Wall clock time and date at job start Fri Apr 10 2020 22:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86793 * 120.00056 * 2 1 4 4 H 1.48502 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47078 * 120.00159 * 3 2 1 6 6 H 1.48505 * 109.47284 * 239.99705 * 3 2 1 7 7 C 1.40118 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00478 * 359.97438 * 7 2 1 9 9 C 1.40738 * 119.99499 * 179.97438 * 7 2 1 10 10 N 1.33718 * 119.95076 * 351.22568 * 9 7 2 11 11 C 1.31267 * 121.63951 * 179.97438 * 10 9 7 12 12 C 1.39094 * 121.36050 * 0.02562 * 11 10 9 13 13 C 1.38329 * 119.73776 * 359.97438 * 12 11 10 14 14 C 1.39773 * 118.47257 * 359.74391 * 13 12 11 15 15 C 1.47676 * 120.65852 * 180.24961 * 14 13 12 16 16 C 1.40349 * 120.48255 * 309.97245 * 15 14 13 17 17 C 1.36888 * 118.48870 * 179.77623 * 16 15 14 18 18 C 1.39395 * 119.39073 * 0.49904 * 17 16 15 19 19 N 1.38670 * 119.52802 * 179.75919 * 18 17 16 20 20 C 1.47008 * 111.00490 * 303.61944 * 19 18 17 21 21 C 1.53095 * 109.25983 * 177.60785 * 20 19 18 22 22 O 1.43018 * 109.25940 * 56.84749 * 21 20 19 23 23 C 1.43012 * 113.73546 * 301.32748 * 22 21 20 24 24 C 1.47013 * 110.99752 * 179.97438 * 19 18 17 25 25 N 1.32560 * 120.93901 * 359.74330 * 18 17 16 26 26 C 1.31720 * 121.64594 * 359.97438 * 25 18 17 27 27 H 0.97001 * 120.00443 * 175.11953 * 1 2 3 28 28 H 1.07997 * 119.32567 * 179.97438 * 11 10 9 29 29 H 1.07994 * 120.13184 * 180.02562 * 12 11 10 30 30 H 1.07997 * 120.76414 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.75572 * 0.02768 * 16 15 14 32 32 H 1.08002 * 120.30409 * 180.22205 * 17 16 15 33 33 H 1.09004 * 109.50363 * 297.53955 * 20 19 18 34 34 H 1.09001 * 109.51148 * 57.67119 * 20 19 18 35 35 H 1.09000 * 109.50589 * 296.90909 * 21 20 19 36 36 H 1.09005 * 109.54418 * 176.80392 * 21 20 19 37 37 H 1.08997 * 109.51093 * 298.73654 * 23 22 21 38 38 H 1.09009 * 109.54292 * 178.62475 * 23 22 21 39 39 H 1.08994 * 109.51109 * 302.33473 * 24 19 18 40 40 H 1.09008 * 109.50350 * 62.42411 * 24 19 18 41 41 H 1.07992 * 119.75363 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6963 1.2125 6 1 3.0950 1.6963 -1.2125 7 6 2.0077 -1.2135 0.0005 8 1 1.4677 -2.1488 0.0014 9 6 3.4151 -1.2135 0.0000 10 7 4.0826 -0.0686 -0.1778 11 6 5.3947 -0.0303 -0.1837 12 6 6.1533 -1.1824 -0.0054 13 6 5.5208 -2.3981 0.1834 14 6 4.1235 -2.4276 0.1941 15 6 3.3986 -3.6981 0.3972 16 6 3.7222 -4.8319 -0.3640 17 6 3.0274 -5.9897 -0.1388 18 6 2.0199 -6.0065 0.8244 19 7 1.3109 -7.1764 1.0514 20 6 0.6894 -7.6648 -0.1881 21 6 -0.0311 -8.9857 0.0948 22 8 -0.9885 -8.7867 1.1385 23 6 -0.4173 -8.3119 2.3606 24 6 0.2994 -6.9841 2.1008 25 7 1.7302 -4.9202 1.5267 26 6 2.3776 -3.7873 1.3459 27 1 -0.4851 -0.8370 -0.0715 28 1 5.8956 0.9151 -0.3309 29 1 7.2319 -1.1280 -0.0134 30 1 6.0935 -3.3030 0.3230 31 1 4.5044 -4.7931 -1.1077 32 1 3.2546 -6.8806 -0.7053 33 1 -0.0286 -6.9288 -0.5498 34 1 1.4594 -7.8246 -0.9429 35 1 0.6949 -9.7371 0.4051 36 1 -0.5412 -9.3233 -0.8075 37 1 0.2974 -9.0437 2.7369 38 1 -1.2064 -8.1614 3.0976 39 1 0.7846 -6.6470 3.0167 40 1 -0.4245 -6.2366 1.7760 41 1 2.1160 -2.9207 1.9348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240997795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:36 Heat of formation + Delta-G solvation = 5.007075 kcal Electronic energy + Delta-G solvation = -25160.208885 eV Core-core repulsion = 21617.733475 eV Total energy + Delta-G solvation = -3542.475410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88093 -40.63377 -39.74559 -36.88509 -35.85037 -34.24332 -33.14558 -32.76433 -32.13170 -30.39853 -28.07196 -27.23923 -25.65720 -24.50796 -23.88250 -23.12591 -22.23596 -21.46824 -20.38853 -18.85679 -17.85295 -17.65465 -17.07711 -16.83019 -16.71029 -16.50177 -16.07000 -15.95473 -15.62743 -15.49146 -15.14464 -14.78078 -14.55075 -14.36629 -14.25596 -14.03884 -13.69642 -13.39581 -13.33486 -12.69147 -12.62574 -12.47572 -12.42967 -11.94417 -11.78989 -11.67177 -11.33534 -11.15029 -10.94693 -10.63988 -10.55265 -10.30907 -9.80494 -9.72749 -9.26329 -8.89986 -6.78358 -0.07502 0.33370 0.73036 0.87339 1.60107 1.72627 2.05821 2.31775 2.43866 2.65034 2.83311 2.87321 3.38949 3.54155 3.78524 3.85198 3.90305 3.98669 4.07611 4.10253 4.16426 4.18935 4.21387 4.25766 4.35153 4.49563 4.60724 4.65281 4.69275 4.74214 4.82301 4.86516 4.90796 4.95485 5.17450 5.26443 5.35200 5.38166 5.51473 5.61074 5.68577 5.86315 6.01669 6.06508 6.08311 6.36056 6.64891 6.98749 7.56068 7.90811 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003886 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.082284 B = 7204.304520 C = 8264.248366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.013 3.987 3 Si 1.191 2.809 4 H -0.336 1.336 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.493 4.493 8 H 0.068 0.932 9 C 0.246 3.754 10 N -0.595 5.595 11 C 0.137 3.863 12 C -0.288 4.288 13 C -0.022 4.022 14 C -0.222 4.222 15 C -0.075 4.075 16 C -0.060 4.060 17 C -0.170 4.170 18 C 0.272 3.728 19 N -0.471 5.471 20 C 0.018 3.982 21 C 0.066 3.934 22 O -0.403 6.403 23 C 0.068 3.932 24 C 0.032 3.968 25 N -0.536 5.536 26 C 0.119 3.881 27 H 0.277 0.723 28 H 0.163 0.837 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.030 0.970 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -16.026 -0.293 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.203 4.203 3 Si 1.024 2.976 4 H -0.270 1.270 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.525 4.525 8 H 0.086 0.914 9 C 0.123 3.877 10 N -0.314 5.314 11 C -0.024 4.024 12 C -0.310 4.310 13 C -0.046 4.046 14 C -0.227 4.227 15 C -0.078 4.078 16 C -0.086 4.086 17 C -0.192 4.192 18 C 0.040 3.960 19 N -0.189 5.189 20 C -0.108 4.108 21 C -0.010 4.010 22 O -0.322 6.322 23 C -0.009 4.009 24 C -0.095 4.095 25 N -0.250 5.250 26 C -0.038 4.038 27 H 0.087 0.913 28 H 0.180 0.820 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.049 0.951 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.549 -14.286 0.424 14.998 hybrid contribution 0.538 -1.363 -0.538 1.561 sum 5.087 -15.649 -0.114 16.455 Atomic orbital electron populations 1.70678 1.08697 1.32347 1.33125 1.28605 0.95491 1.08062 0.88174 0.81314 0.69699 0.67548 0.79062 1.26963 1.22260 1.20583 1.20709 0.91510 0.95633 1.44659 0.91356 1.18709 0.93486 0.87527 0.88025 1.66428 1.11031 1.28035 1.25880 1.22928 0.88965 0.99380 0.91116 1.21633 1.01003 0.92787 1.15578 1.21456 0.92048 0.98523 0.92556 1.19277 0.93908 0.92402 1.17099 1.19566 0.97383 0.94010 0.96868 1.21553 0.98863 0.90976 0.97171 1.21413 0.97281 1.00131 1.00337 1.20148 0.94783 0.87925 0.93095 1.59477 1.25794 1.23922 1.09732 1.23127 0.98997 0.98184 0.90516 1.22877 0.92027 0.94150 0.91983 1.87975 1.35333 1.86325 1.22527 1.22822 0.98482 0.92747 0.86811 1.22607 0.92976 0.98412 0.95521 1.67489 1.28973 0.99387 1.29148 1.22521 0.92044 0.93514 0.95671 0.91277 0.81978 0.83339 0.84340 0.82705 0.81569 0.95104 0.86632 0.90336 0.85656 0.90736 0.86579 0.89648 0.95145 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.78 13.65 21.85 0.30 -46.49 16 2 C 0.01 0.75 5.52 85.31 0.47 1.22 16 3 Si 1.19 57.79 25.51 68.60 1.75 59.54 16 4 H -0.34 -16.18 7.11 99.48 0.71 -15.47 16 5 H -0.29 -14.13 7.09 99.48 0.70 -13.43 16 6 H -0.28 -13.14 6.76 99.48 0.67 -12.47 16 7 C -0.49 -26.98 8.19 23.34 0.19 -26.79 16 8 H 0.07 3.90 5.85 -2.91 -0.02 3.88 16 9 C 0.25 12.30 6.39 40.37 0.26 12.56 16 10 N -0.60 -28.42 4.58 -188.40 -0.86 -29.28 16 11 C 0.14 5.29 11.17 84.98 0.95 6.24 16 12 C -0.29 -9.68 10.10 22.50 0.23 -9.45 16 13 C -0.02 -0.77 9.69 22.66 0.22 -0.55 16 14 C -0.22 -9.57 5.55 -19.51 -0.11 -9.68 16 15 C -0.07 -3.00 4.98 -19.93 -0.10 -3.10 16 16 C -0.06 -1.92 9.65 22.47 0.22 -1.70 16 17 C -0.17 -4.86 9.15 22.23 0.20 -4.66 16 18 C 0.27 9.02 6.40 133.19 0.85 9.87 16 19 N -0.47 -12.83 4.74 -700.83 -3.32 -16.15 16 20 C 0.02 0.39 5.39 86.31 0.47 0.85 16 21 C 0.07 1.14 7.01 72.01 0.50 1.64 16 22 O -0.40 -9.08 10.83 -148.98 -1.61 -10.69 16 23 C 0.07 1.40 7.01 72.02 0.50 1.91 16 24 C 0.03 0.89 4.81 86.32 0.42 1.31 16 25 N -0.54 -21.33 8.67 -192.08 -1.67 -22.99 16 26 C 0.12 5.14 8.84 85.05 0.75 5.89 16 27 H 0.28 15.49 8.72 -92.71 -0.81 14.68 16 28 H 0.16 5.03 8.06 -2.91 -0.02 5.00 16 29 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 30 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.17 3.40 7.17 -2.91 -0.02 3.37 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 1.96 6.80 -2.39 -0.02 1.95 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.99 8.14 -2.38 -0.02 1.98 16 39 H 0.09 2.48 7.85 -2.39 -0.02 2.46 16 40 H 0.03 1.00 8.02 -2.38 -0.02 0.98 16 41 H 0.13 6.24 7.30 -2.91 -0.02 6.22 16 Total: -1.00 -66.45 333.44 1.58 -64.87 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.97 Total: 15.62 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 6.02 Total: -14.44 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -5.55 Total: -114.91 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.61 Total: -10.69 kcal Atomic # 14 Polarization: 57.79 SS G_CDS: 1.75 Total: 59.54 kcal Total: -66.45 1.58 -64.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240997795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.880 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds