Wall clock time and date at job start Fri Apr 10 2020 22:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47635 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47153 * 119.99737 * 3 2 1 6 6 H 1.48501 * 109.46789 * 239.99166 * 3 2 1 7 7 C 1.40049 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00523 * 359.33599 * 7 2 1 9 9 C 1.41328 * 119.99534 * 179.32599 * 7 2 1 10 10 C 1.40863 * 120.14650 * 180.84519 * 9 7 2 11 11 N 1.31861 * 119.96243 * 179.97438 * 10 9 7 12 12 C 1.32207 * 120.27936 * 0.02562 * 11 10 9 13 13 C 1.39986 * 120.30248 * 359.97438 * 12 11 10 14 14 C 1.48306 * 119.98245 * 179.97438 * 13 12 11 15 15 C 1.39450 * 120.08866 * 179.97438 * 14 13 12 16 16 C 1.38026 * 120.02620 * 180.02562 * 15 14 13 17 17 C 1.38226 * 120.20264 * 0.02730 * 16 15 14 18 18 C 1.38977 * 120.18196 * 359.97438 * 17 16 15 19 19 N 1.39686 * 120.01257 * 179.97438 * 18 17 16 20 20 C 1.47019 * 110.99621 * 123.63829 * 19 18 17 21 21 C 1.53098 * 109.25636 * 177.61027 * 20 19 18 22 22 O 1.43020 * 109.26275 * 56.84408 * 21 20 19 23 23 C 1.43011 * 113.73355 * 301.33179 * 22 21 20 24 24 C 1.47014 * 111.00270 * 0.02562 * 19 18 17 25 25 C 1.38717 * 119.97118 * 359.72034 * 18 17 16 26 26 N 1.32545 * 120.03215 * 359.74879 * 13 12 11 27 27 H 0.97002 * 119.99856 * 174.76274 * 1 2 3 28 28 H 1.07996 * 120.01705 * 359.95439 * 10 9 7 29 29 H 1.08004 * 119.84520 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.98755 * 359.97438 * 15 14 13 31 31 H 1.08002 * 119.90056 * 180.02562 * 16 15 14 32 32 H 1.07997 * 119.90916 * 179.97438 * 17 16 15 33 33 H 1.09008 * 109.50359 * 297.53807 * 20 19 18 34 34 H 1.08995 * 109.51386 * 57.67240 * 20 19 18 35 35 H 1.08995 * 109.50414 * 296.90620 * 21 20 19 36 36 H 1.09007 * 109.50705 * 176.77836 * 21 20 19 37 37 H 1.08999 * 109.51176 * 298.72668 * 23 22 21 38 38 H 1.09004 * 109.53494 * 178.62420 * 23 22 21 39 39 H 1.09007 * 109.50029 * 302.32348 * 24 19 18 40 40 H 1.08994 * 109.50659 * 62.40818 * 24 19 18 41 41 H 1.07997 * 120.10089 * 180.27883 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6965 1.2125 6 1 3.0952 1.6963 -1.2124 7 6 2.0076 -1.2129 0.0005 8 1 1.4677 -2.1481 0.0118 9 6 3.4208 -1.2129 -0.0139 10 6 4.1281 -2.4310 -0.0313 11 7 5.4466 -2.4267 -0.0452 12 6 6.1096 -1.2829 -0.0424 13 6 5.4182 -0.0658 -0.0251 14 6 6.1691 1.2131 -0.0214 15 6 5.4827 2.4268 -0.0047 16 6 6.1828 3.6163 -0.0018 17 6 7.5650 3.6097 -0.0160 18 6 8.2578 2.4050 -0.0327 19 7 9.6546 2.4024 -0.0475 20 6 10.1920 1.6323 1.0836 21 6 11.7202 1.6053 0.9955 22 8 12.2150 2.9470 0.9701 23 6 11.7123 3.7253 -0.1193 24 6 10.1841 3.7739 -0.0419 25 6 7.5617 1.2052 -0.0293 26 7 4.0929 -0.0558 -0.0165 27 1 -0.4850 -0.8366 -0.0767 28 1 3.5907 -3.3677 -0.0330 29 1 7.1896 -1.2876 -0.0542 30 1 4.4027 2.4361 0.0051 31 1 5.6491 4.5552 0.0115 32 1 8.1080 4.5432 -0.0141 33 1 9.8896 2.1017 2.0199 34 1 9.8072 0.6132 1.0458 35 1 12.0231 1.0883 0.0851 36 1 12.1257 1.0843 1.8629 37 1 12.0151 3.2701 -1.0622 38 1 12.1121 4.7376 -0.0590 39 1 9.7934 4.3183 -0.9016 40 1 9.8810 4.2773 0.8761 41 1 8.0979 0.2678 -0.0377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241954774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:44 Heat of formation + Delta-G solvation = 6.113518 kcal Electronic energy + Delta-G solvation = -25073.324474 eV Core-core repulsion = 21530.897043 eV Total energy + Delta-G solvation = -3542.427431 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73773 -41.13622 -39.42919 -36.78308 -36.24708 -34.69354 -33.64797 -32.38767 -31.39896 -30.54526 -28.03358 -27.44989 -26.02110 -25.00315 -23.97511 -22.75726 -22.27857 -21.10407 -20.54334 -18.99176 -18.00648 -17.84084 -17.17240 -17.02408 -16.75384 -16.34624 -16.04091 -15.87214 -15.72637 -15.50750 -15.31185 -14.82480 -14.76445 -14.64039 -14.39133 -13.70157 -13.51678 -13.19456 -13.12624 -13.08537 -12.75099 -12.46655 -12.32501 -12.04469 -11.83744 -11.71109 -11.59486 -11.48031 -11.10734 -11.01769 -10.60421 -10.40091 -9.78596 -9.42110 -9.24372 -8.88758 -7.01676 -0.38210 0.35607 0.51150 0.93241 1.45055 1.59375 1.90312 2.29222 2.40870 2.54554 2.83179 2.93455 3.29273 3.45509 3.75244 3.80755 3.85497 3.88305 4.01501 4.07112 4.12986 4.20588 4.22957 4.29524 4.36796 4.48858 4.54432 4.60214 4.69314 4.71443 4.78816 4.84860 4.91838 4.95286 4.99976 5.14141 5.22541 5.32926 5.38333 5.56415 5.61953 5.83049 5.87809 6.04310 6.14959 6.20034 6.35690 6.85501 7.32921 7.78664 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.003764 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.418726 B = 7437.916405 C = 8536.693553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.016 3.984 3 Si 1.178 2.822 4 H -0.321 1.321 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.477 4.477 8 H 0.086 0.914 9 C 0.189 3.811 10 C -0.054 4.054 11 N -0.423 5.423 12 C -0.091 4.091 13 C 0.157 3.843 14 C -0.035 4.035 15 C -0.148 4.148 16 C -0.096 4.096 17 C -0.152 4.152 18 C 0.105 3.895 19 N -0.491 5.491 20 C 0.016 3.984 21 C 0.065 3.935 22 O -0.402 6.402 23 C 0.062 3.938 24 C 0.009 3.991 25 C -0.114 4.114 26 N -0.556 5.556 27 H 0.289 0.711 28 H 0.157 0.843 29 H 0.173 0.827 30 H 0.107 0.893 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.875 10.018 0.587 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.203 4.203 3 Si 1.013 2.987 4 H -0.254 1.254 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.510 4.510 8 H 0.104 0.896 9 C 0.063 3.937 10 C -0.223 4.223 11 N -0.134 5.134 12 C -0.248 4.248 13 C 0.015 3.985 14 C -0.038 4.038 15 C -0.167 4.167 16 C -0.114 4.114 17 C -0.173 4.173 18 C 0.008 3.992 19 N -0.207 5.207 20 C -0.109 4.109 21 C -0.012 4.012 22 O -0.320 6.320 23 C -0.015 4.015 24 C -0.117 4.117 25 C -0.136 4.136 26 N -0.279 5.279 27 H 0.100 0.900 28 H 0.174 0.826 29 H 0.190 0.810 30 H 0.125 0.875 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 20.942 11.319 0.366 23.808 hybrid contribution -1.317 -2.201 0.291 2.581 sum 19.625 9.118 0.656 21.650 Atomic orbital electron populations 1.70639 1.08233 1.33359 1.30852 1.28447 0.95669 1.07718 0.88500 0.81814 0.69317 0.68653 0.78963 1.25380 1.21655 1.21563 1.20840 0.90417 0.96675 1.43109 0.89611 1.19606 0.95028 0.89028 0.90000 1.23365 0.90329 0.98075 1.10578 1.67796 1.09086 1.30123 1.06421 1.23092 1.00733 0.87160 1.13848 1.20874 0.89911 0.94545 0.93199 1.18479 0.93062 0.90627 1.01591 1.21716 1.00526 0.92984 1.01498 1.21250 0.94460 0.97701 0.98020 1.21663 0.94171 0.98103 1.03361 1.18817 0.88738 0.93142 0.98497 1.59371 1.03574 1.15788 1.42000 1.23031 0.97307 0.99730 0.90855 1.22796 0.90675 0.83787 1.03910 1.87979 1.69595 1.24331 1.50138 1.22855 0.90985 0.97603 0.90007 1.23119 0.97153 0.88097 1.03356 1.20816 0.91359 0.98404 1.02976 1.67089 1.08182 1.28266 1.24378 0.89984 0.82619 0.80971 0.87507 0.82942 0.82189 0.93429 0.88568 0.91561 0.86372 0.91833 0.85880 0.87524 0.92384 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.38 13.65 21.84 0.30 -43.08 16 2 C 0.02 0.88 5.52 85.29 0.47 1.35 16 3 Si 1.18 57.40 22.20 68.60 1.52 58.93 16 4 H -0.32 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.29 -14.06 6.61 99.48 0.66 -13.41 16 6 H -0.29 -14.04 6.59 99.48 0.66 -13.39 16 7 C -0.48 -25.74 9.60 23.47 0.23 -25.51 16 8 H 0.09 4.54 8.05 -2.91 -0.02 4.51 16 9 C 0.19 9.90 6.42 40.24 0.26 10.16 16 10 C -0.05 -2.60 10.98 85.33 0.94 -1.66 16 11 N -0.42 -19.27 10.47 -192.05 -2.01 -21.28 16 12 C -0.09 -3.84 10.61 85.06 0.90 -2.94 16 13 C 0.16 7.07 6.74 42.14 0.28 7.36 16 14 C -0.04 -1.35 5.87 -20.06 -0.12 -1.47 16 15 C -0.15 -5.49 9.57 22.51 0.22 -5.28 16 16 C -0.10 -2.63 10.03 22.22 0.22 -2.41 16 17 C -0.15 -3.48 8.81 22.44 0.20 -3.28 16 18 C 0.11 2.61 5.64 38.18 0.22 2.83 16 19 N -0.49 -9.74 4.77 -694.41 -3.31 -13.06 16 20 C 0.02 0.29 5.40 86.31 0.47 0.76 16 21 C 0.07 0.95 7.01 72.01 0.50 1.46 16 22 O -0.40 -6.87 10.83 -148.98 -1.61 -8.48 16 23 C 0.06 0.79 7.01 72.01 0.50 1.30 16 24 C 0.01 0.14 4.33 86.31 0.37 0.51 16 25 C -0.11 -3.42 8.57 22.63 0.19 -3.23 16 26 N -0.56 -28.40 4.31 -177.65 -0.77 -29.16 16 27 H 0.29 14.74 8.72 -92.71 -0.81 13.93 16 28 H 0.16 6.78 8.06 -2.91 -0.02 6.75 16 29 H 0.17 5.86 6.19 -2.91 -0.02 5.84 16 30 H 0.11 4.47 2.48 -2.91 -0.01 4.46 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 32 H 0.16 2.50 5.79 -2.91 -0.02 2.48 16 33 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.10 1.68 6.84 -2.39 -0.02 1.66 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.11 1.29 7.22 -2.38 -0.02 1.27 16 40 H 0.06 0.85 7.53 -2.39 -0.02 0.83 16 41 H 0.14 3.77 5.31 -2.91 -0.02 3.75 16 Total: -1.00 -64.68 323.60 0.91 -63.77 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.93 Total: 12.43 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 5.85 Total: -20.05 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.79 Total: -106.58 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -1.61 Total: -8.48 kcal Atomic # 14 Polarization: 57.40 SS G_CDS: 1.52 Total: 58.93 kcal Total: -64.68 0.91 -63.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241954774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.884 kcal (2) G-P(sol) polarization free energy of solvation -64.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds