Wall clock time and date at job start Fri Apr 10 2020 22:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47635 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47153 * 119.99737 * 3 2 1 6 6 H 1.48501 * 109.46789 * 239.99166 * 3 2 1 7 7 C 1.40049 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00523 * 359.33599 * 7 2 1 9 9 C 1.41328 * 119.99534 * 179.32599 * 7 2 1 10 10 C 1.40863 * 120.14650 * 180.84519 * 9 7 2 11 11 N 1.31861 * 119.96243 * 179.97438 * 10 9 7 12 12 C 1.32207 * 120.27936 * 0.02562 * 11 10 9 13 13 C 1.39986 * 120.30248 * 359.97438 * 12 11 10 14 14 C 1.48306 * 119.98245 * 179.97438 * 13 12 11 15 15 C 1.39450 * 120.08866 * 179.97438 * 14 13 12 16 16 C 1.38026 * 120.02620 * 180.02562 * 15 14 13 17 17 C 1.38226 * 120.20264 * 0.02730 * 16 15 14 18 18 C 1.38977 * 120.18196 * 359.97438 * 17 16 15 19 19 N 1.39686 * 120.01257 * 179.97438 * 18 17 16 20 20 C 1.47019 * 110.99621 * 123.63829 * 19 18 17 21 21 C 1.53098 * 109.25636 * 177.61027 * 20 19 18 22 22 O 1.43020 * 109.26275 * 56.84408 * 21 20 19 23 23 C 1.43011 * 113.73355 * 301.33179 * 22 21 20 24 24 C 1.47014 * 111.00270 * 0.02562 * 19 18 17 25 25 C 1.38717 * 119.97118 * 359.72034 * 18 17 16 26 26 N 1.32545 * 120.03215 * 359.74879 * 13 12 11 27 27 H 0.97002 * 119.99856 * 174.76274 * 1 2 3 28 28 H 1.07996 * 120.01705 * 359.95439 * 10 9 7 29 29 H 1.08004 * 119.84520 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.98755 * 359.97438 * 15 14 13 31 31 H 1.08002 * 119.90056 * 180.02562 * 16 15 14 32 32 H 1.07997 * 119.90916 * 179.97438 * 17 16 15 33 33 H 1.09008 * 109.50359 * 297.53807 * 20 19 18 34 34 H 1.08995 * 109.51386 * 57.67240 * 20 19 18 35 35 H 1.08995 * 109.50414 * 296.90620 * 21 20 19 36 36 H 1.09007 * 109.50705 * 176.77836 * 21 20 19 37 37 H 1.08999 * 109.51176 * 298.72668 * 23 22 21 38 38 H 1.09004 * 109.53494 * 178.62420 * 23 22 21 39 39 H 1.09007 * 109.50029 * 302.32348 * 24 19 18 40 40 H 1.08994 * 109.50659 * 62.40818 * 24 19 18 41 41 H 1.07997 * 120.10089 * 180.27883 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6965 1.2125 6 1 3.0952 1.6963 -1.2124 7 6 2.0076 -1.2129 0.0005 8 1 1.4677 -2.1481 0.0118 9 6 3.4208 -1.2129 -0.0139 10 6 4.1281 -2.4310 -0.0313 11 7 5.4466 -2.4267 -0.0452 12 6 6.1096 -1.2829 -0.0424 13 6 5.4182 -0.0658 -0.0251 14 6 6.1691 1.2131 -0.0214 15 6 5.4827 2.4268 -0.0047 16 6 6.1828 3.6163 -0.0018 17 6 7.5650 3.6097 -0.0160 18 6 8.2578 2.4050 -0.0327 19 7 9.6546 2.4024 -0.0475 20 6 10.1920 1.6323 1.0836 21 6 11.7202 1.6053 0.9955 22 8 12.2150 2.9470 0.9701 23 6 11.7123 3.7253 -0.1193 24 6 10.1841 3.7739 -0.0419 25 6 7.5617 1.2052 -0.0293 26 7 4.0929 -0.0558 -0.0165 27 1 -0.4850 -0.8366 -0.0767 28 1 3.5907 -3.3677 -0.0330 29 1 7.1896 -1.2876 -0.0542 30 1 4.4027 2.4361 0.0051 31 1 5.6491 4.5552 0.0115 32 1 8.1080 4.5432 -0.0141 33 1 9.8896 2.1017 2.0199 34 1 9.8072 0.6132 1.0458 35 1 12.0231 1.0883 0.0851 36 1 12.1257 1.0843 1.8629 37 1 12.0151 3.2701 -1.0622 38 1 12.1121 4.7376 -0.0590 39 1 9.7934 4.3183 -0.9016 40 1 9.8810 4.2773 0.8761 41 1 8.0979 0.2678 -0.0377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241954774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:45 Heat of formation + Delta-G solvation = 25.725080 kcal Electronic energy + Delta-G solvation = -25072.474053 eV Core-core repulsion = 21530.897043 eV Total energy + Delta-G solvation = -3541.577010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61105 -39.58099 -38.35151 -35.76468 -34.34728 -32.99771 -32.15310 -31.45527 -30.25447 -29.12021 -26.78121 -25.94689 -24.91861 -23.58469 -22.48752 -21.66798 -20.92345 -20.01239 -18.61611 -17.79262 -16.56195 -16.44002 -16.18813 -15.61791 -15.58456 -15.36419 -14.99931 -14.95518 -14.53294 -13.87295 -13.73865 -13.61222 -13.33449 -13.08574 -12.74776 -12.54944 -12.31633 -11.90578 -11.83346 -11.68566 -11.29028 -11.20541 -11.03056 -10.90075 -10.75912 -10.29983 -9.99482 -9.82187 -9.61228 -9.45278 -9.20352 -8.95298 -7.98253 -7.85657 -7.67540 -7.33573 -5.05988 1.08571 1.56129 2.35569 2.56517 3.37211 3.40639 3.50191 3.58009 3.80663 4.00052 4.19061 4.50849 4.54148 4.63251 4.69767 4.83383 4.87252 4.99399 5.05664 5.17476 5.24916 5.32030 5.33340 5.41931 5.45227 5.52640 5.60743 5.65182 5.66618 5.70890 5.96020 6.01333 6.09842 6.28288 6.47647 6.59380 6.65973 6.75799 6.79536 6.88914 6.95745 7.15589 7.20370 7.30315 7.75961 7.92619 8.28982 8.70845 9.18572 9.74617 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.003764 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.418726 B = 7437.916405 C = 8536.693553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.040 3.960 3 Si 1.146 2.854 4 H -0.325 1.325 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.448 4.448 8 H 0.091 0.909 9 C 0.201 3.799 10 C -0.038 4.038 11 N -0.419 5.419 12 C -0.103 4.103 13 C 0.167 3.833 14 C -0.004 4.004 15 C -0.117 4.117 16 C -0.101 4.101 17 C -0.167 4.167 18 C 0.097 3.903 19 N -0.486 5.486 20 C 0.018 3.982 21 C 0.063 3.937 22 O -0.386 6.386 23 C 0.063 3.937 24 C 0.013 3.987 25 C -0.116 4.116 26 N -0.538 5.538 27 H 0.287 0.713 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.290 8.194 0.627 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.183 4.183 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.481 4.481 8 H 0.109 0.891 9 C 0.076 3.924 10 C -0.210 4.210 11 N -0.130 5.130 12 C -0.259 4.259 13 C 0.024 3.976 14 C -0.006 4.006 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.188 4.188 18 C 0.001 3.999 19 N -0.203 5.203 20 C -0.108 4.108 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.014 4.014 24 C -0.114 4.114 25 C -0.137 4.137 26 N -0.261 5.261 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.358 9.517 0.405 19.800 hybrid contribution -0.561 -1.706 0.290 1.819 sum 16.797 7.811 0.694 18.537 Atomic orbital electron populations 1.70639 1.08123 1.33198 1.28925 1.27897 0.95357 1.06353 0.88726 0.82242 0.70234 0.69836 0.79541 1.25863 1.20994 1.20849 1.20842 0.89877 0.96753 1.40626 0.89130 1.19408 0.94878 0.88048 0.90021 1.23179 0.89906 0.97952 1.09991 1.67713 1.09439 1.29471 1.06345 1.22444 0.99065 0.87823 1.16546 1.20238 0.90490 0.92376 0.94459 1.18498 0.91854 0.91921 0.98323 1.21743 1.01348 0.91456 0.99016 1.20965 0.93594 0.98026 0.99401 1.21256 0.94770 0.96802 1.05940 1.18654 0.87407 0.93633 1.00218 1.59382 1.05161 1.14098 1.41618 1.22969 0.96209 0.99949 0.91690 1.22724 0.91903 0.83924 1.02858 1.87989 1.69303 1.23784 1.49350 1.22706 0.91821 0.96518 0.90370 1.22961 0.96340 0.89450 1.02645 1.20775 0.92752 0.96901 1.03292 1.67113 1.06680 1.28250 1.24053 0.90110 0.84126 0.84556 0.85061 0.85734 0.85812 0.92880 0.88637 0.91964 0.88016 0.92081 0.88161 0.88853 0.92701 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.49 13.65 55.55 0.76 -19.73 16 2 C 0.04 1.04 5.52 -17.34 -0.10 0.94 16 3 Si 1.15 27.36 22.20 -169.99 -3.77 23.59 16 4 H -0.33 -7.60 7.11 56.52 0.40 -7.20 16 5 H -0.28 -6.70 6.61 56.52 0.37 -6.32 16 6 H -0.28 -6.68 6.59 56.52 0.37 -6.30 16 7 C -0.45 -11.63 9.60 -37.73 -0.36 -11.99 16 8 H 0.09 2.28 8.05 -52.49 -0.42 1.86 16 9 C 0.20 5.14 6.42 -84.84 -0.55 4.60 16 10 C -0.04 -0.91 10.98 -16.55 -0.18 -1.09 16 11 N -0.42 -9.71 10.47 -12.06 -0.13 -9.84 16 12 C -0.10 -2.23 10.61 -16.74 -0.18 -2.40 16 13 C 0.17 3.79 6.74 -82.76 -0.56 3.24 16 14 C 0.00 -0.07 5.87 -104.93 -0.62 -0.69 16 15 C -0.12 -2.21 9.57 -39.21 -0.38 -2.59 16 16 C -0.10 -1.52 10.03 -39.66 -0.40 -1.92 16 17 C -0.17 -2.24 8.81 -39.31 -0.35 -2.58 16 18 C 0.10 1.37 5.64 -83.83 -0.47 0.90 16 19 N -0.49 -5.73 4.77 -170.84 -0.82 -6.54 16 20 C 0.02 0.19 5.40 -3.71 -0.02 0.17 16 21 C 0.06 0.56 7.01 37.21 0.26 0.82 16 22 O -0.39 -3.96 10.83 -35.23 -0.38 -4.35 16 23 C 0.06 0.53 7.01 37.21 0.26 0.79 16 24 C 0.01 0.13 4.33 -3.71 -0.02 0.11 16 25 C -0.12 -1.87 8.57 -39.03 -0.33 -2.21 16 26 N -0.54 -13.53 4.31 -7.50 -0.03 -13.56 16 27 H 0.29 7.06 8.72 -40.82 -0.36 6.70 16 28 H 0.14 3.02 8.06 -52.49 -0.42 2.59 16 29 H 0.14 2.51 6.19 -52.48 -0.32 2.18 16 30 H 0.13 2.72 2.48 -52.49 -0.13 2.59 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.31 5.79 -52.49 -0.30 1.00 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.10 0.97 6.84 -51.93 -0.36 0.62 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.80 7.22 -51.93 -0.38 0.42 16 40 H 0.05 0.53 7.53 -51.93 -0.39 0.14 16 41 H 0.13 1.93 5.31 -52.49 -0.28 1.65 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -29.36 323.60 -8.22 -37.58 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.75 Total: 1.89 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.98 Total: -13.92 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.22 Total: -49.67 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.38 Total: -4.35 kcal Atomic # 14 Polarization: 27.36 SS G_CDS: -3.77 Total: 23.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.36 -8.22 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241954774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.305 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds