Wall clock time and date at job start Fri Apr 10 2020 22:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47299 * 299.99989 * 3 2 1 6 6 H 1.48497 * 109.47289 * 59.99997 * 3 2 1 7 7 C 1.38656 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00047 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.35711 * 116.99552 * 185.38569 * 9 7 2 11 11 C 1.39423 * 120.39565 * 5.63968 * 10 9 7 12 12 C 1.38220 * 118.45730 * 180.02562 * 11 10 9 13 13 C 1.39423 * 119.14747 * 0.02562 * 12 11 10 14 14 C 1.48296 * 119.65121 * 180.02562 * 13 12 11 15 15 C 1.39435 * 120.50164 * 0.26799 * 14 13 12 16 16 N 1.31708 * 120.75134 * 180.28954 * 15 14 13 17 17 C 1.31857 * 121.93557 * 359.71358 * 16 15 14 18 18 C 1.38973 * 120.93330 * 0.02562 * 17 16 15 19 19 N 1.39728 * 120.42890 * 180.02562 * 18 17 16 20 20 C 1.48536 * 111.00280 * 117.43491 * 19 18 17 21 21 C 1.54939 * 103.22678 * 159.71671 * 20 19 18 22 22 C 1.54594 * 102.92556 * 322.58960 * 21 20 19 23 23 C 1.47901 * 111.00100 * 234.83156 * 19 18 17 24 24 C 1.39094 * 119.14064 * 359.97438 * 18 17 16 25 25 N 1.32676 * 120.69836 * 0.27182 * 13 12 11 26 26 C 1.31668 * 121.68624 * 359.43502 * 25 13 12 27 27 H 0.96997 * 119.99964 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.76822 * 359.97438 * 11 10 9 29 29 H 1.08001 * 120.42195 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.62346 * 0.03107 * 15 14 13 31 31 H 1.07999 * 119.53529 * 179.97438 * 17 16 15 32 32 H 1.08994 * 110.66903 * 278.15700 * 20 19 18 33 33 H 1.09005 * 110.66171 * 41.28898 * 20 19 18 34 34 H 1.09003 * 110.72460 * 204.22409 * 21 20 19 35 35 H 1.09002 * 110.72029 * 80.94692 * 21 20 19 36 36 H 1.09001 * 110.30541 * 263.03948 * 22 21 20 37 37 H 1.09000 * 110.30863 * 140.86860 * 22 21 20 38 38 H 1.08997 * 109.91621 * 333.50884 * 23 19 18 39 39 H 1.08995 * 109.91833 * 94.79938 * 23 19 18 40 40 H 1.08002 * 120.87779 * 180.02562 * 24 18 17 41 41 H 1.07995 * 119.60788 * 180.29013 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0694 -3.5038 0.1124 11 6 3.4433 -3.4354 0.3396 12 6 4.1526 -4.6168 0.4475 13 6 3.4751 -5.8292 0.3258 14 6 4.2250 -7.1035 0.4403 15 6 5.5996 -7.0971 0.6738 16 7 6.2714 -8.2258 0.7707 17 6 5.6823 -9.4001 0.6584 18 6 4.3146 -9.4942 0.4304 19 7 3.7010 -10.7441 0.3136 20 6 2.7014 -10.9494 1.3930 21 6 1.7923 -12.0687 0.8261 22 6 1.7106 -11.7194 -0.6776 23 6 2.9503 -10.8495 -0.9564 24 6 3.5643 -8.3281 0.3210 25 7 2.1672 -5.8550 0.1039 26 6 1.4612 -4.7484 0.0015 27 1 -0.4850 0.8400 -0.0004 28 1 3.9418 -2.4815 0.4283 29 1 5.2182 -4.6009 0.6229 30 1 6.1200 -6.1560 0.7723 31 1 6.2709 -10.3015 0.7440 32 1 3.1886 -11.2774 2.3112 33 1 2.1282 -10.0383 1.5647 34 1 0.8042 -12.0324 1.2849 35 1 2.2501 -13.0473 0.9704 36 1 0.7998 -11.1581 -0.8866 37 1 1.7427 -12.6277 -1.2793 38 1 2.6415 -9.8584 -1.2884 39 1 3.5719 -11.3218 -1.7170 40 1 2.4996 -8.3685 0.1444 41 1 0.3974 -4.8085 -0.1747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242621702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:53 Heat of formation + Delta-G solvation = 51.755184 kcal Electronic energy + Delta-G solvation = -24227.804039 eV Core-core repulsion = 20687.355779 eV Total energy + Delta-G solvation = -3540.448260 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.70182 -39.64727 -38.45477 -37.28879 -33.21435 -32.95762 -32.33729 -31.50868 -29.11214 -28.99018 -28.40152 -25.82734 -24.16445 -23.52229 -22.57851 -21.52551 -21.13541 -20.53094 -18.33251 -17.77440 -17.01851 -16.70062 -16.50669 -15.77424 -15.25534 -15.10015 -14.65315 -14.42320 -14.20573 -13.86077 -13.74994 -13.35809 -13.19872 -13.02511 -12.77083 -12.57403 -12.40852 -12.36977 -11.98792 -11.92696 -11.59149 -11.49530 -11.39901 -11.23657 -10.81985 -10.63676 -9.98911 -9.75772 -9.57035 -9.23051 -9.12042 -8.96125 -8.82315 -8.68525 -7.36117 -6.75199 -4.30603 0.86586 1.25028 1.90871 2.25736 2.97776 2.98426 3.04629 3.68802 3.73046 3.82490 4.39264 4.49194 4.50075 4.59016 4.67678 4.77220 4.86084 4.96787 5.03852 5.09208 5.09782 5.10408 5.28155 5.41995 5.50474 5.57939 5.60533 5.65318 5.70384 5.75191 5.76694 5.85019 5.93302 5.96873 6.25003 6.32052 6.40433 6.52477 6.54104 6.68883 6.84620 7.03481 7.18090 7.29741 7.67187 8.07197 8.56947 8.68978 9.31678 10.40712 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002731 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.825127 B =10249.471938 C =11182.771169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.109 3.891 11 C -0.202 4.202 12 C -0.095 4.095 13 C 0.033 3.967 14 C -0.038 4.038 15 C 0.090 3.910 16 N -0.474 5.474 17 C 0.103 3.897 18 C 0.028 3.972 19 N -0.476 5.476 20 C 0.036 3.964 21 C -0.122 4.122 22 C -0.131 4.131 23 C 0.035 3.965 24 C -0.091 4.091 25 N -0.432 5.432 26 C 0.035 3.965 27 H 0.275 0.725 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -16.817 0.642 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.054 6.054 10 C 0.051 3.949 11 C -0.228 4.228 12 C -0.114 4.114 13 C -0.101 4.101 14 C -0.042 4.042 15 C -0.068 4.068 16 N -0.182 5.182 17 C -0.055 4.055 18 C -0.068 4.068 19 N -0.198 5.198 20 C -0.090 4.090 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.092 4.092 24 C -0.119 4.119 25 N -0.141 5.141 26 C -0.129 4.129 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.158 0.842 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.067 -17.726 0.705 18.749 hybrid contribution -0.690 2.389 -0.125 2.489 sum 5.377 -15.337 0.580 16.263 Atomic orbital electron populations 1.70033 1.06144 1.28390 1.43367 1.25412 0.95947 0.99213 0.95826 0.85564 0.79217 0.79653 0.78590 1.18819 1.19793 1.19799 1.21503 0.92095 0.80512 1.52771 0.88589 1.83972 1.34389 1.11564 1.75492 1.20555 0.91183 0.89251 0.93952 1.21473 0.94270 0.99023 1.07987 1.21679 0.99836 0.92034 0.97897 1.18847 0.90025 0.90846 1.10404 1.19434 0.93680 0.92263 0.98785 1.22846 0.90504 0.96694 0.96773 1.67680 1.39487 0.98159 1.12844 1.22578 0.90814 0.95555 0.96510 1.19973 0.95086 0.89032 1.02720 1.62453 1.28222 1.26117 1.03041 1.23377 0.92404 0.98339 0.94880 1.22484 0.99494 0.98903 0.95169 1.22413 0.97682 1.00035 0.96825 1.23025 0.94264 0.99948 0.91961 1.22158 1.01153 0.91562 0.97067 1.67268 1.06909 1.30497 1.09460 1.21723 0.99829 0.85016 1.06366 0.91457 0.84239 0.85867 0.82595 0.82620 0.89737 0.92822 0.90780 0.90630 0.91152 0.90848 0.92693 0.90047 0.84225 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.12 13.67 55.48 0.76 -22.36 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.95 18.99 29.55 -169.99 -5.02 13.97 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.13 9.46 30.89 0.29 -9.83 16 8 H 0.10 2.27 5.33 -52.48 -0.28 1.99 16 9 O -0.15 -4.07 9.76 0.21 0.00 -4.07 16 10 C 0.11 2.46 6.67 -38.87 -0.26 2.20 16 11 C -0.20 -4.07 9.22 -39.15 -0.36 -4.43 16 12 C -0.09 -1.67 9.46 -39.15 -0.37 -2.04 16 13 C 0.03 0.61 6.73 -82.92 -0.56 0.05 16 14 C -0.04 -0.61 5.89 -104.79 -0.62 -1.23 16 15 C 0.09 1.33 10.59 -17.16 -0.18 1.15 16 16 N -0.47 -6.93 10.34 -12.79 -0.13 -7.06 16 17 C 0.10 1.38 11.11 -17.27 -0.19 1.18 16 18 C 0.03 0.37 4.87 -83.67 -0.41 -0.03 16 19 N -0.48 -5.44 5.29 -167.07 -0.88 -6.33 16 20 C 0.04 0.37 6.44 -1.89 -0.01 0.35 16 21 C -0.12 -0.99 7.06 -24.87 -0.18 -1.16 16 22 C -0.13 -1.09 6.93 -25.38 -0.18 -1.27 16 23 C 0.03 0.36 6.51 -2.75 -0.02 0.34 16 24 C -0.09 -1.36 7.53 -38.74 -0.29 -1.65 16 25 N -0.43 -8.46 9.49 -9.61 -0.09 -8.55 16 26 C 0.04 0.73 11.14 -17.35 -0.19 0.54 16 27 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.14 2.71 5.83 -52.49 -0.31 2.41 16 29 H 0.12 1.74 6.20 -52.49 -0.33 1.42 16 30 H 0.16 1.98 6.19 -52.49 -0.32 1.65 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.61 7.03 -51.93 -0.37 0.24 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.64 6.39 -51.93 -0.33 0.31 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.14 2.14 6.73 -52.49 -0.35 1.79 16 41 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -28.69 341.49 -8.64 -37.33 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.80 Total: 6.76 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.62 Total: -14.83 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.35 Total: -44.30 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.00 Total: -4.07 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.69 -8.64 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242621702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.088 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds