22 21 38 38 H 1.09007 * 109.53801 * 178.62794 * 23 22 21 39 39 H 1.08999 * 109.50527 * 302.32659 * 24 19 18 40 40 H 1.09002 * 109.50536 * 62.41470 * 24 19 18 41 41 H 1.07998 * 119.74962 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 2.4886 2.0463 -1.4001 5 1 1.4387 2.6526 0.7001 6 1 3.5387 1.4400 0.7000 7 6 2.0078 -1.2137 -0.0005 8 1 3.0593 -1.2302 -0.2467 9 6 1.3408 -2.4123 0.3199 10 6 0.1829 -2.4091 1.1271 11 6 -0.4274 -3.5944 1.4172 12 7 0.0376 -4.7429 0.9551 13 6 1.1086 -4.8176 0.1934 14 6 1.8084 -3.6660 -0.1636 15 6 3.0110 -3.7461 -1.0177 16 6 4.0460 -4.6416 -0.7075 17 6 5.1442 -4.6783 -1.5240 18 6 5.2030 -3.8321 -2.6301 19 7 6.3145 -3.8665 -3.4589 20 6 7.5474 -3.6182 -2.6976 21 6 8.7513 -3.7241 -3.6375 22 8 8.5878 -2.8028 -4.7190 23 6 7.3973 -3.0161 -5.4823 24 6 6.1798 -2.9030 -4.5612 25 7 4.2115 -2.9951 -2.9010 26 6 3.1369 -2.9277 -2.1419 27 1 -0.4850 0.8400 0.0004 28 1 -0.2122 -1.4812 1.5137 29 1 -1.3108 -3.5946 2.0383 30 1 1.4480 -5.7804 -0.1591 31 1 3.9777 -5.2870 0.1557 32 1 5.9577 -5.3566 -1.3131 33 1 7.5117 -2.6193 -2.2629 34 1 7.6398 -4.3586 -1.9030 35 1 8.8179 -4.7386 -4.0306 36 1 9.6631 -3.4852 -3.0903 37 1 7.4247 -4.0099 -5.9291 38 1 7.3294 -2.2650 -6.2693 39 1 5.2739 -3.1213 -5.1267 40 1 6.1215 -1.8926 -4.1563 41 1 2.3474 -2.2341 -2.3910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240997587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:33 Heat of formation + Delta-G solvation = 27.846669 kcal Electronic energy + Delta-G solvation = -25091.775119 eV Core-core repulsion = 21550.290107 eV Total energy + Delta-G solvation = -3541.485011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50612 -39.05925 -38.13754 -35.63602 -34.32605 -32.53023 -31.67407 -31.06776 -30.21196 -28.70200 -26.68413 -25.93587 -24.51387 -22.79096 -22.49187 -21.50067 -20.77721 -20.14863 -17.81407 -17.53400 -16.43868 -15.92072 -15.79053 -15.40778 -15.33602 -14.97121 -14.91232 -14.58420 -14.38080 -14.21524 -13.59944 -13.11165 -12.85447 -12.72486 -12.60207 -12.35530 -12.22922 -11.85243 -11.59213 -11.56608 -11.46296 -11.32674 -11.05557 -10.79278 -10.46364 -10.03656 -9.97376 -9.64168 -9.45476 -9.32280 -9.09254 -8.27036 -8.11153 -7.89159 -7.30645 -6.98186 -4.75541 1.52470 1.84963 2.62859 2.72622 2.93202 2.97291 3.13406 3.55466 3.72654 3.74710 4.36418 4.48234 4.64308 4.86372 4.92802 5.02314 5.18288 5.21830 5.36193 5.39283 5.47157 5.49989 5.58260 5.65168 5.68739 5.70536 5.79327 5.93983 6.04406 6.21823 6.32564 6.44104 6.64727 6.75300 6.77290 6.90113 6.93560 6.97080 7.08551 7.22046 7.36008 7.49265 7.69028 7.93340 8.27238 8.50893 8.53518 8.58232 9.49493 9.85900 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.004261 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.051300 B = 6569.019084 C = 8038.723133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.084 0.916 9 C 0.146 3.854 10 C -0.206 4.206 11 C 0.082 3.918 12 N -0.577 5.577 13 C 0.132 3.868 14 C -0.234 4.234 15 C -0.042 4.042 16 C -0.071 4.071 17 C -0.180 4.180 18 C 0.271 3.729 19 N -0.475 5.475 20 C 0.021 3.979 21 C 0.065 3.935 22 O -0.387 6.387 23 C 0.061 3.939 24 C 0.032 3.968 25 N -0.517 5.517 26 C 0.137 3.863 27 H 0.287 0.713 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.755 -2.977 -5.278 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.139 3.861 10 C -0.228 4.228 11 C -0.065 4.065 12 N -0.291 5.291 13 C -0.027 4.027 14 C -0.240 4.240 15 C -0.046 4.046 16 C -0.097 4.097 17 C -0.203 4.203 18 C 0.041 3.959 19 N -0.194 5.194 20 C -0.106 4.106 21 C -0.012 4.012 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.096 4.096 25 N -0.230 5.230 26 C -0.021 4.021 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.333 -3.347 -6.035 13.268 hybrid contribution 0.280 1.538 0.922 1.815 sum 11.613 -1.810 -5.112 12.817 Atomic orbital electron populations 1.69734 1.07747 1.30053 1.32372 1.26009 0.94768 1.01657 0.91780 0.86277 0.80693 0.80089 0.79753 1.18972 1.19717 1.18279 1.19555 0.97428 0.90494 1.39623 0.89838 1.17724 0.90193 0.91118 0.87112 1.21927 0.99970 0.98322 1.02625 1.21732 0.98122 0.88826 0.97842 1.67318 1.15797 1.29169 1.16837 1.22090 0.91309 0.95688 0.93600 1.19361 1.00787 0.95155 1.08710 1.19580 0.94330 0.95612 0.95059 1.21328 0.92108 0.97853 0.98373 1.21020 1.00465 1.02122 0.96654 1.19610 0.91699 0.93213 0.91416 1.59389 1.01009 1.48965 1.10073 1.22936 0.89041 1.01859 0.96758 1.22672 0.96939 0.93748 0.87835 1.87979 1.42371 1.55998 1.44185 1.22792 0.83546 1.01869 0.93428 1.22601 0.99320 0.94959 0.92697 1.67543 1.02837 1.20193 1.32465 1.22898 0.93615 0.96147 0.89396 0.90200 0.85520 0.86350 0.86149 0.85366 0.85776 0.92949 0.88962 0.92143 0.88177 0.92395 0.88208 0.88656 0.92381 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.27 10.92 55.56 0.61 -17.66 16 2 C 0.08 1.82 5.22 -17.31 -0.09 1.73 16 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.44 -10.63 7.33 -37.87 -0.28 -10.91 16 8 H 0.08 2.01 6.72 -52.49 -0.35 1.66 16 9 C 0.15 3.59 5.59 -106.25 -0.59 3.00 16 10 C -0.21 -5.02 8.72 -39.13 -0.34 -5.36 16 11 C 0.08 1.89 11.08 -18.03 -0.20 1.69 16 12 N -0.58 -13.49 10.32 -13.35 -0.14 -13.63 16 13 C 0.13 2.92 10.73 -17.20 -0.18 2.74 16 14 C -0.23 -5.30 5.55 -104.04 -0.58 -5.88 16 15 C -0.04 -0.86 5.00 -104.72 -0.52 -1.38 16 16 C -0.07 -1.23 9.66 -39.28 -0.38 -1.61 16 17 C -0.18 -2.85 9.15 -39.64 -0.36 -3.21 16 18 C 0.27 4.58 6.40 -155.10 -0.99 3.59 16 19 N -0.48 -6.78 4.74 -172.86 -0.82 -7.60 16 20 C 0.02 0.25 5.39 -3.71 -0.02 0.23 16 21 C 0.07 0.65 7.01 37.21 0.26 0.91 16 22 O -0.39 -4.69 10.83 -35.23 -0.38 -5.07 16 23 C 0.06 0.66 7.01 37.20 0.26 0.93 16 24 C 0.03 0.43 4.81 -3.71 -0.02 0.41 16 25 N -0.52 -9.80 8.67 -12.07 -0.10 -9.91 16 26 C 0.14 2.79 9.27 -17.07 -0.16 2.63 16 27 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.13 3.12 6.24 -52.48 -0.33 2.79 16 29 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.12 1.60 7.17 -52.49 -0.38 1.23 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.95 6.80 -51.93 -0.35 0.60 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.10 1.34 7.85 -51.93 -0.41 0.93 16 40 H 0.06 0.88 8.02 -51.93 -0.42 0.47 16 41 H 0.16 3.45 7.40 -52.49 -0.39 3.06 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -27.27 337.69 -10.11 -37.38 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.14 Total: 9.32 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -4.20 Total: -10.50 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.46 Total: -48.79 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.27 -10.11 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240997587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.227 kcal (2) G-P(sol) polarization free energy of solvation -27.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds