Wall clock time and date at job start Fri Apr 10 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86797 * 120.00390 * 2 1 4 4 H 1.48500 * 109.46966 * 270.00439 * 3 2 1 5 5 H 1.48506 * 109.46966 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.47224 * 150.00179 * 3 2 1 7 7 C 1.40148 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00510 * 164.73860 * 7 2 1 9 9 C 1.40865 * 119.99971 * 344.74355 * 7 2 1 10 10 C 1.41149 * 121.10855 * 334.75809 * 9 7 2 11 11 C 1.36435 * 119.11215 * 180.29743 * 10 9 7 12 12 N 1.32240 * 121.53000 * 359.70465 * 11 10 9 13 13 C 1.31633 * 122.51804 * 0.02562 * 12 11 10 14 14 C 1.39405 * 120.64593 * 359.97438 * 13 12 11 15 15 C 1.47716 * 120.79343 * 179.97438 * 14 13 12 16 16 C 1.40337 * 120.48142 * 309.72937 * 15 14 13 17 17 C 1.36897 * 118.48962 * 180.25130 * 16 15 14 18 18 C 1.39386 * 119.39294 * 0.03918 * 17 16 15 19 19 N 1.38692 * 119.53436 * 179.97438 * 18 17 16 20 20 C 1.47019 * 111.00076 * 303.61413 * 19 18 17 21 21 C 1.53100 * 109.25725 * 177.60805 * 20 19 18 22 22 O 1.43012 * 109.25779 * 56.84646 * 21 20 19 23 23 C 1.43018 * 113.74132 * 301.33094 * 22 21 20 24 24 C 1.47020 * 110.99987 * 179.97438 * 19 18 17 25 25 N 1.32554 * 120.93158 * 359.95996 * 18 17 16 26 26 C 1.31741 * 121.64462 * 0.02562 * 25 18 17 27 27 H 0.96995 * 120.00072 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.44538 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.23051 * 179.72393 * 11 10 9 30 30 H 1.08000 * 119.67653 * 180.02562 * 13 12 11 31 31 H 1.08000 * 120.75117 * 0.25107 * 16 15 14 32 32 H 1.07999 * 120.30734 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.50316 * 297.54444 * 20 19 18 34 34 H 1.08998 * 109.50300 * 57.67542 * 20 19 18 35 35 H 1.09002 * 109.50505 * 296.91241 * 21 20 19 36 36 H 1.08995 * 109.53733 * 176.80494 * 21 20 19 37 37 H 1.08997 * 109.50565 * 298.73138 * 23 22 21 38 38 H 1.09007 * 109.53801 * 178.62794 * 23 22 21 39 39 H 1.08999 * 109.50527 * 302.32659 * 24 19 18 40 40 H 1.09002 * 109.50536 * 62.41470 * 24 19 18 41 41 H 1.07998 * 119.74962 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 2.4886 2.0463 -1.4001 5 1 1.4387 2.6526 0.7001 6 1 3.5387 1.4400 0.7000 7 6 2.0078 -1.2137 -0.0005 8 1 3.0593 -1.2302 -0.2467 9 6 1.3408 -2.4123 0.3199 10 6 0.1829 -2.4091 1.1271 11 6 -0.4274 -3.5944 1.4172 12 7 0.0376 -4.7429 0.9551 13 6 1.1086 -4.8176 0.1934 14 6 1.8084 -3.6660 -0.1636 15 6 3.0110 -3.7461 -1.0177 16 6 4.0460 -4.6416 -0.7075 17 6 5.1442 -4.6783 -1.5240 18 6 5.2030 -3.8321 -2.6301 19 7 6.3145 -3.8665 -3.4589 20 6 7.5474 -3.6182 -2.6976 21 6 8.7513 -3.7241 -3.6375 22 8 8.5878 -2.8028 -4.7190 23 6 7.3973 -3.0161 -5.4823 24 6 6.1798 -2.9030 -4.5612 25 7 4.2115 -2.9951 -2.9010 26 6 3.1369 -2.9277 -2.1419 27 1 -0.4850 0.8400 0.0004 28 1 -0.2122 -1.4812 1.5137 29 1 -1.3108 -3.5946 2.0383 30 1 1.4480 -5.7804 -0.1591 31 1 3.9777 -5.2870 0.1557 32 1 5.9577 -5.3566 -1.3131 33 1 7.5117 -2.6193 -2.2629 34 1 7.6398 -4.3586 -1.9030 35 1 8.8179 -4.7386 -4.0306 36 1 9.6631 -3.4852 -3.0903 37 1 7.4247 -4.0099 -5.9291 38 1 7.3294 -2.2650 -6.2693 39 1 5.2739 -3.1213 -5.1267 40 1 6.1215 -1.8926 -4.1563 41 1 2.3474 -2.2341 -2.3910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240997587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:33 Heat of formation + Delta-G solvation = 12.239177 kcal Electronic energy + Delta-G solvation = -25092.451910 eV Core-core repulsion = 21550.290107 eV Total energy + Delta-G solvation = -3542.161803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76537 -40.43777 -39.61102 -36.79931 -36.08644 -33.99357 -33.09884 -32.18867 -31.85013 -30.13078 -28.19122 -27.44425 -25.59308 -24.22596 -23.89455 -23.13912 -22.18962 -21.38341 -19.55403 -18.73843 -17.70685 -17.48526 -16.97600 -16.82163 -16.42495 -16.33895 -16.16523 -15.92438 -15.86100 -15.39938 -14.99801 -14.59437 -14.39333 -14.30226 -14.06834 -13.95392 -13.43973 -13.27530 -13.21882 -12.98801 -12.76317 -12.51677 -12.37411 -12.05700 -11.73033 -11.67328 -11.36349 -11.14383 -10.82371 -10.57828 -10.48714 -9.93749 -9.89873 -9.58128 -8.90404 -8.65385 -6.57842 0.04890 0.43939 0.93610 0.98572 1.32403 1.42758 1.49599 2.10276 2.40705 2.70234 2.90324 2.95229 3.49183 3.66205 3.85670 3.93610 3.98208 4.08094 4.14132 4.17148 4.24158 4.27446 4.30935 4.35945 4.51367 4.58472 4.70963 4.80449 4.83635 4.92155 4.94567 4.96687 4.99466 5.11512 5.19241 5.33795 5.45559 5.54756 5.57399 5.70742 5.87504 6.12851 6.13499 6.17205 6.46433 6.73113 6.75937 7.09396 7.69220 8.14463 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.004261 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.051300 B = 6569.019084 C = 8038.723133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.046 3.954 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.075 0.925 9 C 0.120 3.880 10 C -0.228 4.228 11 C 0.079 3.921 12 N -0.588 5.588 13 C 0.124 3.876 14 C -0.233 4.233 15 C -0.068 4.068 16 C -0.062 4.062 17 C -0.170 4.170 18 C 0.272 3.728 19 N -0.472 5.472 20 C 0.018 3.982 21 C 0.066 3.934 22 O -0.403 6.403 23 C 0.068 3.932 24 C 0.033 3.967 25 N -0.534 5.534 26 C 0.126 3.874 27 H 0.295 0.705 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.035 0.965 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.320 -4.051 -5.640 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.093 0.907 9 C 0.112 3.888 10 C -0.250 4.250 11 C -0.069 4.069 12 N -0.302 5.302 13 C -0.034 4.034 14 C -0.238 4.238 15 C -0.072 4.072 16 C -0.088 4.088 17 C -0.192 4.192 18 C 0.040 3.960 19 N -0.191 5.191 20 C -0.108 4.108 21 C -0.011 4.011 22 O -0.321 6.321 23 C -0.009 4.009 24 C -0.095 4.095 25 N -0.248 5.248 26 C -0.031 4.031 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.053 0.947 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.900 -4.435 -6.404 15.934 hybrid contribution -0.408 1.770 0.945 2.047 sum 13.492 -2.665 -5.458 14.796 Atomic orbital electron populations 1.69762 1.08823 1.31270 1.32764 1.26686 0.95402 1.04164 0.91063 0.85356 0.79296 0.76591 0.79614 1.18909 1.18271 1.18670 1.19597 0.97117 0.91363 1.40782 0.90721 1.18083 0.90771 0.92313 0.87652 1.21925 1.00843 0.98471 1.03782 1.22050 0.98639 0.88423 0.97807 1.67387 1.16331 1.29091 1.17396 1.22510 0.90870 0.96730 0.93244 1.19606 1.01477 0.94628 1.08139 1.19515 0.94876 0.97539 0.95257 1.21536 0.91477 0.96807 0.98998 1.21364 1.00755 1.01763 0.95273 1.20099 0.91773 0.92352 0.91735 1.59478 1.00994 1.48694 1.09964 1.23114 0.88444 1.01573 0.97651 1.22867 0.96802 0.94268 0.87140 1.87969 1.42413 1.56946 1.44806 1.22819 0.81918 1.03277 0.92916 1.22604 1.00528 0.93513 0.92851 1.67512 1.03135 1.21341 1.32776 1.22521 0.93873 0.96390 0.90320 0.89389 0.86545 0.84104 0.83450 0.83299 0.81854 0.94680 0.86801 0.90634 0.85693 0.91041 0.86574 0.89695 0.94670 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.93 10.92 21.86 0.24 -38.69 16 2 C 0.05 2.17 5.22 85.32 0.45 2.61 16 3 Si 0.97 36.72 29.59 68.60 2.03 38.74 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.46 -23.01 7.33 23.38 0.17 -22.84 16 8 H 0.07 3.77 6.72 -2.91 -0.02 3.75 16 9 C 0.12 6.08 5.59 -20.92 -0.12 5.97 16 10 C -0.23 -11.46 8.72 22.56 0.20 -11.27 16 11 C 0.08 3.67 11.08 84.21 0.93 4.61 16 12 N -0.59 -27.37 10.32 -196.16 -2.02 -29.39 16 13 C 0.12 5.46 10.73 85.00 0.91 6.37 16 14 C -0.23 -10.72 5.55 -19.49 -0.11 -10.83 16 15 C -0.07 -2.78 5.00 -19.93 -0.10 -2.88 16 16 C -0.06 -2.05 9.66 22.47 0.22 -1.84 16 17 C -0.17 -4.87 9.15 22.23 0.20 -4.67 16 18 C 0.27 8.80 6.40 133.18 0.85 9.65 16 19 N -0.47 -12.48 4.74 -700.82 -3.32 -15.81 16 20 C 0.02 0.38 5.39 86.31 0.47 0.84 16 21 C 0.07 1.08 7.01 72.02 0.50 1.59 16 22 O -0.40 -8.67 10.83 -148.98 -1.61 -10.29 16 23 C 0.07 1.33 7.01 72.01 0.50 1.83 16 24 C 0.03 0.85 4.81 86.31 0.42 1.27 16 25 N -0.53 -20.46 8.67 -192.09 -1.67 -22.13 16 26 C 0.13 5.29 9.27 85.04 0.79 6.07 16 27 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 28 H 0.12 5.99 6.24 -2.91 -0.02 5.97 16 29 H 0.14 5.74 8.06 -2.91 -0.02 5.71 16 30 H 0.15 5.54 8.06 -2.91 -0.02 5.52 16 31 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.16 3.40 7.17 -2.91 -0.02 3.38 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.87 6.80 -2.39 -0.02 1.85 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.08 2.37 7.85 -2.39 -0.02 2.35 16 40 H 0.03 1.07 8.02 -2.39 -0.02 1.06 16 41 H 0.14 6.26 7.40 -2.91 -0.02 6.23 16 Total: -1.00 -60.41 337.69 0.98 -59.44 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 1.05 Total: 31.63 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 6.29 Total: -13.50 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -6.77 Total: -106.02 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.61 Total: -10.29 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.74 kcal Total: -60.41 0.98 -59.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240997587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.674 kcal (2) G-P(sol) polarization free energy of solvation -60.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds