Wall clock time and date at job start Fri Apr 10 2020 22:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86793 * 120.00056 * 2 1 4 4 H 1.48502 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47078 * 120.00159 * 3 2 1 6 6 H 1.48505 * 109.47284 * 239.99705 * 3 2 1 7 7 C 1.40118 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00478 * 359.97438 * 7 2 1 9 9 C 1.40738 * 119.99499 * 179.97438 * 7 2 1 10 10 N 1.33718 * 119.95076 * 351.22568 * 9 7 2 11 11 C 1.31267 * 121.63951 * 179.97438 * 10 9 7 12 12 C 1.39094 * 121.36050 * 0.02562 * 11 10 9 13 13 C 1.38329 * 119.73776 * 359.97438 * 12 11 10 14 14 C 1.39773 * 118.47257 * 359.74391 * 13 12 11 15 15 C 1.47676 * 120.65852 * 180.24961 * 14 13 12 16 16 C 1.40349 * 120.48255 * 309.97245 * 15 14 13 17 17 C 1.36888 * 118.48870 * 179.77623 * 16 15 14 18 18 C 1.39395 * 119.39073 * 0.49904 * 17 16 15 19 19 N 1.38670 * 119.52802 * 179.75919 * 18 17 16 20 20 C 1.47008 * 111.00490 * 303.61944 * 19 18 17 21 21 C 1.53095 * 109.25983 * 177.60785 * 20 19 18 22 22 O 1.43018 * 109.25940 * 56.84749 * 21 20 19 23 23 C 1.43012 * 113.73546 * 301.32748 * 22 21 20 24 24 C 1.47013 * 110.99752 * 179.97438 * 19 18 17 25 25 N 1.32560 * 120.93901 * 359.74330 * 18 17 16 26 26 C 1.31720 * 121.64594 * 359.97438 * 25 18 17 27 27 H 0.97001 * 120.00443 * 175.11953 * 1 2 3 28 28 H 1.07997 * 119.32567 * 179.97438 * 11 10 9 29 29 H 1.07994 * 120.13184 * 180.02562 * 12 11 10 30 30 H 1.07997 * 120.76414 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.75572 * 0.02768 * 16 15 14 32 32 H 1.08002 * 120.30409 * 180.22205 * 17 16 15 33 33 H 1.09004 * 109.50363 * 297.53955 * 20 19 18 34 34 H 1.09001 * 109.51148 * 57.67119 * 20 19 18 35 35 H 1.09000 * 109.50589 * 296.90909 * 21 20 19 36 36 H 1.09005 * 109.54418 * 176.80392 * 21 20 19 37 37 H 1.08997 * 109.51093 * 298.73654 * 23 22 21 38 38 H 1.09009 * 109.54292 * 178.62475 * 23 22 21 39 39 H 1.08994 * 109.51109 * 302.33473 * 24 19 18 40 40 H 1.09008 * 109.50350 * 62.42411 * 24 19 18 41 41 H 1.07992 * 119.75363 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6963 1.2125 6 1 3.0950 1.6963 -1.2125 7 6 2.0077 -1.2135 0.0005 8 1 1.4677 -2.1488 0.0014 9 6 3.4151 -1.2135 0.0000 10 7 4.0826 -0.0686 -0.1778 11 6 5.3947 -0.0303 -0.1837 12 6 6.1533 -1.1824 -0.0054 13 6 5.5208 -2.3981 0.1834 14 6 4.1235 -2.4276 0.1941 15 6 3.3986 -3.6981 0.3972 16 6 3.7222 -4.8319 -0.3640 17 6 3.0274 -5.9897 -0.1388 18 6 2.0199 -6.0065 0.8244 19 7 1.3109 -7.1764 1.0514 20 6 0.6894 -7.6648 -0.1881 21 6 -0.0311 -8.9857 0.0948 22 8 -0.9885 -8.7867 1.1385 23 6 -0.4173 -8.3119 2.3606 24 6 0.2994 -6.9841 2.1008 25 7 1.7302 -4.9202 1.5267 26 6 2.3776 -3.7873 1.3459 27 1 -0.4851 -0.8370 -0.0715 28 1 5.8956 0.9151 -0.3309 29 1 7.2319 -1.1280 -0.0134 30 1 6.0935 -3.3030 0.3230 31 1 4.5044 -4.7931 -1.1077 32 1 3.2546 -6.8806 -0.7053 33 1 -0.0286 -6.9288 -0.5498 34 1 1.4594 -7.8246 -0.9429 35 1 0.6949 -9.7371 0.4051 36 1 -0.5412 -9.3233 -0.8075 37 1 0.2974 -9.0437 2.7369 38 1 -1.2064 -8.1614 3.0976 39 1 0.7846 -6.6470 3.0167 40 1 -0.4245 -6.2366 1.7760 41 1 2.1160 -2.9207 1.9348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240997795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:37 Heat of formation + Delta-G solvation = 22.412072 kcal Electronic energy + Delta-G solvation = -25159.454148 eV Core-core repulsion = 21617.733475 eV Total energy + Delta-G solvation = -3541.720673 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60575 -39.22590 -38.36197 -35.72569 -34.00867 -32.77129 -31.80352 -31.11749 -31.01879 -28.99998 -26.75546 -25.60777 -24.55196 -23.09168 -22.51454 -21.57668 -20.77399 -20.27676 -18.52500 -17.67877 -16.52166 -16.18309 -15.95734 -15.41108 -15.37109 -15.16369 -14.96325 -14.85331 -14.32939 -13.81187 -13.78783 -13.25623 -13.00679 -12.86434 -12.71845 -12.41055 -12.30684 -12.02184 -11.87417 -11.62471 -11.50566 -10.96917 -10.83493 -10.76202 -10.22583 -10.13427 -9.78884 -9.57667 -9.39541 -9.33860 -9.17578 -8.73413 -8.20222 -7.89268 -7.44918 -7.35113 -4.92306 1.37905 1.72921 2.42310 2.51394 3.48424 3.53796 3.60641 3.70703 3.94570 4.23925 4.33570 4.50330 4.58534 4.80416 4.87938 4.97636 5.11879 5.16849 5.26189 5.29044 5.38779 5.45404 5.46870 5.49244 5.56688 5.64140 5.69129 5.78815 5.90547 6.00750 6.08950 6.21995 6.32534 6.38187 6.56811 6.78805 6.80716 6.85263 6.93942 7.13223 7.26068 7.32343 7.41408 7.53344 7.91573 8.11943 8.40031 8.47248 9.29751 9.83969 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003886 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.082284 B = 7204.304520 C = 8264.248366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.041 3.959 3 Si 1.155 2.845 4 H -0.331 1.331 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.460 4.460 8 H 0.089 0.911 9 C 0.259 3.741 10 N -0.569 5.569 11 C 0.162 3.838 12 C -0.317 4.317 13 C -0.018 4.018 14 C -0.220 4.220 15 C -0.050 4.050 16 C -0.068 4.068 17 C -0.180 4.180 18 C 0.275 3.725 19 N -0.475 5.475 20 C 0.021 3.979 21 C 0.065 3.935 22 O -0.386 6.386 23 C 0.061 3.939 24 C 0.031 3.969 25 N -0.515 5.515 26 C 0.135 3.865 27 H 0.285 0.715 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -13.347 0.609 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.182 4.182 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.490 4.490 8 H 0.107 0.893 9 C 0.138 3.862 10 N -0.287 5.287 11 C -0.003 4.003 12 C -0.340 4.340 13 C -0.042 4.042 14 C -0.225 4.225 15 C -0.053 4.053 16 C -0.094 4.094 17 C -0.202 4.202 18 C 0.044 3.956 19 N -0.194 5.194 20 C -0.106 4.106 21 C -0.012 4.012 22 O -0.304 6.304 23 C -0.016 4.016 24 C -0.096 4.096 25 N -0.228 5.228 26 C -0.023 4.023 27 H 0.096 0.904 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.309 -11.609 1.328 11.758 hybrid contribution 1.257 -1.967 -0.831 2.478 sum 2.566 -13.577 0.496 13.826 Atomic orbital electron populations 1.70641 1.08269 1.32975 1.29142 1.27940 0.95279 1.06324 0.88612 0.81806 0.70573 0.69278 0.79365 1.26489 1.21967 1.20846 1.20897 0.90515 0.96562 1.40998 0.89309 1.18541 0.93648 0.86012 0.88005 1.66544 1.09101 1.27895 1.25144 1.22244 0.89876 0.96956 0.91182 1.21081 0.98904 0.93888 1.20152 1.21015 0.92975 0.96685 0.93543 1.19004 0.92535 0.92629 1.18294 1.19548 0.96770 0.93361 0.95621 1.21292 0.98567 0.91852 0.97706 1.21035 0.98781 0.99203 1.01225 1.19636 0.94364 0.87923 0.93640 1.59365 1.25705 1.25772 1.08589 1.22945 0.98692 0.97778 0.91204 1.22673 0.91849 0.95190 0.91461 1.87987 1.34135 1.86467 1.21855 1.22792 0.97902 0.94270 0.86645 1.22616 0.93623 0.97257 0.96123 1.67545 1.28572 0.98936 1.27753 1.22882 0.90996 0.93660 0.94729 0.90371 0.85311 0.87608 0.87865 0.85371 0.85613 0.92873 0.88967 0.92124 0.88094 0.92379 0.88117 0.88665 0.92313 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.87 13.65 55.56 0.76 -20.11 16 2 C 0.04 1.08 5.52 -17.32 -0.10 0.98 16 3 Si 1.16 27.44 25.51 -169.99 -4.34 23.10 16 4 H -0.33 -7.84 7.11 56.52 0.40 -7.44 16 5 H -0.29 -6.92 7.09 56.52 0.40 -6.52 16 6 H -0.28 -6.63 6.76 56.52 0.38 -6.25 16 7 C -0.46 -11.82 8.19 -37.93 -0.31 -12.13 16 8 H 0.09 2.32 5.85 -52.49 -0.31 2.01 16 9 C 0.26 6.38 6.39 -84.70 -0.54 5.83 16 10 N -0.57 -13.73 4.58 -10.90 -0.05 -13.78 16 11 C 0.16 3.34 11.17 -17.48 -0.20 3.15 16 12 C -0.32 -6.05 10.10 -39.23 -0.40 -6.44 16 13 C -0.02 -0.35 9.69 -38.97 -0.38 -0.73 16 14 C -0.22 -4.80 5.55 -104.07 -0.58 -5.38 16 15 C -0.05 -1.00 4.98 -104.72 -0.52 -1.52 16 16 C -0.07 -1.18 9.65 -39.28 -0.38 -1.56 16 17 C -0.18 -2.84 9.15 -39.64 -0.36 -3.20 16 18 C 0.28 4.67 6.40 -155.11 -0.99 3.67 16 19 N -0.48 -6.82 4.74 -172.87 -0.82 -7.64 16 20 C 0.02 0.25 5.39 -3.72 -0.02 0.23 16 21 C 0.07 0.66 7.01 37.21 0.26 0.92 16 22 O -0.39 -4.74 10.83 -35.23 -0.38 -5.12 16 23 C 0.06 0.67 7.01 37.21 0.26 0.93 16 24 C 0.03 0.43 4.81 -3.71 -0.02 0.41 16 25 N -0.52 -9.85 8.67 -12.07 -0.10 -9.96 16 26 C 0.14 2.76 8.84 -17.07 -0.15 2.61 16 27 H 0.28 7.30 8.72 -40.82 -0.36 6.94 16 28 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.13 1.61 7.17 -52.49 -0.38 1.23 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.96 6.80 -51.93 -0.35 0.61 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.10 1.34 7.85 -51.93 -0.41 0.94 16 40 H 0.06 0.92 8.02 -51.92 -0.42 0.50 16 41 H 0.16 3.44 7.30 -52.49 -0.38 3.05 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -28.62 333.44 -9.55 -38.17 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.22 Total: 2.52 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -4.42 Total: -12.22 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.22 Total: -51.48 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.38 Total: -5.12 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: -4.34 Total: 23.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.62 -9.55 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240997795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.585 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds