Wall clock time and date at job start Fri Apr 10 2020 22:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86792 * 120.00121 * 2 1 4 4 H 1.48503 * 109.47429 * 269.99478 * 3 2 1 5 5 H 1.48498 * 109.47565 * 29.99647 * 3 2 1 6 6 H 1.48501 * 109.47259 * 149.99640 * 3 2 1 7 7 C 1.40176 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.40797 * 119.99734 * 0.02562 * 7 2 1 10 10 N 1.33976 * 120.29038 * 10.25746 * 9 7 2 11 11 C 1.31600 * 119.89811 * 180.02562 * 10 9 7 12 12 C 1.39198 * 120.50757 * 359.97438 * 11 10 9 13 13 N 1.32009 * 120.58576 * 0.02562 * 12 11 10 14 14 C 1.32861 * 120.07769 * 359.97438 * 13 12 11 15 15 C 1.47802 * 120.24525 * 179.97438 * 14 13 12 16 16 C 1.39757 * 120.11721 * 224.12400 * 15 14 13 17 17 C 1.37941 * 119.99414 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.23393 * 0.02562 * 17 16 15 19 19 C 1.39054 * 120.23426 * 359.95563 * 18 17 16 20 20 N 1.39685 * 119.99923 * 180.02562 * 19 18 17 21 21 C 1.47021 * 111.00037 * 123.63800 * 20 19 18 22 22 C 1.53094 * 109.25600 * 177.60890 * 21 20 19 23 23 O 1.43019 * 109.26233 * 56.84952 * 22 21 20 24 24 C 1.43015 * 113.73627 * 301.32961 * 23 22 21 25 25 C 1.47015 * 111.00118 * 0.02562 * 20 19 18 26 26 C 1.38623 * 120.00283 * 359.79472 * 19 18 17 27 27 H 0.97002 * 119.99669 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.74754 * 180.27755 * 11 10 9 29 29 H 1.07999 * 119.70776 * 180.02562 * 12 11 10 30 30 H 1.08006 * 120.00311 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.87847 * 180.02562 * 17 16 15 32 32 H 1.07993 * 119.88584 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.50164 * 297.54427 * 21 20 19 34 34 H 1.08996 * 109.50497 * 57.67618 * 21 20 19 35 35 H 1.08996 * 109.51077 * 296.90936 * 22 21 20 36 36 H 1.09005 * 109.50619 * 176.78615 * 22 21 20 37 37 H 1.09009 * 109.50476 * 298.73313 * 24 23 22 38 38 H 1.08997 * 109.53853 * 178.62665 * 24 23 22 39 39 H 1.09003 * 109.50577 * 302.32073 * 25 20 19 40 40 H 1.08999 * 109.50840 * 62.40976 * 25 20 19 41 41 H 1.07995 * 120.11680 * 180.25765 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5384 1.4401 0.7001 7 6 2.0077 -1.2140 0.0005 8 1 3.0876 -1.2140 0.0010 9 6 1.3036 -2.4333 0.0005 10 7 -0.0200 -2.4492 -0.2060 11 6 -0.6705 -3.5932 -0.2039 12 6 0.0062 -4.7905 0.0111 13 7 1.3102 -4.7975 0.2166 14 6 1.9900 -3.6560 0.2193 15 6 3.4499 -3.6595 0.4496 16 6 4.0264 -2.7212 1.3101 17 6 5.3892 -2.7271 1.5236 18 6 6.1895 -3.6589 0.8883 19 6 5.6260 -4.5971 0.0304 20 7 6.4390 -5.5364 -0.6083 21 6 5.9941 -6.9061 -0.3125 22 6 6.8730 -7.8988 -1.0779 23 8 8.2425 -7.6862 -0.7248 24 6 8.7092 -6.3627 -1.0000 25 6 7.8489 -5.3547 -0.2335 26 6 4.2570 -4.6033 -0.1872 27 1 -0.4850 0.8401 -0.0004 28 1 -1.7368 -3.6037 -0.3751 29 1 -0.5404 -5.7219 0.0097 30 1 3.4049 -1.9915 1.8079 31 1 5.8326 -2.0014 2.1893 32 1 7.2558 -3.6582 1.0591 33 1 6.0804 -7.0936 0.7578 34 1 4.9557 -7.0262 -0.6212 35 1 6.7456 -7.7467 -2.1496 36 1 6.5838 -8.9170 -0.8174 37 1 8.6352 -6.1657 -2.0696 38 1 9.7481 -6.2693 -0.6838 39 1 8.1646 -4.3420 -0.4845 40 1 7.9644 -5.5168 0.8382 41 1 3.8169 -5.3338 -0.8498 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241954708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:41 Heat of formation + Delta-G solvation = 37.008621 kcal Electronic energy + Delta-G solvation = -25156.894530 eV Core-core repulsion = 21615.806811 eV Total energy + Delta-G solvation = -3541.087719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.28923 -39.15490 -37.97642 -35.44539 -34.20391 -32.45181 -31.61852 -31.12699 -29.98985 -28.69532 -26.51849 -26.07116 -24.62029 -23.01693 -22.16982 -21.41568 -20.90069 -19.81416 -17.74101 -17.43801 -16.27299 -16.15811 -15.65312 -15.44281 -15.32329 -15.02927 -14.71005 -14.67122 -14.30442 -14.02129 -13.67790 -13.22620 -12.88761 -12.80377 -12.43769 -12.03016 -11.96713 -11.61897 -11.54340 -11.51803 -11.44191 -11.05171 -10.85743 -10.60865 -10.53678 -10.24381 -9.99260 -9.86718 -9.63343 -9.33418 -9.17289 -8.47524 -7.68438 -7.54824 -7.35415 -6.66315 -4.77710 1.71026 1.98258 2.50858 2.91433 2.96026 2.99298 3.12218 3.64221 3.75246 3.80373 4.38590 4.54197 4.74237 4.86922 4.95544 5.01811 5.18540 5.31594 5.40070 5.42749 5.49888 5.58750 5.62689 5.66638 5.74467 5.82988 5.93053 6.02117 6.08896 6.12757 6.22973 6.37292 6.47675 6.64872 6.74858 6.87999 6.95198 6.98388 7.03998 7.13601 7.28200 7.41422 7.58464 7.72713 7.95990 8.27838 8.54120 9.13020 9.71778 9.98300 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016586 B = 0.004062 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.791586 B = 6891.158128 C = 8222.913076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.403 4.403 8 H 0.102 0.898 9 C 0.223 3.777 10 N -0.454 5.454 11 C 0.089 3.911 12 C -0.118 4.118 13 N -0.411 5.411 14 C -0.033 4.033 15 C 0.051 3.949 16 C -0.122 4.122 17 C -0.103 4.103 18 C -0.187 4.187 19 C 0.095 3.905 20 N -0.487 5.487 21 C 0.020 3.980 22 C 0.063 3.937 23 O -0.387 6.387 24 C 0.063 3.937 25 C 0.015 3.985 26 C -0.122 4.122 27 H 0.280 0.720 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 -5.795 0.045 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.162 4.162 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.433 4.433 8 H 0.120 0.880 9 C 0.098 3.902 10 N -0.170 5.170 11 C -0.083 4.083 12 C -0.279 4.279 13 N -0.123 5.123 14 C -0.180 4.180 15 C 0.049 3.951 16 C -0.141 4.141 17 C -0.122 4.122 18 C -0.208 4.208 19 C -0.001 4.001 20 N -0.203 5.203 21 C -0.106 4.106 22 C -0.014 4.014 23 O -0.306 6.306 24 C -0.014 4.014 25 C -0.112 4.112 26 C -0.143 4.143 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.403 -5.749 -0.414 12.777 hybrid contribution -0.075 0.879 0.564 1.047 sum 11.328 -4.870 0.150 12.331 Atomic orbital electron populations 1.70035 1.07541 1.28846 1.26103 1.26230 0.94979 1.01650 0.93378 0.86252 0.80676 0.80019 0.79772 1.18971 1.19805 1.17873 1.19924 0.95384 0.88952 1.39052 0.88021 1.19210 0.88902 0.92319 0.89737 1.69523 1.07597 1.24670 1.15187 1.23539 0.99910 0.90362 0.94477 1.22556 0.91319 0.97953 1.16121 1.67681 1.08282 1.29349 1.07000 1.20133 0.92590 0.90497 1.14753 1.18203 0.90898 0.92846 0.93189 1.21418 0.94475 0.99436 0.98793 1.20804 0.93667 0.98212 0.99518 1.21088 0.99464 0.99873 1.00342 1.18665 0.92148 0.94866 0.94466 1.59400 1.02225 1.03053 1.55665 1.22927 1.00927 0.87202 0.99576 1.22720 0.80943 0.98781 0.98931 1.87967 1.26836 1.30323 1.85462 1.22705 0.97577 0.81705 0.99429 1.22916 0.88186 1.01018 0.99112 1.20808 0.90794 1.00789 1.01913 0.90883 0.85187 0.85418 0.84939 0.86601 0.86658 0.93158 0.88650 0.92114 0.88192 0.92207 0.88345 0.89016 0.92959 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.64 11.54 55.56 0.64 -17.00 16 2 C 0.07 1.55 5.49 -17.31 -0.10 1.46 16 3 Si 0.91 17.43 29.56 -169.99 -5.02 12.41 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 7 C -0.40 -10.09 7.45 -37.89 -0.28 -10.37 16 8 H 0.10 2.41 5.37 -52.49 -0.28 2.13 16 9 C 0.22 5.88 6.51 -84.56 -0.55 5.33 16 10 N -0.45 -12.07 8.12 -10.73 -0.09 -12.16 16 11 C 0.09 2.07 11.22 -17.29 -0.19 1.87 16 12 C -0.12 -2.67 11.22 -17.12 -0.19 -2.86 16 13 N -0.41 -10.00 10.30 -8.97 -0.09 -10.09 16 14 C -0.03 -0.82 6.42 -82.10 -0.53 -1.35 16 15 C 0.05 1.11 5.28 -104.93 -0.55 0.56 16 16 C -0.12 -2.42 7.54 -39.12 -0.29 -2.72 16 17 C -0.10 -1.73 10.02 -39.67 -0.40 -2.13 16 18 C -0.19 -2.97 8.82 -39.26 -0.35 -3.32 16 19 C 0.09 1.61 5.64 -83.83 -0.47 1.14 16 20 N -0.49 -7.08 4.77 -170.84 -0.82 -7.90 16 21 C 0.02 0.26 5.40 -3.71 -0.02 0.24 16 22 C 0.06 0.70 7.01 37.21 0.26 0.96 16 23 O -0.39 -4.68 10.83 -35.23 -0.38 -5.06 16 24 C 0.06 0.65 7.01 37.21 0.26 0.91 16 25 C 0.02 0.18 4.33 -3.71 -0.02 0.16 16 26 C -0.12 -2.41 8.82 -38.95 -0.34 -2.75 16 27 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 28 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.13 2.47 8.06 -52.49 -0.42 2.04 16 30 H 0.13 2.73 6.72 -52.48 -0.35 2.38 16 31 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.12 1.52 5.79 -52.49 -0.30 1.22 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.30 6.84 -51.93 -0.36 0.94 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.01 7.22 -51.93 -0.37 0.63 16 40 H 0.05 0.62 7.53 -51.93 -0.39 0.23 16 41 H 0.12 2.39 7.18 -52.49 -0.38 2.01 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -29.51 334.43 -9.44 -38.95 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.95 Total: 8.69 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.76 Total: -12.88 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.35 Total: -47.14 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.38 Total: -5.06 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.02 Total: 12.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.51 -9.44 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241954708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.959 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds