Wall clock time and date at job start Fri Apr 10 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47299 * 299.99989 * 3 2 1 6 6 H 1.48497 * 109.47289 * 59.99997 * 3 2 1 7 7 C 1.38656 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00047 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.35711 * 116.99552 * 185.38569 * 9 7 2 11 11 C 1.39423 * 120.39565 * 5.63968 * 10 9 7 12 12 C 1.38220 * 118.45730 * 180.02562 * 11 10 9 13 13 C 1.39423 * 119.14747 * 0.02562 * 12 11 10 14 14 C 1.48296 * 119.65121 * 180.02562 * 13 12 11 15 15 C 1.39435 * 120.50164 * 0.26799 * 14 13 12 16 16 N 1.31708 * 120.75134 * 180.28954 * 15 14 13 17 17 C 1.31857 * 121.93557 * 359.71358 * 16 15 14 18 18 C 1.38973 * 120.93330 * 0.02562 * 17 16 15 19 19 N 1.39728 * 120.42890 * 180.02562 * 18 17 16 20 20 C 1.48536 * 111.00280 * 117.43491 * 19 18 17 21 21 C 1.54939 * 103.22678 * 159.71671 * 20 19 18 22 22 C 1.54594 * 102.92556 * 322.58960 * 21 20 19 23 23 C 1.47901 * 111.00100 * 234.83156 * 19 18 17 24 24 C 1.39094 * 119.14064 * 359.97438 * 18 17 16 25 25 N 1.32676 * 120.69836 * 0.27182 * 13 12 11 26 26 C 1.31668 * 121.68624 * 359.43502 * 25 13 12 27 27 H 0.96997 * 119.99964 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.76822 * 359.97438 * 11 10 9 29 29 H 1.08001 * 120.42195 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.62346 * 0.03107 * 15 14 13 31 31 H 1.07999 * 119.53529 * 179.97438 * 17 16 15 32 32 H 1.08994 * 110.66903 * 278.15700 * 20 19 18 33 33 H 1.09005 * 110.66171 * 41.28898 * 20 19 18 34 34 H 1.09003 * 110.72460 * 204.22409 * 21 20 19 35 35 H 1.09002 * 110.72029 * 80.94692 * 21 20 19 36 36 H 1.09001 * 110.30541 * 263.03948 * 22 21 20 37 37 H 1.09000 * 110.30863 * 140.86860 * 22 21 20 38 38 H 1.08997 * 109.91621 * 333.50884 * 23 19 18 39 39 H 1.08995 * 109.91833 * 94.79938 * 23 19 18 40 40 H 1.08002 * 120.87779 * 180.02562 * 24 18 17 41 41 H 1.07995 * 119.60788 * 180.29013 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0694 -3.5038 0.1124 11 6 3.4433 -3.4354 0.3396 12 6 4.1526 -4.6168 0.4475 13 6 3.4751 -5.8292 0.3258 14 6 4.2250 -7.1035 0.4403 15 6 5.5996 -7.0971 0.6738 16 7 6.2714 -8.2258 0.7707 17 6 5.6823 -9.4001 0.6584 18 6 4.3146 -9.4942 0.4304 19 7 3.7010 -10.7441 0.3136 20 6 2.7014 -10.9494 1.3930 21 6 1.7923 -12.0687 0.8261 22 6 1.7106 -11.7194 -0.6776 23 6 2.9503 -10.8495 -0.9564 24 6 3.5643 -8.3281 0.3210 25 7 2.1672 -5.8550 0.1039 26 6 1.4612 -4.7484 0.0015 27 1 -0.4850 0.8400 -0.0004 28 1 3.9418 -2.4815 0.4283 29 1 5.2182 -4.6009 0.6229 30 1 6.1200 -6.1560 0.7723 31 1 6.2709 -10.3015 0.7440 32 1 3.1886 -11.2774 2.3112 33 1 2.1282 -10.0383 1.5647 34 1 0.8042 -12.0324 1.2849 35 1 2.2501 -13.0473 0.9704 36 1 0.7998 -11.1581 -0.8866 37 1 1.7427 -12.6277 -1.2793 38 1 2.6415 -9.8584 -1.2884 39 1 3.5719 -11.3218 -1.7170 40 1 2.4996 -8.3685 0.1444 41 1 0.3974 -4.8085 -0.1747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242621702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:52 Heat of formation + Delta-G solvation = 34.257202 kcal Electronic energy + Delta-G solvation = -24228.562809 eV Core-core repulsion = 20687.355779 eV Total energy + Delta-G solvation = -3541.207030 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88789 -41.15194 -39.53216 -38.87192 -34.60485 -34.16189 -33.84480 -33.05986 -30.30390 -29.86938 -29.63583 -27.58528 -25.45684 -24.87563 -23.95518 -22.84592 -21.89497 -21.58924 -20.06708 -19.23419 -18.39879 -17.92872 -17.60737 -16.90802 -16.66238 -16.32518 -16.19707 -15.97754 -15.34269 -15.30944 -14.92094 -14.83344 -14.27326 -14.16604 -14.10172 -14.02567 -13.63724 -13.50247 -13.35294 -13.14732 -12.86599 -12.79892 -12.29330 -12.13781 -12.12157 -11.76986 -11.50105 -11.16138 -10.85831 -10.72091 -10.59477 -10.52306 -10.09972 -9.66744 -8.95039 -8.57444 -6.24315 -0.42525 0.09385 0.30369 0.78686 1.35829 1.43731 1.53827 2.10918 2.56233 2.77288 2.88233 3.04241 3.14868 3.35399 3.53976 3.63415 3.74399 3.85872 3.89290 3.90167 3.99482 4.05421 4.20156 4.28801 4.34558 4.37827 4.55964 4.57719 4.68720 4.84932 4.86746 4.91922 4.92090 5.02123 5.06399 5.15863 5.19201 5.21564 5.26080 5.37112 5.41782 5.69124 5.70005 5.87102 6.15669 6.85282 6.92814 6.97052 7.56773 8.63937 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002731 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.825127 B =10249.471938 C =11182.771169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 1.020 2.980 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.417 4.417 8 H 0.109 0.891 9 O -0.206 6.206 10 C 0.082 3.918 11 C -0.196 4.196 12 C -0.092 4.092 13 C 0.054 3.946 14 C -0.067 4.067 15 C 0.100 3.900 16 N -0.483 5.483 17 C 0.114 3.886 18 C 0.031 3.969 19 N -0.476 5.476 20 C 0.032 3.968 21 C -0.116 4.116 22 C -0.129 4.129 23 C 0.031 3.969 24 C -0.089 4.089 25 N -0.442 5.442 26 C 0.027 3.973 27 H 0.277 0.723 28 H 0.147 0.853 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.181 0.819 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -19.183 1.000 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.215 4.215 3 Si 0.839 3.161 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.492 4.492 8 H 0.127 0.873 9 O -0.110 6.110 10 C 0.027 3.973 11 C -0.222 4.222 12 C -0.111 4.111 13 C -0.082 4.082 14 C -0.070 4.070 15 C -0.058 4.058 16 N -0.191 5.191 17 C -0.044 4.044 18 C -0.066 4.066 19 N -0.198 5.198 20 C -0.094 4.094 21 C -0.154 4.154 22 C -0.167 4.167 23 C -0.095 4.095 24 C -0.118 4.118 25 N -0.151 5.151 26 C -0.135 4.135 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.198 0.802 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.148 0.852 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.016 -20.150 1.061 22.101 hybrid contribution -1.386 2.541 -0.207 2.901 sum 7.630 -17.610 0.855 19.211 Atomic orbital electron populations 1.70166 1.08123 1.29303 1.46936 1.26633 0.96822 1.02832 0.95205 0.84506 0.78494 0.74550 0.78582 1.17028 1.19419 1.19361 1.21958 0.92845 0.80922 1.53520 0.87338 1.83960 1.35621 1.12434 1.78955 1.20947 0.92453 0.89023 0.94839 1.21710 0.93402 1.00434 1.06665 1.22072 1.01863 0.90525 0.96650 1.19453 0.89668 0.92455 1.06627 1.19423 0.94448 0.91391 1.01769 1.23143 0.89715 0.97764 0.95162 1.67791 1.39478 0.98452 1.13392 1.23040 0.90921 0.96104 0.94296 1.20079 0.95217 0.89258 1.01996 1.62558 1.28796 1.24570 1.03827 1.23460 0.92458 0.98506 0.95008 1.22490 0.99682 0.98543 0.94652 1.22423 0.96523 1.00320 0.97405 1.23093 0.95260 0.99499 0.91676 1.22202 1.00920 0.92114 0.96528 1.67362 1.07829 1.29791 1.10119 1.21850 1.00354 0.84957 1.06359 0.91400 0.83573 0.81506 0.80416 0.80186 0.88985 0.94446 0.89711 0.89403 0.91324 0.89110 0.94544 0.89258 0.85217 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 13.67 21.61 0.30 -52.26 16 2 C -0.02 -0.81 5.49 84.83 0.47 -0.34 16 3 Si 1.02 39.73 29.55 68.60 2.03 41.75 16 4 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.42 -22.37 9.46 67.92 0.64 -21.73 16 8 H 0.11 5.23 5.33 -2.91 -0.02 5.21 16 9 O -0.21 -11.52 9.76 -22.17 -0.22 -11.73 16 10 C 0.08 3.84 6.67 22.73 0.15 3.99 16 11 C -0.20 -7.80 9.22 22.55 0.21 -7.60 16 12 C -0.09 -3.03 9.46 22.55 0.21 -2.81 16 13 C 0.05 1.90 6.73 41.98 0.28 2.19 16 14 C -0.07 -2.00 5.89 -19.97 -0.12 -2.12 16 15 C 0.10 2.60 10.59 85.00 0.90 3.50 16 16 N -0.48 -12.42 10.34 -194.37 -2.01 -14.43 16 17 C 0.11 2.65 11.11 84.87 0.94 3.59 16 18 C 0.03 0.75 4.87 38.26 0.19 0.93 16 19 N -0.48 -9.73 5.29 -682.48 -3.61 -13.34 16 20 C 0.03 0.58 6.44 86.65 0.56 1.13 16 21 C -0.12 -1.56 7.06 31.80 0.22 -1.33 16 22 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 23 C 0.03 0.59 6.51 86.45 0.56 1.15 16 24 C -0.09 -2.53 7.53 22.82 0.17 -2.36 16 25 N -0.44 -17.30 9.49 -184.32 -1.75 -19.05 16 26 C 0.03 1.14 11.14 84.89 0.95 2.09 16 27 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.15 5.59 5.83 -2.91 -0.02 5.57 16 29 H 0.17 4.00 6.20 -2.91 -0.02 3.98 16 30 H 0.18 3.70 6.19 -2.91 -0.02 3.69 16 31 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 0.81 7.03 -2.38 -0.02 0.79 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 0.82 6.39 -2.39 -0.02 0.80 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.13 3.93 6.73 -2.91 -0.02 3.91 16 41 H 0.16 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -65.33 341.49 2.36 -62.97 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.07 Total: 27.42 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 6.56 Total: -21.35 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -7.07 Total: -99.07 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.22 Total: -11.73 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -65.33 2.36 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242621702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.230 kcal (2) G-P(sol) polarization free energy of solvation -65.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds