Wall clock time and date at job start Fri Apr 10 2020 22:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00142 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99967 * 3 2 1 7 7 C 1.40131 * 120.00089 * 180.27360 * 2 1 3 8 8 H 1.08001 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.41090 * 120.00194 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.13270 * 359.72799 * 9 7 2 11 11 C 1.31585 * 120.83353 * 179.71433 * 10 9 7 12 12 C 1.40432 * 119.09114 * 0.55034 * 11 10 9 13 13 C 1.47936 * 120.79004 * 179.70365 * 12 11 10 14 14 C 1.39729 * 120.11100 * 179.74452 * 13 12 11 15 15 C 1.37937 * 120.00066 * 179.73970 * 14 13 12 16 16 C 1.38299 * 120.22406 * 0.51749 * 15 14 13 17 17 C 1.39064 * 120.22582 * 359.76091 * 16 15 14 18 18 N 1.39678 * 120.00077 * 180.02562 * 17 16 15 19 19 C 1.47015 * 110.99776 * 123.61495 * 18 17 16 20 20 C 1.53098 * 109.25647 * 177.60279 * 19 18 17 21 21 O 1.43018 * 109.25893 * 56.85211 * 20 19 18 22 22 C 1.43018 * 113.73344 * 301.32715 * 21 20 19 23 23 C 1.47012 * 111.00222 * 359.97438 * 18 17 16 24 24 C 1.38615 * 119.99446 * 359.97438 * 17 16 15 25 25 C 1.40425 * 118.41829 * 359.72415 * 12 11 10 26 26 N 1.31592 * 119.09375 * 0.02562 * 25 12 11 27 27 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 28 28 H 1.07995 * 120.46103 * 180.24897 * 11 10 9 29 29 H 1.08007 * 119.99859 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.89358 * 180.25355 * 15 14 13 31 31 H 1.08003 * 119.88747 * 179.73625 * 16 15 14 32 32 H 1.08993 * 109.50581 * 297.53909 * 19 18 17 33 33 H 1.08997 * 109.50627 * 57.67230 * 19 18 17 34 34 H 1.08994 * 109.51397 * 296.91367 * 20 19 18 35 35 H 1.09007 * 109.54079 * 176.80211 * 20 19 18 36 36 H 1.08995 * 109.50825 * 298.73056 * 22 21 20 37 37 H 1.09003 * 109.53934 * 178.62730 * 22 21 20 38 38 H 1.08997 * 109.50600 * 302.32364 * 23 18 17 39 39 H 1.08994 * 109.50489 * 62.41606 * 23 18 17 40 40 H 1.07996 * 120.11460 * 180.02562 * 24 17 16 41 41 H 1.07997 * 120.45585 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0073 -1.2135 -0.0058 8 1 3.0873 -1.2136 -0.0062 9 6 1.3019 -2.4354 -0.0122 10 7 -0.0343 -2.4153 -0.0071 11 6 -0.7257 -3.5348 -0.0184 12 6 -0.0404 -4.7605 -0.0242 13 6 -0.7801 -6.0417 -0.0304 14 6 -0.0839 -7.2531 -0.0415 15 6 -0.7758 -8.4463 -0.0418 16 6 -2.1588 -8.4491 -0.0419 17 6 -2.8613 -7.2489 -0.0366 18 7 -4.2580 -7.2572 -0.0361 19 6 -4.7889 -6.5053 1.1102 20 6 -6.3181 -6.4892 1.0390 21 8 -6.8028 -7.8342 1.0025 22 6 -6.3062 -8.5953 -0.1018 23 6 -4.7768 -8.6328 -0.0423 24 6 -2.1752 -6.0445 -0.0308 25 6 1.3637 -4.7412 -0.0237 26 7 1.9876 -3.5826 -0.0172 27 1 -0.4850 0.8401 0.0041 28 1 -1.8054 -3.5115 -0.0182 29 1 0.9962 -7.2551 -0.0461 30 1 -0.2359 -9.3817 -0.0463 31 1 -2.6951 -9.3865 -0.0464 32 1 -4.4727 -6.9836 2.0372 33 1 -4.4124 -5.4828 1.0807 34 1 -6.6352 -5.9635 0.1384 35 1 -6.7187 -5.9817 1.9167 36 1 -6.6228 -8.1309 -1.0356 37 1 -6.6974 -9.6114 -0.0496 38 1 -4.3915 -9.1631 -0.9131 39 1 -4.4597 -9.1453 0.8659 40 1 -2.7188 -5.1113 -0.0262 41 1 1.9239 -5.6645 -0.0277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241959627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:48 Heat of formation + Delta-G solvation = 38.417697 kcal Electronic energy + Delta-G solvation = -24532.972743 eV Core-core repulsion = 20991.946126 eV Total energy + Delta-G solvation = -3541.026617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40369 -39.15416 -38.11451 -35.61627 -34.02094 -32.29356 -31.84160 -31.37046 -30.07444 -28.92537 -26.61450 -26.20330 -24.43773 -23.21970 -22.53809 -21.40599 -20.83686 -19.89829 -18.05348 -17.52925 -16.39534 -16.10896 -16.03084 -15.41063 -15.35626 -15.12337 -14.82688 -14.68098 -14.46085 -13.78780 -13.48215 -13.25893 -13.19113 -12.79002 -12.50816 -12.31561 -12.14741 -11.79153 -11.63975 -11.49487 -11.38217 -11.02590 -10.97542 -10.84522 -10.65437 -10.43999 -10.13152 -9.76987 -9.43055 -9.30250 -9.25755 -8.94540 -7.77630 -7.46217 -7.37522 -6.73664 -4.87025 1.45880 1.78127 2.65439 2.89386 2.94476 2.97292 3.04532 3.54877 3.70050 3.72982 4.22258 4.57909 4.65567 4.77017 4.86497 4.93486 5.10358 5.23553 5.26890 5.36803 5.41359 5.48510 5.55651 5.62693 5.65956 5.72351 5.77918 5.79183 5.85660 5.94588 6.02559 6.18769 6.31806 6.48021 6.67620 6.77152 6.81846 6.88187 6.97038 6.99357 7.11940 7.40834 7.48936 7.58495 7.95798 8.29329 8.37278 8.94310 9.90655 10.09748 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.003021 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.237180 B = 9265.717679 C =10526.428182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.059 3.941 3 Si 0.924 3.076 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.374 4.374 8 H 0.097 0.903 9 C 0.379 3.621 10 N -0.509 5.509 11 C 0.184 3.816 12 C -0.333 4.333 13 C 0.062 3.938 14 C -0.167 4.167 15 C -0.084 4.084 16 C -0.208 4.208 17 C 0.115 3.885 18 N -0.488 5.488 19 C 0.020 3.980 20 C 0.062 3.938 21 O -0.387 6.387 22 C 0.062 3.938 23 C 0.016 3.984 24 C -0.161 4.161 25 C 0.191 3.809 26 N -0.594 5.594 27 H 0.280 0.720 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.121 0.879 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 -11.437 0.701 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.406 4.406 8 H 0.115 0.885 9 C 0.147 3.853 10 N -0.224 5.224 11 C 0.007 3.993 12 C -0.343 4.343 13 C 0.059 3.941 14 C -0.187 4.187 15 C -0.103 4.103 16 C -0.229 4.229 17 C 0.019 3.981 18 N -0.205 5.205 19 C -0.106 4.106 20 C -0.015 4.015 21 O -0.305 6.305 22 C -0.015 4.015 23 C -0.112 4.112 24 C -0.182 4.182 25 C 0.015 3.985 26 N -0.312 5.312 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.674 -10.037 0.433 13.947 hybrid contribution 0.274 -0.545 0.333 0.695 sum -9.400 -10.582 0.766 14.175 Atomic orbital electron populations 1.70112 1.07491 1.28895 1.24969 1.26243 0.95158 1.01817 0.93734 0.86107 0.79935 0.78957 0.80359 1.19854 1.18504 1.18482 1.19503 0.95139 0.87859 1.38142 0.88512 1.19958 0.85994 0.90874 0.88491 1.69348 1.08082 1.26766 1.18228 1.23048 0.99022 0.87940 0.89316 1.19731 0.95233 0.93112 1.26204 1.18550 0.91706 0.92288 0.91550 1.21093 0.99605 0.91718 1.06237 1.20760 0.93593 0.97484 0.98447 1.21017 0.94666 0.96382 1.10873 1.18682 0.86879 0.93889 0.98648 1.59349 1.06159 1.14201 1.40755 1.22927 0.96032 1.00217 0.91411 1.22731 0.92159 0.83733 1.02829 1.87978 1.70145 1.24083 1.48316 1.22707 0.92059 0.96667 0.90032 1.22918 0.96165 0.89585 1.02512 1.20712 0.93485 0.96133 1.07849 1.22698 0.90524 0.95829 0.89428 1.68660 1.40779 0.98465 1.23281 0.90818 0.85216 0.86467 0.86832 0.86699 0.93077 0.88616 0.91999 0.88067 0.92167 0.88299 0.89025 0.92909 0.86128 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.42 11.40 55.56 0.63 -16.79 16 2 C 0.06 1.43 5.50 -17.34 -0.10 1.34 16 3 Si 0.92 17.55 29.56 -169.99 -5.02 12.53 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 7 C -0.37 -9.83 9.35 -37.79 -0.35 -10.19 16 8 H 0.10 2.42 7.85 -52.49 -0.41 2.01 16 9 C 0.38 10.41 7.35 -158.17 -1.16 9.25 16 10 N -0.51 -13.67 7.83 -12.41 -0.10 -13.77 16 11 C 0.18 4.32 10.70 -16.83 -0.18 4.14 16 12 C -0.33 -7.27 5.94 -104.28 -0.62 -7.89 16 13 C 0.06 1.15 5.88 -104.89 -0.62 0.53 16 14 C -0.17 -2.76 9.45 -39.13 -0.37 -3.13 16 15 C -0.08 -1.21 10.02 -39.67 -0.40 -1.60 16 16 C -0.21 -2.94 8.82 -39.25 -0.35 -3.29 16 17 C 0.12 1.75 5.63 -83.84 -0.47 1.28 16 18 N -0.49 -6.42 4.77 -170.86 -0.82 -7.24 16 19 C 0.02 0.24 5.41 -3.71 -0.02 0.22 16 20 C 0.06 0.64 7.01 37.21 0.26 0.90 16 21 O -0.39 -4.40 10.83 -35.23 -0.38 -4.78 16 22 C 0.06 0.59 7.01 37.21 0.26 0.85 16 23 C 0.02 0.17 4.33 -3.71 -0.02 0.15 16 24 C -0.16 -2.76 8.60 -38.97 -0.34 -3.10 16 25 C 0.19 4.31 10.70 -16.83 -0.18 4.13 16 26 N -0.59 -15.40 10.34 -12.41 -0.13 -15.53 16 27 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 28 H 0.13 2.69 6.33 -52.49 -0.33 2.36 16 29 H 0.12 1.79 6.28 -52.48 -0.33 1.46 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.36 5.79 -52.48 -0.30 1.05 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.15 6.85 -51.93 -0.36 0.80 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.90 7.22 -51.93 -0.38 0.52 16 39 H 0.05 0.57 7.53 -51.93 -0.39 0.18 16 40 H 0.12 2.03 5.42 -52.49 -0.28 1.75 16 41 H 0.13 2.52 6.33 -52.49 -0.33 2.19 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -29.91 334.40 -10.20 -40.12 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.79 Total: 6.82 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -4.64 Total: -6.40 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.41 Total: -53.32 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.38 Total: -4.78 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.02 Total: 12.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.91 -10.20 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241959627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.534 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds