Wall clock time and date at job start Fri Apr 10 2020 22:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86792 * 120.00121 * 2 1 4 4 H 1.48503 * 109.47429 * 269.99478 * 3 2 1 5 5 H 1.48498 * 109.47565 * 29.99647 * 3 2 1 6 6 H 1.48501 * 109.47259 * 149.99640 * 3 2 1 7 7 C 1.40176 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.40797 * 119.99734 * 0.02562 * 7 2 1 10 10 N 1.33976 * 120.29038 * 10.25746 * 9 7 2 11 11 C 1.31600 * 119.89811 * 180.02562 * 10 9 7 12 12 C 1.39198 * 120.50757 * 359.97438 * 11 10 9 13 13 N 1.32009 * 120.58576 * 0.02562 * 12 11 10 14 14 C 1.32861 * 120.07769 * 359.97438 * 13 12 11 15 15 C 1.47802 * 120.24525 * 179.97438 * 14 13 12 16 16 C 1.39757 * 120.11721 * 224.12400 * 15 14 13 17 17 C 1.37941 * 119.99414 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.23393 * 0.02562 * 17 16 15 19 19 C 1.39054 * 120.23426 * 359.95563 * 18 17 16 20 20 N 1.39685 * 119.99923 * 180.02562 * 19 18 17 21 21 C 1.47021 * 111.00037 * 123.63800 * 20 19 18 22 22 C 1.53094 * 109.25600 * 177.60890 * 21 20 19 23 23 O 1.43019 * 109.26233 * 56.84952 * 22 21 20 24 24 C 1.43015 * 113.73627 * 301.32961 * 23 22 21 25 25 C 1.47015 * 111.00118 * 0.02562 * 20 19 18 26 26 C 1.38623 * 120.00283 * 359.79472 * 19 18 17 27 27 H 0.97002 * 119.99669 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.74754 * 180.27755 * 11 10 9 29 29 H 1.07999 * 119.70776 * 180.02562 * 12 11 10 30 30 H 1.08006 * 120.00311 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.87847 * 180.02562 * 17 16 15 32 32 H 1.07993 * 119.88584 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.50164 * 297.54427 * 21 20 19 34 34 H 1.08996 * 109.50497 * 57.67618 * 21 20 19 35 35 H 1.08996 * 109.51077 * 296.90936 * 22 21 20 36 36 H 1.09005 * 109.50619 * 176.78615 * 22 21 20 37 37 H 1.09009 * 109.50476 * 298.73313 * 24 23 22 38 38 H 1.08997 * 109.53853 * 178.62665 * 24 23 22 39 39 H 1.09003 * 109.50577 * 302.32073 * 25 20 19 40 40 H 1.08999 * 109.50840 * 62.40976 * 25 20 19 41 41 H 1.07995 * 120.11680 * 180.25765 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5384 1.4401 0.7001 7 6 2.0077 -1.2140 0.0005 8 1 3.0876 -1.2140 0.0010 9 6 1.3036 -2.4333 0.0005 10 7 -0.0200 -2.4492 -0.2060 11 6 -0.6705 -3.5932 -0.2039 12 6 0.0062 -4.7905 0.0111 13 7 1.3102 -4.7975 0.2166 14 6 1.9900 -3.6560 0.2193 15 6 3.4499 -3.6595 0.4496 16 6 4.0264 -2.7212 1.3101 17 6 5.3892 -2.7271 1.5236 18 6 6.1895 -3.6589 0.8883 19 6 5.6260 -4.5971 0.0304 20 7 6.4390 -5.5364 -0.6083 21 6 5.9941 -6.9061 -0.3125 22 6 6.8730 -7.8988 -1.0779 23 8 8.2425 -7.6862 -0.7248 24 6 8.7092 -6.3627 -1.0000 25 6 7.8489 -5.3547 -0.2335 26 6 4.2570 -4.6033 -0.1872 27 1 -0.4850 0.8401 -0.0004 28 1 -1.7368 -3.6037 -0.3751 29 1 -0.5404 -5.7219 0.0097 30 1 3.4049 -1.9915 1.8079 31 1 5.8326 -2.0014 2.1893 32 1 7.2558 -3.6582 1.0591 33 1 6.0804 -7.0936 0.7578 34 1 4.9557 -7.0262 -0.6212 35 1 6.7456 -7.7467 -2.1496 36 1 6.5838 -8.9170 -0.8174 37 1 8.6352 -6.1657 -2.0696 38 1 9.7481 -6.2693 -0.6838 39 1 8.1646 -4.3420 -0.4845 40 1 7.9644 -5.5168 0.8382 41 1 3.8169 -5.3338 -0.8498 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241954708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:40 Heat of formation + Delta-G solvation = 18.052454 kcal Electronic energy + Delta-G solvation = -25157.716531 eV Core-core repulsion = 21615.806811 eV Total energy + Delta-G solvation = -3541.909720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49569 -40.81475 -39.24383 -36.64552 -36.00158 -34.17050 -33.06303 -32.37695 -31.31091 -30.20901 -28.11688 -27.40829 -25.81792 -24.50478 -23.91081 -22.69214 -22.27351 -21.07325 -19.57179 -18.68119 -17.93619 -17.22089 -16.88116 -16.85329 -16.71097 -16.32267 -16.02957 -15.78750 -15.72803 -15.37177 -15.11573 -14.63641 -14.45001 -14.38270 -13.78922 -13.44530 -13.28924 -13.22289 -13.02161 -12.71108 -12.58791 -12.38952 -12.20572 -12.02443 -11.82835 -11.64850 -11.58645 -11.51260 -11.10032 -10.96227 -10.39476 -10.10150 -9.45880 -9.22754 -8.74655 -8.45162 -6.64096 0.14023 0.56078 0.78360 1.19125 1.38444 1.50551 1.54646 2.15993 2.56875 2.73617 2.90250 2.99025 3.70840 3.75821 3.83155 3.90189 4.02817 4.12166 4.15036 4.20785 4.26279 4.27744 4.41747 4.49852 4.56037 4.62870 4.66057 4.70485 4.76106 4.77658 4.87927 4.93359 5.00619 5.09245 5.11176 5.26875 5.31955 5.60569 5.74083 5.80644 5.92107 5.99897 6.12005 6.12542 6.36939 6.45639 6.69426 7.28529 7.85966 8.24482 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016586 B = 0.004062 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.791586 B = 6891.158128 C = 8222.913076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.023 3.977 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.244 1.244 7 C -0.422 4.422 8 H 0.108 0.892 9 C 0.191 3.809 10 N -0.489 5.489 11 C 0.076 3.924 12 C -0.122 4.122 13 N -0.428 5.428 14 C -0.045 4.045 15 C 0.020 3.980 16 C -0.138 4.138 17 C -0.093 4.093 18 C -0.176 4.176 19 C 0.102 3.898 20 N -0.496 5.496 21 C 0.021 3.979 22 C 0.068 3.932 23 O -0.399 6.399 24 C 0.063 3.937 25 C 0.012 3.988 26 C -0.135 4.135 27 H 0.287 0.713 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.539 -5.544 0.332 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.201 4.201 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.167 1.167 7 C -0.452 4.452 8 H 0.125 0.875 9 C 0.066 3.934 10 N -0.206 5.206 11 C -0.094 4.094 12 C -0.283 4.283 13 N -0.141 5.141 14 C -0.192 4.192 15 C 0.018 3.982 16 C -0.158 4.158 17 C -0.111 4.111 18 C -0.197 4.197 19 C 0.005 3.995 20 N -0.213 5.213 21 C -0.105 4.105 22 C -0.008 4.008 23 O -0.318 6.318 24 C -0.014 4.014 25 C -0.115 4.115 26 C -0.156 4.156 27 H 0.098 0.902 28 H 0.178 0.822 29 H 0.179 0.821 30 H 0.134 0.866 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.427 -5.540 -0.128 15.455 hybrid contribution -0.969 0.659 0.458 1.258 sum 13.459 -4.881 0.330 14.320 Atomic orbital electron populations 1.70112 1.09220 1.30229 1.26895 1.27162 0.95718 1.04897 0.92280 0.85158 0.79600 0.75136 0.79846 1.18730 1.18831 1.16706 1.20204 0.95811 0.89475 1.39739 0.87459 1.19664 0.89362 0.93634 0.90734 1.69472 1.08211 1.26285 1.16644 1.24045 1.01322 0.90007 0.94069 1.23105 0.91156 0.99162 1.14855 1.67765 1.09060 1.29454 1.07802 1.20597 0.94318 0.90179 1.14057 1.18266 0.89758 0.94855 0.95336 1.21356 0.95946 0.99197 0.99320 1.21150 0.92192 0.98550 0.99207 1.21497 1.01202 0.98388 0.98601 1.18796 0.91313 0.95494 0.93929 1.59368 1.03505 1.03067 1.55341 1.22932 1.00900 0.87107 0.99573 1.22755 0.80326 0.99085 0.98680 1.87961 1.26918 1.31309 1.85564 1.22875 0.98599 0.80459 0.99474 1.23086 0.86360 1.02401 0.99635 1.20694 0.92204 1.00423 1.02321 0.90187 0.82240 0.82132 0.86553 0.83160 0.82938 0.93701 0.89970 0.91839 0.86230 0.91981 0.85511 0.87721 0.92581 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.28 11.54 21.86 0.25 -38.03 16 2 C 0.02 1.13 5.49 85.33 0.47 1.60 16 3 Si 0.98 35.66 29.56 68.60 2.03 37.69 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.24 -8.31 7.11 99.48 0.71 -7.61 16 7 C -0.42 -21.89 7.45 23.37 0.17 -21.72 16 8 H 0.11 5.24 5.37 -2.92 -0.02 5.23 16 9 C 0.19 10.52 6.51 40.35 0.26 10.79 16 10 N -0.49 -27.11 8.12 -187.85 -1.53 -28.64 16 11 C 0.08 3.63 11.22 84.96 0.95 4.59 16 12 C -0.12 -5.63 11.22 84.90 0.95 -4.68 16 13 N -0.43 -21.61 10.30 -182.29 -1.88 -23.49 16 14 C -0.05 -2.34 6.42 42.43 0.27 -2.07 16 15 C 0.02 0.90 5.28 -20.06 -0.11 0.80 16 16 C -0.14 -5.57 7.54 22.57 0.17 -5.40 16 17 C -0.09 -2.90 10.02 22.21 0.22 -2.68 16 18 C -0.18 -5.09 8.82 22.48 0.20 -4.89 16 19 C 0.10 3.34 5.64 38.18 0.22 3.55 16 20 N -0.50 -13.57 4.77 -694.43 -3.31 -16.88 16 21 C 0.02 0.53 5.40 86.31 0.47 0.99 16 22 C 0.07 1.38 7.01 72.01 0.50 1.89 16 23 O -0.40 -8.53 10.83 -148.98 -1.61 -10.14 16 24 C 0.06 1.07 7.01 72.02 0.50 1.58 16 25 C 0.01 0.24 4.33 86.31 0.37 0.61 16 26 C -0.13 -5.46 8.82 22.68 0.20 -5.26 16 27 H 0.29 13.21 8.29 -92.71 -0.77 12.44 16 28 H 0.16 6.40 8.06 -2.91 -0.02 6.38 16 29 H 0.16 6.13 8.06 -2.91 -0.02 6.11 16 30 H 0.12 4.97 6.72 -2.91 -0.02 4.95 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.15 3.28 5.79 -2.91 -0.02 3.27 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 2.28 6.84 -2.39 -0.02 2.26 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 38 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 1.85 7.22 -2.39 -0.02 1.84 16 40 H 0.06 1.12 7.53 -2.39 -0.02 1.10 16 41 H 0.10 4.39 7.18 -2.91 -0.02 4.37 16 Total: -1.00 -66.93 334.43 0.84 -66.09 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 1.06 Total: 33.70 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 5.83 Total: -20.30 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -6.46 Total: -107.04 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -1.61 Total: -10.14 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -66.93 0.84 -66.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241954708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.144 kcal (2) G-P(sol) polarization free energy of solvation -66.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds