Wall clock time and date at job start Fri Apr 10 2020 22:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48498 * 109.47300 * 269.99670 * 3 2 1 5 5 H 1.48500 * 109.47158 * 30.00201 * 3 2 1 6 6 H 1.48505 * 109.47041 * 150.00154 * 3 2 1 7 7 C 1.40050 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00104 * 168.14912 * 7 2 1 9 9 C 1.40821 * 119.99700 * 348.14589 * 7 2 1 10 10 C 1.41122 * 120.72544 * 332.41476 * 9 7 2 11 11 C 1.36871 * 118.40295 * 180.25952 * 10 9 7 12 12 C 1.38889 * 119.82366 * 359.47427 * 11 10 9 13 13 N 1.31718 * 121.52026 * 0.26797 * 12 11 10 14 14 C 1.32685 * 121.70449 * 0.02562 * 13 12 11 15 15 C 1.47555 * 119.99773 * 180.02562 * 14 13 12 16 16 C 1.39956 * 120.60707 * 131.10255 * 15 14 13 17 17 C 1.38388 * 118.36035 * 180.02562 * 16 15 14 18 18 C 1.38357 * 119.50997 * 359.97438 * 17 16 15 19 19 N 1.31926 * 121.21801 * 0.02562 * 18 17 16 20 20 C 1.32349 * 121.77754 * 359.69947 * 19 18 17 21 21 N 1.38471 * 119.82259 * 180.31337 * 20 19 18 22 22 C 1.47013 * 110.99829 * 67.52831 * 21 20 19 23 23 C 1.53098 * 109.25659 * 177.60479 * 22 21 20 24 24 O 1.43018 * 109.25872 * 56.85064 * 23 22 21 25 25 C 1.43019 * 113.73642 * 301.32814 * 24 23 22 26 26 C 1.47011 * 111.00193 * 303.88877 * 21 20 19 27 27 H 0.96998 * 120.00114 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.79939 * 0.03431 * 10 9 7 29 29 H 1.08005 * 120.08325 * 179.74038 * 11 10 9 30 30 H 1.07999 * 119.23819 * 180.25009 * 12 11 10 31 31 H 1.07997 * 120.82108 * 359.97063 * 16 15 14 32 32 H 1.08002 * 120.24200 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.38930 * 180.02562 * 18 17 16 34 34 H 1.08992 * 109.51034 * 297.53918 * 22 21 20 35 35 H 1.09003 * 109.51056 * 57.67439 * 22 21 20 36 36 H 1.08998 * 109.50671 * 296.91436 * 23 22 21 37 37 H 1.09001 * 109.54303 * 176.80490 * 23 22 21 38 38 H 1.09002 * 109.50740 * 298.73630 * 25 24 23 39 39 H 1.08997 * 109.54394 * 178.62888 * 25 24 23 40 40 H 1.08992 * 109.51139 * 302.33366 * 26 21 20 41 41 H 1.09002 * 109.50168 * 62.46136 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4895 2.0465 -1.4000 5 1 1.4393 2.6527 0.7001 6 1 3.5395 1.4402 0.7000 7 6 2.0082 -1.2128 -0.0005 8 1 3.0710 -1.2227 -0.1926 9 6 1.3266 -2.4195 0.2494 10 6 0.1563 -2.4365 1.0379 11 6 -0.4650 -3.6366 1.2550 12 6 0.0554 -4.7954 0.6934 13 7 1.1451 -4.7730 -0.0462 14 6 1.7988 -3.6446 -0.2906 15 6 3.0157 -3.6628 -1.1250 16 6 3.1704 -2.7556 -2.1794 17 6 4.3301 -2.8144 -2.9323 18 6 5.2948 -3.7575 -2.6255 19 7 5.1302 -4.6042 -1.6273 20 6 4.0435 -4.5885 -0.8720 21 7 3.9157 -5.4919 0.1696 22 6 4.8932 -5.2129 1.2318 23 6 4.6779 -6.1947 2.3866 24 8 4.7815 -7.5331 1.8934 25 6 3.8436 -7.8394 0.8580 26 6 4.0503 -6.8742 -0.3123 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2375 -1.5250 1.4629 29 1 -1.3601 -3.6816 1.8578 30 1 -0.4448 -5.7366 0.8675 31 1 2.4034 -2.0282 -2.4006 32 1 4.4813 -2.1285 -3.7528 33 1 6.1992 -3.8013 -3.2141 34 1 5.9025 -5.3304 0.8376 35 1 4.7586 -4.1928 1.5915 36 1 3.6878 -6.0405 2.8156 37 1 5.4361 -6.0292 3.1520 38 1 2.8292 -7.7330 1.2427 39 1 3.9980 -8.8631 0.5172 40 1 3.3007 -7.0668 -1.0797 41 1 5.0463 -7.0182 -0.7312 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243455088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:56 Heat of formation + Delta-G solvation = 33.067491 kcal Electronic energy + Delta-G solvation = -26217.310466 eV Core-core repulsion = 22676.051846 eV Total energy + Delta-G solvation = -3541.258619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23378 -38.69118 -38.02179 -35.25456 -34.18976 -32.52831 -30.91193 -30.76600 -30.43392 -28.84767 -26.44056 -25.74364 -23.72308 -23.25782 -22.37171 -21.35922 -20.43571 -20.01475 -17.49108 -17.17606 -16.13751 -15.96526 -15.88335 -15.40277 -15.02488 -14.83346 -14.74081 -14.32410 -14.10738 -13.79505 -13.46510 -13.07970 -12.84304 -12.45114 -12.27515 -12.10090 -12.05905 -11.56270 -11.49077 -11.36139 -11.19705 -11.09523 -11.07900 -10.68318 -10.39179 -9.96817 -9.60228 -9.51521 -9.18164 -9.11262 -8.54576 -8.18172 -8.06531 -7.90967 -7.42494 -6.92945 -4.59439 1.53768 1.84968 2.59548 2.92813 2.94007 2.98814 3.15361 3.74889 3.95778 4.12277 4.30480 4.52125 4.94982 5.19234 5.32756 5.39527 5.41211 5.49866 5.52772 5.54083 5.64798 5.74062 5.81112 5.85567 5.88172 6.12026 6.13198 6.21535 6.23489 6.28549 6.42810 6.61593 6.70146 6.84551 6.87745 7.01417 7.10230 7.19174 7.21919 7.36701 7.65993 7.77188 7.85826 7.87349 8.31348 8.47364 8.54583 8.63275 9.61654 9.93739 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.005736 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.224723 B = 4880.498236 C = 5840.900524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.130 4.130 11 C -0.149 4.149 12 C -0.030 4.030 13 N -0.424 5.424 14 C 0.028 3.972 15 C 0.013 3.987 16 C -0.055 4.055 17 C -0.180 4.180 18 C 0.082 3.918 19 N -0.518 5.518 20 C 0.283 3.717 21 N -0.455 5.455 22 C 0.026 3.974 23 C 0.068 3.932 24 O -0.390 6.390 25 C 0.067 3.933 26 C 0.034 3.966 27 H 0.284 0.716 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -4.214 -0.583 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.100 0.900 9 C 0.081 3.919 10 C -0.155 4.155 11 C -0.170 4.170 12 C -0.191 4.191 13 N -0.131 5.131 14 C -0.110 4.110 15 C 0.009 3.991 16 C -0.082 4.082 17 C -0.200 4.200 18 C -0.077 4.077 19 N -0.230 5.230 20 C 0.054 3.946 21 N -0.178 5.178 22 C -0.101 4.101 23 C -0.009 4.009 24 O -0.309 6.309 25 C -0.010 4.010 26 C -0.093 4.093 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.849 -5.529 -0.464 8.062 hybrid contribution -0.217 2.506 -0.301 2.533 sum 5.632 -3.023 -0.765 6.438 Atomic orbital electron populations 1.69748 1.07598 1.29718 1.34280 1.25966 0.94809 1.01452 0.92174 0.86283 0.80641 0.80277 0.79592 1.19122 1.19879 1.18313 1.19495 0.96348 0.90220 1.41197 0.89989 1.18325 0.91915 0.92393 0.89226 1.21395 0.97808 0.96852 0.99492 1.21456 0.99758 0.94682 1.01077 1.21667 0.96801 0.96457 1.04199 1.67074 1.05560 1.28983 1.11481 1.19072 0.97702 0.89604 1.04650 1.19119 0.93010 0.93238 0.93777 1.21836 0.97142 0.97008 0.92168 1.21956 0.95596 1.00823 1.01668 1.22266 0.98611 0.92184 0.94664 1.67536 1.23875 1.24936 1.06678 1.19737 0.89024 0.93932 0.91910 1.59936 1.48591 1.01496 1.07728 1.22739 0.94068 1.00504 0.92808 1.22616 1.02077 0.81311 0.94881 1.87912 1.58621 1.29811 1.54518 1.22645 0.93311 0.97777 0.87300 1.22627 1.01211 0.87674 0.97831 0.90442 0.85540 0.88544 0.86413 0.83921 0.85475 0.83956 0.93379 0.89989 0.92104 0.88781 0.91911 0.88893 0.89874 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.61 10.86 55.55 0.60 -18.01 16 2 C 0.07 1.71 5.26 -17.31 -0.09 1.62 16 3 Si 0.91 17.31 29.58 -169.99 -5.03 12.28 16 4 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.64 7.07 -37.93 -0.27 -10.91 16 8 H 0.08 1.95 6.66 -52.49 -0.35 1.60 16 9 C 0.09 2.13 5.57 -106.40 -0.59 1.54 16 10 C -0.13 -3.14 8.72 -38.98 -0.34 -3.48 16 11 C -0.15 -3.30 10.03 -39.84 -0.40 -3.70 16 12 C -0.03 -0.65 11.16 -17.36 -0.19 -0.85 16 13 N -0.42 -9.91 9.61 -9.20 -0.09 -10.00 16 14 C 0.03 0.67 6.08 -82.27 -0.50 0.17 16 15 C 0.01 0.28 5.12 -104.56 -0.54 -0.26 16 16 C -0.05 -1.07 8.12 -38.88 -0.32 -1.39 16 17 C -0.18 -2.94 10.09 -39.48 -0.40 -3.33 16 18 C 0.08 1.34 11.17 -17.47 -0.20 1.14 16 19 N -0.52 -9.73 9.58 -12.13 -0.12 -9.85 16 20 C 0.28 5.71 5.34 -155.02 -0.83 4.89 16 21 N -0.45 -8.62 3.57 -172.60 -0.62 -9.24 16 22 C 0.03 0.45 5.53 -3.71 -0.02 0.43 16 23 C 0.07 1.03 7.01 37.21 0.26 1.29 16 24 O -0.39 -6.17 10.83 -35.23 -0.38 -6.55 16 25 C 0.07 0.99 7.01 37.21 0.26 1.25 16 26 C 0.03 0.57 5.43 -3.71 -0.02 0.55 16 27 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 28 H 0.13 3.13 6.27 -52.48 -0.33 2.80 16 29 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.14 2.88 7.28 -52.49 -0.38 2.49 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.05 0.83 8.04 -51.93 -0.42 0.42 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 41 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -27.21 339.49 -9.93 -37.14 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.25 Total: 10.15 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -4.18 Total: -11.04 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.22 Total: -47.10 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.38 Total: -6.55 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.21 -9.93 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243455088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.211 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds