Wall clock time and date at job start Fri Apr 10 2020 22:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48498 * 109.47300 * 269.99670 * 3 2 1 5 5 H 1.48500 * 109.47158 * 30.00201 * 3 2 1 6 6 H 1.48505 * 109.47041 * 150.00154 * 3 2 1 7 7 C 1.40050 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00104 * 168.14912 * 7 2 1 9 9 C 1.40821 * 119.99700 * 348.14589 * 7 2 1 10 10 C 1.41122 * 120.72544 * 332.41476 * 9 7 2 11 11 C 1.36871 * 118.40295 * 180.25952 * 10 9 7 12 12 C 1.38889 * 119.82366 * 359.47427 * 11 10 9 13 13 N 1.31718 * 121.52026 * 0.26797 * 12 11 10 14 14 C 1.32685 * 121.70449 * 0.02562 * 13 12 11 15 15 C 1.47555 * 119.99773 * 180.02562 * 14 13 12 16 16 C 1.39956 * 120.60707 * 131.10255 * 15 14 13 17 17 C 1.38388 * 118.36035 * 180.02562 * 16 15 14 18 18 C 1.38357 * 119.50997 * 359.97438 * 17 16 15 19 19 N 1.31926 * 121.21801 * 0.02562 * 18 17 16 20 20 C 1.32349 * 121.77754 * 359.69947 * 19 18 17 21 21 N 1.38471 * 119.82259 * 180.31337 * 20 19 18 22 22 C 1.47013 * 110.99829 * 67.52831 * 21 20 19 23 23 C 1.53098 * 109.25659 * 177.60479 * 22 21 20 24 24 O 1.43018 * 109.25872 * 56.85064 * 23 22 21 25 25 C 1.43019 * 113.73642 * 301.32814 * 24 23 22 26 26 C 1.47011 * 111.00193 * 303.88877 * 21 20 19 27 27 H 0.96998 * 120.00114 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.79939 * 0.03431 * 10 9 7 29 29 H 1.08005 * 120.08325 * 179.74038 * 11 10 9 30 30 H 1.07999 * 119.23819 * 180.25009 * 12 11 10 31 31 H 1.07997 * 120.82108 * 359.97063 * 16 15 14 32 32 H 1.08002 * 120.24200 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.38930 * 180.02562 * 18 17 16 34 34 H 1.08992 * 109.51034 * 297.53918 * 22 21 20 35 35 H 1.09003 * 109.51056 * 57.67439 * 22 21 20 36 36 H 1.08998 * 109.50671 * 296.91436 * 23 22 21 37 37 H 1.09001 * 109.54303 * 176.80490 * 23 22 21 38 38 H 1.09002 * 109.50740 * 298.73630 * 25 24 23 39 39 H 1.08997 * 109.54394 * 178.62888 * 25 24 23 40 40 H 1.08992 * 109.51139 * 302.33366 * 26 21 20 41 41 H 1.09002 * 109.50168 * 62.46136 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4895 2.0465 -1.4000 5 1 1.4393 2.6527 0.7001 6 1 3.5395 1.4402 0.7000 7 6 2.0082 -1.2128 -0.0005 8 1 3.0710 -1.2227 -0.1926 9 6 1.3266 -2.4195 0.2494 10 6 0.1563 -2.4365 1.0379 11 6 -0.4650 -3.6366 1.2550 12 6 0.0554 -4.7954 0.6934 13 7 1.1451 -4.7730 -0.0462 14 6 1.7988 -3.6446 -0.2906 15 6 3.0157 -3.6628 -1.1250 16 6 3.1704 -2.7556 -2.1794 17 6 4.3301 -2.8144 -2.9323 18 6 5.2948 -3.7575 -2.6255 19 7 5.1302 -4.6042 -1.6273 20 6 4.0435 -4.5885 -0.8720 21 7 3.9157 -5.4919 0.1696 22 6 4.8932 -5.2129 1.2318 23 6 4.6779 -6.1947 2.3866 24 8 4.7815 -7.5331 1.8934 25 6 3.8436 -7.8394 0.8580 26 6 4.0503 -6.8742 -0.3123 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2375 -1.5250 1.4629 29 1 -1.3601 -3.6816 1.8578 30 1 -0.4448 -5.7366 0.8675 31 1 2.4034 -2.0282 -2.4006 32 1 4.4813 -2.1285 -3.7528 33 1 6.1992 -3.8013 -3.2141 34 1 5.9025 -5.3304 0.8376 35 1 4.7586 -4.1928 1.5915 36 1 3.6878 -6.0405 2.8156 37 1 5.4361 -6.0292 3.1520 38 1 2.8292 -7.7330 1.2427 39 1 3.9980 -8.8631 0.5172 40 1 3.3007 -7.0668 -1.0797 41 1 5.0463 -7.0182 -0.7312 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243455088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:55 Heat of formation + Delta-G solvation = 17.947665 kcal Electronic energy + Delta-G solvation = -26217.966111 eV Core-core repulsion = 22676.051846 eV Total energy + Delta-G solvation = -3541.914264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66340 -40.15189 -39.60442 -36.60213 -35.93278 -34.09514 -32.45561 -32.17568 -31.99132 -30.44024 -27.84183 -27.44628 -25.02275 -24.79031 -23.88867 -23.03892 -22.06475 -21.36225 -19.24546 -18.57344 -17.69122 -17.54618 -17.15568 -16.96546 -16.38079 -16.25171 -15.98613 -15.95990 -15.67649 -15.22192 -14.86706 -14.55851 -14.35744 -14.00902 -13.95835 -13.68264 -13.34206 -13.22143 -13.14884 -12.94703 -12.73580 -12.51303 -12.34856 -12.23041 -11.72516 -11.59971 -11.22691 -10.92621 -10.70431 -10.52119 -10.10439 -9.84770 -9.80980 -9.40734 -9.11279 -8.64667 -6.40207 0.06451 0.37239 0.91506 1.22775 1.37296 1.47784 1.52397 2.15761 2.61597 2.75790 2.88260 2.90950 3.60637 3.74196 3.90423 3.93045 4.07550 4.15699 4.18138 4.22062 4.27778 4.36909 4.45712 4.54262 4.56478 4.63458 4.66428 4.78493 4.79660 4.89677 4.94190 4.99717 5.07507 5.20615 5.27770 5.36730 5.47539 5.68143 5.87710 5.89822 5.99742 6.06707 6.12223 6.41437 6.53196 6.76444 6.83467 7.05616 7.83550 8.24459 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.005736 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.224723 B = 4880.498236 C = 5840.900524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.041 3.959 3 Si 0.974 3.026 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.058 3.942 10 C -0.154 4.154 11 C -0.150 4.150 12 C -0.037 4.037 13 N -0.436 5.436 14 C 0.024 3.976 15 C -0.024 4.024 16 C -0.066 4.066 17 C -0.168 4.168 18 C 0.090 3.910 19 N -0.529 5.529 20 C 0.276 3.724 21 N -0.472 5.472 22 C 0.031 3.969 23 C 0.074 3.926 24 O -0.393 6.393 25 C 0.071 3.929 26 C 0.040 3.960 27 H 0.291 0.709 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.167 0.833 33 H 0.187 0.813 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -4.389 -1.281 8.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.094 0.906 9 C 0.054 3.946 10 C -0.180 4.180 11 C -0.170 4.170 12 C -0.198 4.198 13 N -0.143 5.143 14 C -0.115 4.115 15 C -0.029 4.029 16 C -0.093 4.093 17 C -0.187 4.187 18 C -0.069 4.069 19 N -0.241 5.241 20 C 0.048 3.952 21 N -0.195 5.195 22 C -0.097 4.097 23 C -0.003 4.003 24 O -0.312 6.312 25 C -0.006 4.006 26 C -0.088 4.088 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.146 0.854 32 H 0.185 0.815 33 H 0.203 0.797 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.410 -5.727 -1.157 9.436 hybrid contribution -0.680 2.493 -0.167 2.589 sum 6.729 -3.235 -1.324 7.583 Atomic orbital electron populations 1.69794 1.08832 1.30879 1.34791 1.26682 0.95433 1.04110 0.91300 0.85306 0.79033 0.76308 0.79908 1.18098 1.19094 1.18708 1.19531 0.96059 0.90891 1.42450 0.90635 1.18660 0.92640 0.93396 0.89929 1.21422 0.98673 0.97295 1.00601 1.21711 1.00369 0.93959 1.00917 1.22175 0.96507 0.97570 1.03512 1.67150 1.06099 1.29032 1.12053 1.19425 0.98336 0.89323 1.04370 1.19238 0.93198 0.95320 0.95109 1.21852 0.98305 0.96507 0.92625 1.22319 0.93828 1.00979 1.01613 1.23035 0.99656 0.90627 0.93556 1.67644 1.23217 1.25843 1.07404 1.19790 0.89111 0.93824 0.92458 1.59917 1.49390 1.02218 1.07993 1.22712 0.93573 1.00278 0.93089 1.22654 1.02527 0.80619 0.94496 1.87913 1.58813 1.29853 1.54622 1.22721 0.92758 0.98773 0.86300 1.22609 1.00574 0.87132 0.98437 0.89767 0.86737 0.85838 0.83686 0.85423 0.81538 0.79663 0.93555 0.91635 0.93141 0.85904 0.92757 0.85800 0.90918 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.53 10.86 21.85 0.24 -39.29 16 2 C 0.04 1.91 5.26 85.29 0.45 2.35 16 3 Si 0.97 35.53 29.58 68.60 2.03 37.56 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.46 -22.85 7.07 23.34 0.17 -22.69 16 8 H 0.08 3.73 6.66 -2.91 -0.02 3.71 16 9 C 0.06 2.99 5.57 -21.02 -0.12 2.88 16 10 C -0.15 -7.73 8.72 22.66 0.20 -7.53 16 11 C -0.15 -6.69 10.03 22.10 0.22 -6.46 16 12 C -0.04 -1.63 11.16 84.87 0.95 -0.68 16 13 N -0.44 -20.78 9.61 -183.02 -1.76 -22.54 16 14 C 0.02 1.20 6.08 42.40 0.26 1.46 16 15 C -0.02 -1.08 5.12 -19.82 -0.10 -1.18 16 16 C -0.07 -2.59 8.12 22.72 0.18 -2.41 16 17 C -0.17 -5.08 10.09 22.33 0.23 -4.86 16 18 C 0.09 2.69 11.17 84.71 0.95 3.64 16 19 N -0.53 -19.14 9.58 -192.29 -1.84 -20.98 16 20 C 0.28 11.19 5.34 133.62 0.71 11.90 16 21 N -0.47 -17.98 3.57 -699.98 -2.50 -20.48 16 22 C 0.03 1.06 5.53 86.31 0.48 1.53 16 23 C 0.07 2.17 7.01 72.02 0.50 2.67 16 24 O -0.39 -11.81 10.83 -148.98 -1.61 -13.42 16 25 C 0.07 2.01 7.01 72.01 0.50 2.52 16 26 C 0.04 1.32 5.43 86.31 0.47 1.79 16 27 H 0.29 12.74 8.30 -92.71 -0.77 11.97 16 28 H 0.11 5.92 6.27 -2.91 -0.02 5.90 16 29 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.15 5.47 8.06 -2.91 -0.02 5.45 16 31 H 0.13 5.31 7.28 -2.91 -0.02 5.29 16 32 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 34 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 41 H 0.05 1.52 7.84 -2.39 -0.02 1.50 16 Total: -1.00 -60.46 339.49 1.64 -58.82 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 1.04 Total: 35.40 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 6.04 Total: -15.07 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.86 Total: -103.29 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.61 Total: -13.42 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -60.46 1.64 -58.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243455088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.771 kcal (2) G-P(sol) polarization free energy of solvation -60.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds