Wall clock time and date at job start Fri Apr 10 2020 22:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00142 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99967 * 3 2 1 7 7 C 1.40131 * 120.00089 * 180.27360 * 2 1 3 8 8 H 1.08001 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.41090 * 120.00194 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.13270 * 359.72799 * 9 7 2 11 11 C 1.31585 * 120.83353 * 179.71433 * 10 9 7 12 12 C 1.40432 * 119.09114 * 0.55034 * 11 10 9 13 13 C 1.47936 * 120.79004 * 179.70365 * 12 11 10 14 14 C 1.39729 * 120.11100 * 179.74452 * 13 12 11 15 15 C 1.37937 * 120.00066 * 179.73970 * 14 13 12 16 16 C 1.38299 * 120.22406 * 0.51749 * 15 14 13 17 17 C 1.39064 * 120.22582 * 359.76091 * 16 15 14 18 18 N 1.39678 * 120.00077 * 180.02562 * 17 16 15 19 19 C 1.47015 * 110.99776 * 123.61495 * 18 17 16 20 20 C 1.53098 * 109.25647 * 177.60279 * 19 18 17 21 21 O 1.43018 * 109.25893 * 56.85211 * 20 19 18 22 22 C 1.43018 * 113.73344 * 301.32715 * 21 20 19 23 23 C 1.47012 * 111.00222 * 359.97438 * 18 17 16 24 24 C 1.38615 * 119.99446 * 359.97438 * 17 16 15 25 25 C 1.40425 * 118.41829 * 359.72415 * 12 11 10 26 26 N 1.31592 * 119.09375 * 0.02562 * 25 12 11 27 27 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 28 28 H 1.07995 * 120.46103 * 180.24897 * 11 10 9 29 29 H 1.08007 * 119.99859 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.89358 * 180.25355 * 15 14 13 31 31 H 1.08003 * 119.88747 * 179.73625 * 16 15 14 32 32 H 1.08993 * 109.50581 * 297.53909 * 19 18 17 33 33 H 1.08997 * 109.50627 * 57.67230 * 19 18 17 34 34 H 1.08994 * 109.51397 * 296.91367 * 20 19 18 35 35 H 1.09007 * 109.54079 * 176.80211 * 20 19 18 36 36 H 1.08995 * 109.50825 * 298.73056 * 22 21 20 37 37 H 1.09003 * 109.53934 * 178.62730 * 22 21 20 38 38 H 1.08997 * 109.50600 * 302.32364 * 23 18 17 39 39 H 1.08994 * 109.50489 * 62.41606 * 23 18 17 40 40 H 1.07996 * 120.11460 * 180.02562 * 24 17 16 41 41 H 1.07997 * 120.45585 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0073 -1.2135 -0.0058 8 1 3.0873 -1.2136 -0.0062 9 6 1.3019 -2.4354 -0.0122 10 7 -0.0343 -2.4153 -0.0071 11 6 -0.7257 -3.5348 -0.0184 12 6 -0.0404 -4.7605 -0.0242 13 6 -0.7801 -6.0417 -0.0304 14 6 -0.0839 -7.2531 -0.0415 15 6 -0.7758 -8.4463 -0.0418 16 6 -2.1588 -8.4491 -0.0419 17 6 -2.8613 -7.2489 -0.0366 18 7 -4.2580 -7.2572 -0.0361 19 6 -4.7889 -6.5053 1.1102 20 6 -6.3181 -6.4892 1.0390 21 8 -6.8028 -7.8342 1.0025 22 6 -6.3062 -8.5953 -0.1018 23 6 -4.7768 -8.6328 -0.0423 24 6 -2.1752 -6.0445 -0.0308 25 6 1.3637 -4.7412 -0.0237 26 7 1.9876 -3.5826 -0.0172 27 1 -0.4850 0.8401 0.0041 28 1 -1.8054 -3.5115 -0.0182 29 1 0.9962 -7.2551 -0.0461 30 1 -0.2359 -9.3817 -0.0463 31 1 -2.6951 -9.3865 -0.0464 32 1 -4.4727 -6.9836 2.0372 33 1 -4.4124 -5.4828 1.0807 34 1 -6.6352 -5.9635 0.1384 35 1 -6.7187 -5.9817 1.9167 36 1 -6.6228 -8.1309 -1.0356 37 1 -6.6974 -9.6114 -0.0496 38 1 -4.3915 -9.1631 -0.9131 39 1 -4.4597 -9.1453 0.8659 40 1 -2.7188 -5.1113 -0.0262 41 1 1.9239 -5.6645 -0.0277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241959627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:47 Heat of formation + Delta-G solvation = 19.958662 kcal Electronic energy + Delta-G solvation = -24533.773187 eV Core-core repulsion = 20991.946126 eV Total energy + Delta-G solvation = -3541.827061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49768 -40.82405 -39.29876 -36.73766 -35.74708 -33.98697 -33.43430 -32.37963 -31.25386 -30.47859 -27.95377 -27.55257 -25.48836 -24.89185 -24.08096 -22.55341 -22.19251 -21.06959 -19.85446 -18.68402 -17.94897 -17.34695 -17.17888 -16.73191 -16.47420 -16.28020 -16.08766 -15.74777 -15.70720 -15.06640 -15.02319 -14.70031 -14.54111 -14.42876 -13.94678 -13.59766 -13.27598 -13.16618 -12.92199 -12.80233 -12.68930 -12.50244 -12.20239 -12.06185 -11.95067 -11.61026 -11.46983 -11.25127 -11.10109 -10.98527 -10.59662 -10.32816 -9.34425 -9.15004 -8.75527 -8.52617 -6.76448 -0.02357 0.54257 0.98594 1.12160 1.38408 1.53128 1.54784 2.16097 2.53779 2.67898 2.89823 3.07928 3.79951 3.84713 3.87008 3.87880 3.91129 3.96726 4.07238 4.11511 4.23849 4.25883 4.33377 4.34353 4.50631 4.53726 4.61269 4.63503 4.70704 4.75135 4.86478 4.93586 4.96885 5.10318 5.15403 5.25516 5.32223 5.57132 5.65891 5.83222 5.92787 5.99647 6.07189 6.11472 6.36113 6.42662 6.51035 7.08935 8.11855 8.26089 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.003021 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.237180 B = 9265.717679 C =10526.428182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.095 0.905 9 C 0.351 3.649 10 N -0.539 5.539 11 C 0.163 3.837 12 C -0.316 4.316 13 C 0.029 3.971 14 C -0.170 4.170 15 C -0.080 4.080 16 C -0.195 4.195 17 C 0.112 3.888 18 N -0.498 5.498 19 C 0.020 3.980 20 C 0.066 3.934 21 O -0.400 6.400 22 C 0.061 3.939 23 C 0.014 3.986 24 C -0.168 4.168 25 C 0.176 3.824 26 N -0.619 5.619 27 H 0.289 0.711 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -13.798 0.644 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.205 4.205 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.450 4.450 8 H 0.113 0.887 9 C 0.117 3.883 10 N -0.256 5.256 11 C -0.012 4.012 12 C -0.325 4.325 13 C 0.027 3.973 14 C -0.189 4.189 15 C -0.098 4.098 16 C -0.216 4.216 17 C 0.015 3.985 18 N -0.214 5.214 19 C -0.105 4.105 20 C -0.011 4.011 21 O -0.319 6.319 22 C -0.015 4.015 23 C -0.113 4.113 24 C -0.189 4.189 25 C 0.003 3.997 26 N -0.338 5.338 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.759 -12.475 0.376 16.478 hybrid contribution 0.385 -0.208 0.339 0.553 sum -10.374 -12.683 0.715 16.401 Atomic orbital electron populations 1.70175 1.09090 1.30321 1.25930 1.27190 0.95971 1.04903 0.92461 0.84948 0.78511 0.74009 0.80389 1.18403 1.18011 1.18045 1.19802 0.95328 0.88960 1.40931 0.88693 1.20372 0.86603 0.91873 0.89428 1.69307 1.08223 1.28338 1.19737 1.23446 0.99926 0.88247 0.89549 1.20020 0.95252 0.94158 1.23104 1.18493 0.92322 0.91630 0.94886 1.21288 1.00286 0.91672 1.05699 1.21150 0.93859 0.98014 0.96775 1.21463 0.94892 0.97128 1.08105 1.18835 0.88106 0.93555 0.97998 1.59331 1.04986 1.15991 1.41090 1.22935 0.97284 0.99570 0.90748 1.22771 0.90763 0.83759 1.03797 1.87968 1.70346 1.24419 1.49152 1.22877 0.91174 0.97900 0.89591 1.23057 0.97047 0.88066 1.03137 1.20729 0.93118 0.96979 1.08059 1.23275 0.91354 0.96125 0.88978 1.68673 1.41396 0.99146 1.24608 0.90028 0.83560 0.85548 0.83224 0.83612 0.93640 0.89504 0.91819 0.86395 0.92013 0.85656 0.87735 0.92670 0.86941 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.38 11.40 21.85 0.25 -38.13 16 2 C 0.02 0.98 5.50 85.33 0.47 1.45 16 3 Si 1.00 36.77 29.56 68.60 2.03 38.80 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.42 -23.09 9.35 23.43 0.22 -22.87 16 8 H 0.09 5.03 7.85 -2.91 -0.02 5.01 16 9 C 0.35 20.32 7.35 134.91 0.99 21.31 16 10 N -0.54 -30.54 7.83 -193.18 -1.51 -32.05 16 11 C 0.16 8.02 10.70 85.26 0.91 8.93 16 12 C -0.32 -14.10 5.94 -19.64 -0.12 -14.21 16 13 C 0.03 1.07 5.88 -20.04 -0.12 0.95 16 14 C -0.17 -5.24 9.45 22.56 0.21 -5.03 16 15 C -0.08 -1.97 10.02 22.21 0.22 -1.75 16 16 C -0.20 -4.76 8.82 22.48 0.20 -4.56 16 17 C 0.11 3.17 5.63 38.18 0.22 3.38 16 18 N -0.50 -12.04 4.77 -694.47 -3.31 -15.35 16 19 C 0.02 0.46 5.41 86.31 0.47 0.93 16 20 C 0.07 1.24 7.01 72.01 0.50 1.75 16 21 O -0.40 -8.11 10.83 -148.98 -1.61 -9.72 16 22 C 0.06 0.96 7.01 72.02 0.50 1.47 16 23 C 0.01 0.25 4.33 86.32 0.37 0.62 16 24 C -0.17 -5.68 8.60 22.67 0.19 -5.49 16 25 C 0.18 8.10 10.70 85.26 0.91 9.01 16 26 N -0.62 -33.44 10.34 -193.18 -2.00 -35.43 16 27 H 0.29 13.37 8.29 -92.70 -0.77 12.60 16 28 H 0.15 6.40 6.33 -2.91 -0.02 6.38 16 29 H 0.13 3.57 6.28 -2.91 -0.02 3.56 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.15 2.68 5.79 -2.91 -0.02 2.66 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 2.10 6.85 -2.39 -0.02 2.08 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.61 7.22 -2.39 -0.02 1.59 16 39 H 0.06 0.99 7.53 -2.39 -0.02 0.97 16 40 H 0.11 3.88 5.42 -2.91 -0.02 3.86 16 41 H 0.17 6.23 6.33 -2.91 -0.02 6.21 16 Total: -1.00 -68.21 334.40 1.08 -67.13 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 1.07 Total: 28.87 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.16 Total: -4.11 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -6.57 Total: -120.96 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.61 Total: -9.72 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -68.21 1.08 -67.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241959627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.088 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds